data_8ACC # _entry.id 8ACC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ACC pdb_00008acc 10.2210/pdb8acc/pdb WWPDB D_1292123942 ? ? EMDB EMD-15346 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'SPFMV VLP' EMD-15345 'other EM volume' EMDB 'CryoEM structure of sweet potato mild mottle virus VLP' EMD-15346 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ACC _pdbx_database_status.recvd_initial_deposition_date 2022-07-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category FoldIt _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Javed, A.' 1 0000-0002-5829-6057 'Byrne, B.M.' 2 0000-0001-8111-4605 'Ranson, N.' 3 0000-0002-3640-5275 'Lomonosoff, G.' 4 0000-0003-0700-906X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 433 _citation.page_last 433 _citation.title 'CryoEM and stability analysis of virus-like particles of potyvirus and ipomovirus infecting a common host.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-023-04799-x _citation.pdbx_database_id_PubMed 37076658 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chase, O.' 1 ? primary 'Javed, A.' 2 ? primary 'Byrne, M.J.' 3 ? primary 'Thuenemann, E.C.' 4 ? primary 'Lomonossoff, G.P.' 5 0000-0003-0700-906X primary 'Ranson, N.A.' 6 0000-0002-3640-5275 primary 'Lopez-Moya, J.J.' 7 0000-0002-3176-9651 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8ACC _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8ACC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Polyprotein 34282.840 1 ? ? ? ? 2 polymer nat 'Single-stranded RNA' 1485.872 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ASTSKTIEELQQEMEDLDADTTITVVQRETQKARIREQIETLRAQQMVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWI PRQQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIENTCRDYQVSMDVFMTTVLPAWIVNCIINGTSQERTNEHT WRAVIMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQAVAQYMNSLQAGKPFTVKGAVTAGYANVQDAWLGIDFLRD TMQLTTKQMEVKHQIIAANVTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD ; ;ASTSKTIEELQQEMEDLDADTTITVVQRETQKARIREQIETLRAQQMVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWI PRQQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIENTCRDYQVSMDVFMTTVLPAWIVNCIINGTSQERTNEHT WRAVIMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQAVAQYMNSLQAGKPFTVKGAVTAGYANVQDAWLGIDFLRD TMQLTTKQMEVKHQIIAANVTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD ; A ? 2 polyribonucleotide no no UUUUU UUUUU B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 THR n 1 4 SER n 1 5 LYS n 1 6 THR n 1 7 ILE n 1 8 GLU n 1 9 GLU n 1 10 LEU n 1 11 GLN n 1 12 GLN n 1 13 GLU n 1 14 MET n 1 15 GLU n 1 16 ASP n 1 17 LEU n 1 18 ASP n 1 19 ALA n 1 20 ASP n 1 21 THR n 1 22 THR n 1 23 ILE n 1 24 THR n 1 25 VAL n 1 26 VAL n 1 27 GLN n 1 28 ARG n 1 29 GLU n 1 30 THR n 1 31 GLN n 1 32 LYS n 1 33 ALA n 1 34 ARG n 1 35 ILE n 1 36 ARG n 1 37 GLU n 1 38 GLN n 1 39 ILE n 1 40 GLU n 1 41 THR n 1 42 LEU n 1 43 ARG n 1 44 ALA n 1 45 GLN n 1 46 GLN n 1 47 MET n 1 48 VAL n 1 49 ARG n 1 50 PRO n 1 51 SER n 1 52 GLU n 1 53 ALA n 1 54 GLN n 1 55 LEU n 1 56 GLN n 1 57 PRO n 1 58 ASP n 1 59 VAL n 1 60 THR n 1 61 PRO n 1 62 THR n 1 63 GLN n 1 64 ILE n 1 65 VAL n 1 66 THR n 1 67 PHE n 1 68 GLU n 1 69 PRO n 