HEADER STRUCTURAL PROTEIN 04-JUL-22 8AB4 TITLE CRYSTAL STRUCTURE OF MREB FROM GEOBACILLUS STEAROTHERMOPHILUS ATCC7953 TITLE 2 IN COMPLEX WITH GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL SHAPE-DETERMINING PROTEIN MREB; COMPND 3 CHAIN: M; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: MREB, B4109_2230, B4114_2117, GS458_2390; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL PROTEIN, BACTERIAL ACTIN, BACTERIAL CYTOSKELETON EXPDTA X-RAY DIFFRACTION AUTHOR I.LI DE LA SIERRA-GALLAY REVDAT 2 07-FEB-24 8AB4 1 REMARK REVDAT 1 12-JUL-23 8AB4 0 JRNL AUTH W.MAO,C.CONILLEAU,I.LI DE LA SIERRA-GALLAY,Y.AH-SENG, JRNL AUTH 2 H.VAN TILBEURGH,L.RENNER,S.NESSLER,A.BERTIN,A.CHASTANET, JRNL AUTH 3 R.CARBALLIDO-LOPES JRNL TITL POLYMERIZATION CYCLE OF AN ACTIN HOMOLOG MREB FROM A JRNL TITL 2 GRAM-POSITIVE BACTERIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8300 - 3.7900 1.00 2560 135 0.1796 0.2031 REMARK 3 2 3.7900 - 3.0100 1.00 2525 132 0.2168 0.2874 REMARK 3 3 3.0100 - 2.6300 1.00 2498 132 0.2359 0.2973 REMARK 3 4 2.6300 - 2.3900 1.00 2494 132 0.2637 0.3116 REMARK 3 5 2.3900 - 2.2200 0.98 2425 126 0.3119 0.3418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292122683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13182 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 47.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7ZPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 300, 2-(N REMARK 280 -MORPHOLINO)ETHANESULFONIC ACID, PH 5.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.70500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET M 1 REMARK 465 PHE M 2 REMARK 465 GLY M 3 REMARK 465 ILE M 4 REMARK 465 GLY M 5 REMARK 465 THR M 6 REMARK 465 ASP M 70 REMARK 465 GLY M 71 REMARK 465 VAL M 72 REMARK 465 ILE M 73 REMARK 465 LYS M 92 REMARK 465 THR M 93 REMARK 465 LYS M 94 REMARK 465 GLY M 95 REMARK 465 LEU M 96 REMARK 465 PHE M 97 REMARK 465 ALA M 98 REMARK 465 ASN M 334 REMARK 465 LYS M 335 REMARK 465 ALA M 336 REMARK 465 ARG M 337 REMARK 465 ASP M 338 REMARK 465 HIS M 339 REMARK 465 ARG M 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE M 27 91.63 -64.07 REMARK 500 LYS M 42 44.40 39.13 REMARK 500 ASN M 61 -12.62 71.78 REMARK 500 MET M 68 -100.47 55.19 REMARK 500 ARG M 181 31.97 -91.51 REMARK 500 ALA M 183 -146.94 -161.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8AAM RELATED DB: PDB REMARK 900 8AAM CONTAINS THE SAME PROTEIN COMPLEXED WITH ADP REMARK 900 RELATED ID: 7ZPT RELATED DB: PDB REMARK 900 7ZPT CONTAINS THE SAME PROTEIN REMARK 900 RELATED ID: 7ZPU RELATED DB: PDB REMARK 900 7ZPU CONTAINS THE SAME PROTEIN COMPLEXED WITH ATP DBREF1 8AB4 M 1 340 UNP A0A150MJ77_GEOSE DBREF2 8AB4 M A0A150MJ77 1 340 SEQRES 1 M 340 MET PHE GLY ILE GLY THR LYS ASP LEU GLY ILE ASP LEU SEQRES 2 M 340 GLY THR ALA ASN THR LEU VAL TYR VAL LYS GLY LYS GLY SEQRES 3 M 340 ILE VAL LEU ARG GLU PRO SER VAL VAL ALA ILE GLN ARG SEQRES 4 M 340 ASP THR LYS GLN ILE VAL ALA VAL GLY ASN GLU ALA LYS SEQRES 5 M 340 ASN MET ILE GLY ARG THR PRO GLY ASN ILE VAL ALA LEU SEQRES 6 M 340 ARG PRO MET LYS ASP GLY VAL ILE ALA ASP TYR GLU THR SEQRES 7 M 340 THR ALA THR MET MET LYS TYR TYR ILE ARG LYS ALA ILE SEQRES 8 M 340 LYS THR LYS GLY LEU PHE ALA GLY LYS PRO TYR VAL MET SEQRES 9 M 340 VAL CYS VAL PRO TYR GLY ILE THR ALA VAL GLU GLU ARG SEQRES 10 M 340 ALA VAL ILE ASP ALA THR ARG GLN ALA GLY ALA ARG ASP SEQRES 11 M 340 ALA TYR THR ILE GLU GLU PRO PHE ALA ALA ALA ILE GLY