HEADER LYASE 04-JUL-22 8ABT TITLE CRYSTAL STRUCTURE OF NALDPA IN COMPLEX WITH THE PRODUCT ANALOG TITLE 2 RESVERATROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: SNOAL-LIKE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 STRAIN: ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC SOURCE 5 16084 / F199; SOURCE 6 GENE: SARO_2805; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIGNIN, LYASE, DEHYDRATASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,E.KUATSJAH,G.T.BECKHAM,J.E.MCGEEHAN REVDAT 1 01-FEB-23 8ABT 0 JRNL AUTH E.KUATSJAH,M.ZAHN,X.CHEN,R.KATO,D.J.HINCHEN,M.O.KONEV, JRNL AUTH 2 R.KATAHIRA,C.ORR,A.WAGNER,Y.ZOU,S.J.HAUGEN,K.J.RAMIREZ, JRNL AUTH 3 J.K.MICHENER,A.R.PICKFORD,N.KAMIMURA,E.MASAI,K.N.HOUK, JRNL AUTH 4 J.E.MCGEEHAN,G.T.BECKHAM JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF A JRNL TITL 2 SPHINGOMONAD DIARYLPROPANE LYASE FOR COFACTORLESS JRNL TITL 3 DEFORMYLATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 46120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 36652470 JRNL DOI 10.1073/PNAS.2212246120 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 110151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.027 REMARK 3 FREE R VALUE TEST SET COUNT : 5537 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7743 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 389 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3797 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09900 REMARK 3 B22 (A**2) : -0.09900 REMARK 3 B33 (A**2) : 0.32200 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.592 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4005 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3639 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5446 ; 1.826 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8359 ; 1.496 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 7.155 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;30.099 ;21.790 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;13.656 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.574 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4547 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 995 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 771 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 222 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1883 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 323 ; 0.205 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.037 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1888 ; 1.222 ; 1.537 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1887 ; 1.221 ; 1.536 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2358 ; 1.875 ; 2.300 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2359 ; 1.875 ; 2.302 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2117 ; 1.593 ; 1.720 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2102 ; 1.523 ; 1.700 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3085 ; 2.395 ; 2.526 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3062 ; 2.344 ; 2.494 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 239 NULL REMARK 3 2 B 6 B 239 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 240 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 RESIDUE RANGE : A 701 A 701 REMARK 3 RESIDUE RANGE : A 801 A 801 REMARK 3 RESIDUE RANGE : A 901 A 901 REMARK 3 RESIDUE RANGE : A 1101 A 1101 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5346 22.9680 -18.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.0020 T22: 0.0171 REMARK 3 T33: 0.0720 T12: 0.0008 REMARK 3 T13: -0.0069 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.1256 L22: 0.0664 REMARK 3 L33: 0.0569 L12: 0.0398 REMARK 3 L13: -0.0494 L23: 0.0159 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: 0.0219 S13: 0.0075 REMARK 3 S21: 0.0030 S22: -0.0071 S23: 0.0271 REMARK 3 S31: -0.0022 S32: -0.0301 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 241 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 RESIDUE RANGE : B 401 B 401 REMARK 3 RESIDUE RANGE : B 501 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0390 12.5489 18.5082 REMARK 3 T TENSOR REMARK 3 T11: 0.0137 T22: 0.0065 REMARK 3 T33: 0.0711 T12: -0.0054 REMARK 3 T13: -0.0026 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.1166 L22: 0.1152 REMARK 3 L33: 0.0347 L12: 0.0428 REMARK 3 L13: -0.0332 L23: -0.0478 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0042 S13: 0.0337 REMARK 3 S21: 0.0294 S22: -0.0055 S23: -0.0128 REMARK 3 S31: -0.0208 S32: 0.0094 S33: -0.0101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8ABT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292118027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-20; 23-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100; 45 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : DIAMOND; DIAMOND REMARK 200 BEAMLINE : I03; I23 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625; 2.7552 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M; DECTRIS REMARK 200 PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110449 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 51.