1 70 PRO n 1 71 ARG n 1 72 VAL n 1 73 THR n 1 74 GLY n 1 75 PHE n 1 76 GLY n 1 77 ALA n 1 78 LEU n 1 79 TRP n 1 80 ILE n 1 81 PRO n 1 82 ARG n 1 83 GLN n 1 84 GLN n 1 85 ARG n 1 86 ASN n 1 87 TYR n 1 88 MET n 1 89 THR n 1 90 THR n 1 91 ALA n 1 92 TYR n 1 93 ILE n 1 94 GLU n 1 95 LYS n 1 96 ILE n 1 97 LYS n 1 98 ALA n 1 99 TYR n 1 100 VAL n 1 101 PRO n 1 102 HIS n 1 103 SER n 1 104 ASN n 1 105 LEU n 1 106 ILE n 1 107 GLU n 1 108 SER n 1 109 GLY n 1 110 LEU n 1 111 ALA n 1 112 SER n 1 113 GLU n 1 114 ALA n 1 115 GLN n 1 116 LEU n 1 117 THR n 1 118 SER n 1 119 TRP n 1 120 ILE n 1 121 GLU n 1 122 ASN n 1 123 THR n 1 124 CYS n 1 125 ARG n 1 126 ASP n 1 127 TYR n 1 128 GLN n 1 129 VAL n 1 130 SER n 1 131 MET n 1 132 ASP n 1 133 VAL n 1 134 PHE n 1 135 MET n 1 136 THR n 1 137 THR n 1 138 VAL n 1 139 LEU n 1 140 PRO n 1 141 ALA n 1 142 TRP n 1 143 ILE n 1 144 VAL n 1 145 ASN n 1 146 CYS n 1 147 ILE n 1 148 ILE n 1 149 ASN n 1 150 GLY n 1 151 THR n 1 152 SER n 1 153 GLN n 1 154 GLU n 1 155 ARG n 1 156 THR n 1 157 ASN n 1 158 GLU n 1 159 HIS n 1 160 THR n 1 161 TRP n 1 162 ARG n 1 163 ALA n 1 164 VAL n 1 165 ILE n 1 166 MET n 1 167 ALA n 1 168 ASN n 1 169 MET n 1 170 GLU n 1 171 ASP n 1 172 GLN n 1 173 GLU n 1 174 VAL n 1 175 LEU n 1 176 TYR n 1 177 TYR n 1 178 PRO n 1 179 ILE n 1 180 LYS n 1 181 PRO n 1 182 ILE n 1 183 ILE n 1 184 VAL n 1 185 ASN n 1 186 ALA n 1 187 GLN n 1 188 PRO n 1 189 THR n 1 190 LEU n 1 191 ARG n 1 192 GLN n 1 193 VAL n 1 194 MET n 1 195 ARG n 1 196 HIS n 1 197 PHE n 1 198 GLY n 1 199 GLU n 1 200 GLN n 1 201 ALA n 1 202 VAL n 1 203 ALA n 1 204 GLN n 1 205 TYR n 1 206 MET n 1 207 ASN n 1 208 SER n 1 209 LEU n 1 210 GLN n 1 211 ALA n 1 212 GLY n 1 213 LYS n 1 214 PRO n 1 215 PHE n 1 216 THR n 1 217 VAL n 1 218 LYS n 1 219 GLY n 1 220 ALA n 1 221 VAL n 1 222 THR n 1 223 ALA n 1 224 GLY n 1 225 TYR n 1 226 ALA n 1 227 ASN n 1 228 VAL n 1 229 GLN n 1 230 ASP n 1 231 ALA n 1 232 TRP n 1 233 LEU n 1 234 GLY n 1 235 ILE n 1 236 ASP n 1 237 PHE n 1 238 LEU n 1 239 ARG n 1 240 ASP n 1 241 THR n 1 242 MET n 1 243 GLN n 1 244 LEU n 1 245 THR n 1 246 THR n 1 247 LYS n 1 248 GLN n 1 249 MET n 1 250 GLU n 1 251 VAL n 1 252 LYS n 1 253 HIS n 1 254 GLN n 1 255 ILE n 1 256 ILE n 1 257 ALA n 1 258 ALA n 1 259 ASN n 1 260 VAL n 1 261 THR n 1 262 ARG n 1 263 ARG n 1 264 LYS n 1 265 ILE n 1 266 ARG n 1 267 VAL n 1 268 PHE n 1 269 ALA n 1 270 LEU n 1 271 ALA n 1 272 ALA n 1 273 PRO n 1 274 GLY n 1 275 ASP n 1 276 GLY n 1 277 ASP n 1 278 GLU n 1 279 LEU n 1 280 ASP n 1 281 THR n 1 282 GLU n 1 283 ARG n 1 284 HIS n 1 285 VAL n 1 286 VAL n 1 287 ASP n 1 288 ASP n 1 289 VAL n 1 290 ALA n 1 291 ARG n 1 292 GLY n 1 293 ARG n 1 294 HIS n 1 295 SER n 1 296 LEU n 1 297 ARG n 1 298 GLY n 1 299 ALA n 1 300 GLN n 1 301 LEU n 1 302 ASP n 2 1 U n 2 2 U n 2 3 U n 2 4 U n 2 5 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 302 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sweet potato mild mottle virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 41459 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Nicotiana benthamiana' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4100 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 5 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Nicotiana tabacum' _entity_src_nat.pdbx_ncbi_taxonomy_id 4097 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q599X9_9POTY Q599X9 ? 