SEQRES 12 M 340 ALA ASN LEU PRO VAL TRP GLU PRO THR GLY SER MET VAL SEQRES 13 M 340 VAL ASP ILE GLY GLY GLY THR THR GLU VAL ALA VAL ILE SEQRES 14 M 340 SER LEU GLY GLY ILE VAL THR SER GLN SER ILE ARG ILE SEQRES 15 M 340 ALA GLY ASP GLU MET ASP GLU ALA ILE ILE GLN TYR ILE SEQRES 16 M 340 ARG LYS SER TYR ASN LEU MET ILE GLY GLU ARG THR ALA SEQRES 17 M 340 GLU ALA ILE LYS MET GLU ILE GLY SER ALA GLY ASN PRO SEQRES 18 M 340 GLU GLY ILE GLY ASN MET GLU ILE ARG GLY ARG ASP LEU SEQRES 19 M 340 LEU THR GLY LEU PRO LYS THR ILE GLU ILE SER ALA GLU SEQRES 20 M 340 GLU VAL ALA GLU ALA LEU ARG ASP THR VAL TYR ALA ILE SEQRES 21 M 340 VAL GLU SER VAL LYS ASN THR LEU GLU LYS THR PRO PRO SEQRES 22 M 340 GLU LEU ALA ALA ASP ILE MET ASP ARG GLY ILE VAL LEU SEQRES 23 M 340 THR GLY GLY GLY ALA LEU LEU ARG ASN LEU ASP LYS VAL SEQRES 24 M 340 ILE SER GLN GLU THR ASP MET PRO VAL ILE VAL ALA GLU SEQRES 25 M 340 ASN PRO LEU ASP CYS VAL ALA ILE GLY THR GLY LYS ALA SEQRES 26 M 340 LEU ASP HIS ILE ASP LEU PHE LYS ASN LYS ALA ARG ASP SEQRES 27 M 340 HIS ARG HET GTP M 401 32 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 HOH *6(H2 O) HELIX 1 AA1 GLY M 48 THR M 58 1 11 HELIX 2 AA2 ASP M 75 ILE M 91 1 17 HELIX 3 AA3 THR M 112 ALA M 126 1 15 HELIX 4 AA4 GLU M 136 ALA M 144 1 9 HELIX 5 AA5 ALA M 183 ASN M 200 1 18 HELIX 6 AA6 GLY M 204 GLY M 216 1 13 HELIX 7 AA7 ALA M 246 LEU M 253 1 8 HELIX 8 AA8 LEU M 253 LYS M 270 1 18 HELIX 9 AA9 PRO M 272 GLY M 283 1 12 HELIX 10 AB1 GLY M 288 LEU M 293 5 6 HELIX 11 AB2 ASN M 295 ASP M 305 1 11 HELIX 12 AB3 ASP M 316 ALA M 325 1 10 HELIX 13 AB4 HIS M 328 LYS M 333 1 6 SHEET 1 AA1 5 GLY M 26 PRO M 32 0 SHEET 2 AA1 5 ASN M 17 VAL M 22 -1 N THR M 18 O GLU M 31 SHEET 3 AA1 5 ASP M 8 LEU M 13 -1 N GLY M 10 O TYR M 21 SHEET 4 AA1 5 TYR M 102 VAL M 107 1 O MET M 104 N ILE M 11 SHEET 5 AA1 5 ALA M 131 GLU M 135 1 O ILE M 134 N VAL M 107 SHEET 1 AA2 3 ILE M 44 VAL M 47 0 SHEET 2 AA2 3 VAL M 35 GLN M 38 -1 N ALA M 36 O VAL M 45 SHEET 3 AA2 3 ILE M 62 LEU M 65 -1 O VAL M 63 N ILE M 37 SHEET 1 AA3 5 GLY M 173 ILE M 180 0 SHEET 2 AA3 5 THR M 164 SER M 170 -1 N THR M 164 O ILE M 180 SHEET 3 AA3 5 SER M 154 ILE M 159 -1 N ASP M 158 O GLU M 165 SHEET 4 AA3 5 ILE M 284 THR M 287 1 O THR M 287 N VAL M 157 SHEET 5 AA3 5 VAL M 308 VAL M 310 1 O ILE M 309 N ILE M 284 SHEET 1 AA4 3 LEU M 201 MET M 202 0 SHEET 2 AA4 3 ASN M 226 ASP M 233 -1 O ARG M 232 N MET M 202 SHEET 3 AA4 3 PRO M 239 SER M 245 -1 O ILE M 244 N MET M 227 CRYST1 46.140 61.410 50.920 90.00 111.82 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021673 0.000000 0.008677 0.00000 SCALE2 0.000000 0.016284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021154 0.00000 CONECT 2365 2366 2367 2368 2369 CONECT 2366 2365 CONECT 2367 2365 CONECT 2368 2365 CONECT 2369 2365 2370 CONECT 2370 2369 2371 2372 2373 CONECT 2371 2370 CONECT 2372 2370 CONECT 2373 2370 2374 CONECT 2374 2373 2375 2376 2377 CONECT 2375 2374 CONECT 2376 2374 CONECT 2377 2374 2378 CONECT 2378 2377 2379 CONECT 2379 2378 2380 2381 CONECT 2380 2379 2385 CONECT 2381 2379 2382 2383 CONECT 2382 2381 CONECT 2383 2381 2384 2385 CONECT 2384 2383 CONECT 2385 2380 2383 2386 CONECT 2386 2385 2387 2396 CONECT 2387 2386 2388 CONECT 2388 2387 2389 CONECT 2389 2388 2390 2396 CONECT 2390 2389 2391 2392 CONECT 2391 2390 CONECT 2392 2390 2393 CONECT 2393 2392 2394 2395 CONECT 2394 2393 CONECT 2395 2393 2396 CONECT 2396 2386 2389 2395 MASTER 246 0 1 13 16 0 0 6 2401 1 32 27 END