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 2.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 2% PEG 400, 0.1 REMARK 280 M HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.77050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.77050 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.77050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -402.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 78.04500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 39.02250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 67.58895 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -238.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 307 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 307 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 B 304 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 B 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 563 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 595 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 570 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 595 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 241 REMARK 465 TRP A 242 REMARK 465 PRO A 243 REMARK 465 LEU A 244 REMARK 465 GLU A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 TRP B 242 REMARK 465 PRO B 243 REMARK 465 LEU B 244 REMARK 465 GLU B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 126 H ASP A 128 1.25 REMARK 500 HD1 HIS B 126 H ASP B 128 1.25 REMARK 500 H ASP A 172 HG1 THR A 180 1.32 REMARK 500 HH22 ARG B 162 O HOH B 404 1.45 REMARK 500 HZ2 LYS B 114 O HOH B 405 1.48 REMARK 500 H GLY B 136 O HOH B 410 1.56 REMARK 500 HZ2 LYS A 161 O HOH A 406 1.60 REMARK 500 OD1 ASP B 172 O1 STL B 301 1.62 REMARK 500 O HOH B 553 O HOH B 604 1.83 REMARK 500 O HOH A 553 O HOH A 584 2.00 REMARK 500 O3 SO4 A 306 O HOH A 401 2.10 REMARK 500 O3 SO4 B 303 O HOH B 401 2.11 REMARK 500 O HOH A 555 O HOH A 565 2.17 REMARK 500 O HOH A 552 O HOH A 605 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H ILE A 104 O2 SO4 A 308 2655 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 174 CD GLU A 174 OE2 0.095 REMARK 500 GLU B 174 CD GLU B 174 OE2 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 29 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 29 NE - CZ - NH2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 30 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 162 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 77 -76.39 -88.70 REMARK 500 LEU A 95 65.50 -151.91 REMARK 500 TRP A 211 131.35 -32.99 REMARK 500 ALA A 227 -133.46 41.69 REMARK 500 TRP B 77 -78.78 -85.68 REMARK 500 LEU B 95 65.72 -151.08 REMARK 500 HIS B 97 77.65 -100.57 REMARK 500 TRP B 211 132.52 -31.07 REMARK 500 ALA B 227 -135.57 41.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 8ABT A 1 243 UNP Q2G4I2 Q2G4I2_NOVAD 1 243 DBREF 8ABT B 1 243 UNP Q2G4I2 Q2G4I2_NOVAD 1 243 SEQADV 8ABT LEU A 244 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT GLU A 245 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS A 246 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS A 247 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS A 248 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS A 249 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS A 250 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS A 251 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT LEU B 244 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT GLU B 245 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS B 246 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS B 247 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS B 248 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS B 249 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS B 250 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABT HIS B 251 UNP Q2G4I2 EXPRESSION TAG SEQRES 1 A 251 MET THR ASP VAL ASN ALA SER SER GLU SER ARG LEU ALA SEQRES 2 A 251 ALA LEU GLU ALA ARG VAL THR GLU LEU GLU ASP LEU ASN SEQRES 3 A 251 