1 ;ASTSKTIEELQQEMEDLDADTTITVVQRETQKARIREQIETLRAQQMVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWI PRQQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIENTCRDYQVSMDVFMTTVLPAWIVNCIINGTSQERTNEHT WRAVIMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQAVAQYMNSLQAGKPFTVKGAVTAGYANVQDAWLGIDFLRD TMQLTTKQMEVKHQIIAANVTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD ; 200 2 PDB 8ACC 8ACC ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ACC A 1 ? 302 ? Q599X9 200 ? 501 ? 1 302 2 2 8ACC B 1 ? 5 ? 8ACC 2 ? 6 ? 2 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ACC _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 55.25 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8ACC _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0019 ? 1825 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.4779 ? 2513 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0389 ? 303 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0023 ? 309 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 6.2353 ? 304 ? f_dihedral_angle_d ? ? # _struct.entry_id 8ACC _struct.title 'CryoEM structure of sweet potato mild mottle virus VLP' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ACC _struct_keywords.text 'Plant virus, coat protein, VLP, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 81 ? ARG A 85 ? PRO A 81 ARG A 85 5 ? 5 HELX_P HELX_P2 AA2 THR A 89 ? ALA A 98 ? THR A 89 ALA A 98 1 ? 10 HELX_P HELX_P3 AA3 SER A 112 ? GLN A 128 ? SER A 112 GLN A 128 1 ? 17 HELX_P HELX_P4 AA4 SER A 130 ? THR A 137 ? SER A 130 THR A 137 1 ? 8 HELX_P HELX_P5 AA5 THR A 137 ? ASN A 149 ? THR A 137 ASN A 149 1 ? 13 HELX_P HELX_P6 AA6 SER A 152 ? HIS A 159 ? SER A 152 HIS A 159 5 ? 8 HELX_P HELX_P7 AA7 ILE A 179 ? VAL A 184 ? ILE A 179 VAL A 184 1 ? 6 HELX_P HELX_P8 AA8 THR A 189 ? MET A 194 ? THR A 189 MET A 194 1 ? 6 HELX_P HELX_P9 AA9 PHE A 197 ? ALA A 211 ? PHE A 197 ALA A 211 1 ? 15 HELX_P HELX_P10 AB1 VAL A 217 ? GLY A 224 ? VAL A 217 GLY A 224 1 ? 8 HELX_P HELX_P11 AB2 THR A 245 ? ALA A 257 ? THR A 245 ALA A 257 1 ? 13 HELX_P HELX_P12 AB3 ALA A 258 ? ARG A 262 ? ALA A 258 ARG A 262 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 161 ? MET A 166 ? TRP A 161 MET A 166 AA1 2 ASP A 171 ? TYR A 177 ? ASP A 171 TYR A 177 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ALA _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 163 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 163 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LEU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 175 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 175 # _atom_sites.entry_id 8ACC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 LYS 5 5 ? ? ? A . n A 1 6 THR 6 6 ? ? ? A . n A 1 7 ILE 7 7 ? ? ? A . n A 1 8 GLU 8 8 ? ? ? A . n A 1 9 GLU 9 9 ? ? ? A . n A 1 10 LEU 10 10 ? ? ? A . n A 1 11 GLN 11 11 ? ? ? A . n A 1 12 GLN 12 12 ? ? ? A . n A 1 13 GLU 13 13 ? ? ? A . n A 1 14 MET 14 14 ? ? ? A . n A 1 15 GLU 15 15 ? ? ? A . n A 1 16 ASP 16 16 ? ? ? A . n A 