ALA ILE ARG ARG LEU GLN TRP ALA TYR GLY TYR TYR ILE SEQRES 4 A 251 ASP TYR ASN ARG PRO GLU GLU VAL ALA GLY LEU PHE ALA SEQRES 5 A 251 LYS ASP GLY ALA VAL VAL PHE LEU SER GLY GLU TYR VAL SEQRES 6 A 251 GLY TYR GLU GLY VAL MET ARG LEU TYR GLY THR TRP PHE SEQRES 7 A 251 GLN ASN LEU PHE THR GLY GLY ARG ARG GLY PRO VAL HIS SEQRES 8 A 251 GLY LEU LEU LEU ASP HIS PHE GLN LEU GLN ASP VAL ILE SEQRES 9 A 251 THR ILE ALA PRO ASP GLY GLN THR ALA LYS GLY ARG PHE SEQRES 10 A 251 ARG GLY ILE LEU ALA GLY GLY TRP HIS ASP ASP ILE VAL SEQRES 11 A 251 LYS ASP LYS PRO GLU GLY MET PRO GLN GLN PHE TRP GLU SEQRES 12 A 251 SER GLY ILE TYR GLU ASN ASP TYR VAL LYS GLU ASP GLY SEQRES 13 A 251 VAL TRP LYS ILE LYS ARG LEU ASP TYR MET MET GLN TRP SEQRES 14 A 251 GLN ALA ASP TYR GLU THR GLY TRP SER LYS THR ILE ALA SEQRES 15 A 251 HIS LEU GLN PRO ALA ALA VAL CYS PHE PRO GLU ASN PRO SEQRES 16 A 251 ILE GLY PRO ASP ARG LEU LEU PRO GLU THR GLU VAL ARG SEQRES 17 A 251 GLN THR TRP PRO HIS ARG ALA GLU VAL PRO MET SER PHE SEQRES 18 A 251 ALA HIS PRO VAL LEU ALA LYS ALA PHE ALA VAL GLY GLU SEQRES 19 A 251 PHE THR LYS LEU GLN LYS LYS TRP PRO LEU GLU HIS HIS SEQRES 20 A 251 HIS HIS HIS HIS SEQRES 1 B 251 MET THR ASP VAL ASN ALA SER SER GLU SER ARG LEU ALA SEQRES 2 B 251 ALA LEU GLU ALA ARG VAL THR GLU LEU GLU ASP LEU ASN SEQRES 3 B 251 ALA ILE ARG ARG LEU GLN TRP ALA TYR GLY TYR TYR ILE SEQRES 4 B 251 ASP TYR ASN ARG PRO GLU GLU VAL ALA GLY LEU PHE ALA SEQRES 5 B 251 LYS ASP GLY ALA VAL VAL PHE LEU SER GLY GLU TYR VAL SEQRES 6 B 251 GLY TYR GLU GLY VAL MET ARG LEU TYR GLY THR TRP PHE SEQRES 7 B 251 GLN ASN LEU PHE THR GLY GLY ARG ARG GLY PRO VAL HIS SEQRES 8 B 251 GLY LEU LEU LEU ASP HIS PHE GLN LEU GLN ASP VAL ILE SEQRES 9 B 251 THR ILE ALA PRO ASP GLY GLN THR ALA LYS GLY ARG PHE SEQRES 10 B 251 ARG GLY ILE LEU ALA GLY GLY TRP HIS ASP ASP ILE VAL SEQRES 11 B 251 LYS ASP LYS PRO GLU GLY MET PRO GLN GLN PHE TRP GLU SEQRES 12 B 251 SER GLY ILE TYR GLU ASN ASP TYR VAL LYS GLU ASP GLY SEQRES 13 B 251 VAL TRP LYS ILE LYS ARG LEU ASP TYR MET MET GLN TRP SEQRES 14 B 251 GLN ALA ASP TYR GLU THR GLY TRP SER LYS THR ILE ALA SEQRES 15 B 251 HIS LEU GLN PRO ALA ALA VAL CYS PHE PRO GLU ASN PRO SEQRES 16 B 251 ILE GLY PRO ASP ARG LEU LEU PRO GLU THR GLU VAL ARG SEQRES 17 B 251 GLN THR TRP PRO HIS ARG ALA GLU VAL PRO MET SER PHE SEQRES 18 B 251 ALA HIS PRO VAL LEU ALA LYS ALA PHE ALA VAL GLY GLU SEQRES 19 B 251 PHE THR LYS LEU GLN LYS LYS TRP PRO LEU GLU HIS HIS SEQRES 20 B 251 HIS HIS HIS HIS HET STL A 301 29 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET STL B 301 29 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HETNAM STL RESVERATROL HETNAM SO4 SULFATE ION FORMUL 3 STL 2(C14 H12 O3) FORMUL 4 SO4 10(O4 S 2-) FORMUL 15 HOH *413(H2 O) HELIX 1 AA1 SER A 7 ASP A 40 1 34 HELIX 2 AA2 ARG A 43 LEU A 50 1 8 HELIX 3 AA3 GLY A 66 GLY A 75 1 10 HELIX 4 AA4 TRP A 77 GLY A 84 1 8 HELIX 5 AA5 ASP A 127 LYS A 133 5 7 HELIX 6 AA6 GLY A 176 THR A 180 5 5 HELIX 7 AA7 PRO A 203 VAL A 207 5 5 HELIX 8 AA8 LEU A 226 PHE A 230 5 5 HELIX 9 AA9 ALA A 231 LYS A 237 1 7 HELIX 10 AB1 SER B 7 ASP B 40 1 34 HELIX 11 AB2 ARG B 43 GLY B 49 1 7 HELIX 12 AB3 GLY B 66 GLY B 75 1 10 HELIX 13 AB4 TRP B 77 GLY B 84 1 8 HELIX 14 AB5 ASP B 127 LYS B 133 5 7 HELIX 15 AB6 GLY B 176 THR B 180 5 5 HELIX 16 AB7 PRO B 203 VAL B 207 5 5 HELIX 17 AB8 LEU B 226 PHE B 230 5 5 HELIX 18 AB9 ALA B 231 LYS B 237 1 7 SHEET 1 AA1 7 LEU A 93 ILE A 106 0 SHEET 2 AA1 7 THR A 112 TRP A 125 -1 O LYS A 114 N THR A 105 SHEET 3 AA1 7 GLN A 140 GLU A 154 -1 O GLU A 143 N LEU A 121 SHEET 4 AA1 7 VAL A 157 ASP A 172 -1 O MET A 166 N ILE A 146 SHEET 5 AA1 7 PHE A 51 PHE A 59 1 N VAL A 58 O LEU A 163 SHEET 6 AA1 7 GLY A 62 VAL A 65 -1 O TYR A 64 N VAL A 57 SHEET 7 AA1 7 ARG A 200 LEU A 201 -1 O ARG A 200 N GLU A 63 SHEET 1 AA2 7 LEU B 93 ILE B 106 0 SHEET 2 AA2 7 THR B 112 TRP B 125 -1 O LYS B 114 N THR B 105 SHEET 3 AA2 7 GLN B 140 GLU B 154 -1 O GLU B 143 N LEU B 121 SHEET 4 AA2 7 VAL B 157 ASP B 172 -1 O MET B 166 N ILE B 146 SHEET 5 AA2 7 PHE B 51 PHE B 59 1 N VAL B 58 O LEU B 163 SHEET 6 AA2 7 GLY B 62 VAL B 65 -1 O TYR B 64 N VAL B 57 SHEET 7 AA2 7 ARG B 200 LEU B 201 -1 O ARG B 200 N GLU B 63 CISPEP 1 GLY A 88 PRO A 89 0 -2.02 CISPEP 2 PHE A 191 PRO A 192 0 6.31 CISPEP 3 TRP A 211 PRO A 212 0 1.31 CISPEP 4 GLY B 88 PRO B 89 0 -0.75 CISPEP 5 PHE B 191 PRO B 192 0 2.51 CISPEP 6 TRP B 211 PRO B 212 0 1.57 CRYST1 78.045 78.045 159.541 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012813 0.007398 0.000000 0.00000 SCALE2 0.000000 0.014795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006268 0.00000