1 17 LEU 17 17 ? ? ? A . n A 1 18 ASP 18 18 ? ? ? A . n A 1 19 ALA 19 19 ? ? ? A . n A 1 20 ASP 20 20 ? ? ? A . n A 1 21 THR 21 21 ? ? ? A . n A 1 22 THR 22 22 ? ? ? A . n A 1 23 ILE 23 23 ? ? ? A . n A 1 24 THR 24 24 ? ? ? A . n A 1 25 VAL 25 25 ? ? ? A . n A 1 26 VAL 26 26 ? ? ? A . n A 1 27 GLN 27 27 ? ? ? A . n A 1 28 ARG 28 28 ? ? ? A . n A 1 29 GLU 29 29 ? ? ? A . n A 1 30 THR 30 30 ? ? ? A . n A 1 31 GLN 31 31 ? ? ? A . n A 1 32 LYS 32 32 ? ? ? A . n A 1 33 ALA 33 33 ? ? ? A . n A 1 34 ARG 34 34 ? ? ? A . n A 1 35 ILE 35 35 ? ? ? A . n A 1 36 ARG 36 36 ? ? ? A . n A 1 37 GLU 37 37 ? ? ? A . n A 1 38 GLN 38 38 ? ? ? A . n A 1 39 ILE 39 39 ? ? ? A . n A 1 40 GLU 40 40 ? ? ? A . n A 1 41 THR 41 41 ? ? ? A . n A 1 42 LEU 42 42 ? ? ? A . n A 1 43 ARG 43 43 ? ? ? A . n A 1 44 ALA 44 44 ? ? ? A . n A 1 45 GLN 45 45 ? ? ? A . n A 1 46 GLN 46 46 ? ? ? A . n A 1 47 MET 47 47 ? ? ? A . n A 1 48 VAL 48 48 ? ? ? A . n A 1 49 ARG 49 49 ? ? ? A . n A 1 50 PRO 50 50 ? ? ? A . n A 1 51 SER 51 51 ? ? ? A . n A 1 52 GLU 52 52 ? ? ? A . n A 1 53 ALA 53 53 ? ? ? A . n A 1 54 GLN 54 54 ? ? ? A . n A 1 55 LEU 55 55 ? ? ? A . n A 1 56 GLN 56 56 ? ? ? A . n A 1 57 PRO 57 57 ? ? ? A . n A 1 58 ASP 58 58 ? ? ? A . n A 1 59 VAL 59 59 ? ? ? A . n A 1 60 THR 60 60 ? ? ? A . n A 1 61 PRO 61 61 ? ? ? A . n A 1 62 THR 62 62 ? ? ? A . n A 1 63 GLN 63 63 ? ? ? A . n A 1 64 ILE 64 64 ? ? ? A . n A 1 65 VAL 65 65 65 VAL ALA A . n A 1 66 THR 66 66 66 THR ALA A . n A 1 67 PHE 67 67 67 PHE ALA A . n A 1 68 GLU 68 68 68 GLU ALA A . n A 1 69 PRO 69 69 69 PRO ALA A . n A 1 70 PRO 70 70 70 PRO ALA A . n A 1 71 ARG 71 71 71 ARG ALA A . n A 1 72 VAL 72 72 72 VAL ALA A . n A 1 73 THR 73 73 73 THR ALA A . n A 1 74 GLY 74 74 74 GLY ALA A . n A 1 75 PHE 75 75 75 PHE ALA A . n A 1 76 GLY 76 76 76 GLY ALA A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 LEU 78 78 78 LEU ALA A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 HIS 102 102 102 HIS HIS A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 TRP 119 119 119 TRP TRP A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 CYS 124 124 124 CYS CYS A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 MET 131 131 131 MET MET A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 MET 135 135 135 MET MET A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 TRP 142 142 142 TRP TRP A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 CYS 146 146 146 CYS CYS A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 THR 151 151 151 THR THR A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 GLN 153 153 153 GLN GLN A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 HIS 159 159 159 HIS HIS A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 TRP 161 161 161 TRP TRP A . n A 1 162 ARG 162 162 162 ARG ARG A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 ILE 165 165 165 ILE ILE A . n A 1 166 MET 166 166 166 MET MET A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 ASN 168 168 168 ASN ASN A . n A 1 169 MET 169 169 169 MET MET A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 ASP 171 171 171 ASP ASP A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 TYR 176 176 176 TYR TYR A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 PRO 181 181 181 PRO PRO A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 ASN 185 185 185 ASN ASN A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 GLN 187 187 187 GLN GLN A . n A 1 188 PRO 188 188 188 PRO PRO A . n A 1 189 THR 189 189 189 THR THR A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 MET 194 194 194 MET MET A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 HIS 196 196 196 HIS HIS A . n A 1 197 PHE 197 197 197 PHE PHE A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 GLN 200 200 200 GLN GLN A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 VAL 202 202 202 VAL VAL A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 GLN 204 204 204 GLN GLN A . n A 1 205 TYR 205 205 205 TYR TYR A . n A 1 206 MET 206 206 206 MET MET A . n A 1 207 ASN 207 207 207 ASN ASN A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 GLN 210 210 210 GLN GLN A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 PRO 214 214 214 PRO PRO A . n A 1 215 PHE 215 215 215 PHE PHE A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 LYS 218 218 218 LYS LYS A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 THR 222 222 222 THR THR A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 TYR 225 225 225 TYR TYR A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 ASN 227 227 227 ASN ASN A . n A 1 228 VAL 228 228 228 VAL VAL A . n A 1 229 GLN 229 229 229 GLN GLN A . n A 1 230 ASP 230 230 230 ASP ASP A . n A 1 231 ALA 231 231 231 ALA ALA A . n A 1 232 TRP 232 232 232 TRP TRP A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 GLY 234 234 234 GLY GLY A . n A 1 235 ILE 235 235 235 ILE ILE A . n A 1 236 ASP 236 236 236 ASP ASP A . n A 1 237 PHE 237 237 237 PHE PHE A . n A 1 238 LEU 238 238 238 LEU LEU A . n A 1 239 ARG 239 239 239 ARG ARG A . n A 1 240 ASP 240 240 240 ASP ASP A . n A 1 241 THR 241 241 241 THR THR A . n A 1 242 MET 242 242 242 MET MET A . n A 1 243 GLN 243 243 243 GLN GLN A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 THR 245 245 245 THR THR A . n A 1 246 THR 246 246 246 THR THR A . n A 1 247 LYS 247 247 247 LYS LYS A . n A 1 248 GLN 248 248 248 GLN GLN A . n A 1 249 MET 249 249 249 MET MET A . n A 1 250 GLU 250 250 250 GLU GLU A . n A 1 251 VAL 251 251 251 VAL VAL A . n A 1 252 LYS 252 252 252 LYS LYS A . n A 1 253 HIS 253 253 253 HIS HIS A . n A 1 254 GLN 254 254 254 GLN GLN A . n A 1 255 ILE 255 255 255 ILE ILE A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 ALA 257 257 257 ALA ALA A . n A 1 258 ALA 258 258 258 ALA ALA A . n A 1 259 ASN 259 259 259 ASN ASN A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 THR 261 261 261 THR THR A . n A 1 262 ARG 262 262 262 ARG ARG A . n A 1 263 ARG 263 263 263 ARG ARG A . n A 1 264 LYS 264 264 264 LYS LYS A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 ARG 266 266 266 ARG ALA A . n A 1 267 VAL 267 267 267 VAL ALA A . n A 1 268 PHE 268 268 268 PHE ALA A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 LEU 270 270 270 LEU ALA A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 PRO 273 273 273 PRO ALA A . n A 1 274 GLY 274 274 274 GLY ALA A . n A 1 275 ASP 275 275 275 ASP ALA A . n A 1 276 GLY 276 276 276 GLY ALA A . n A 1 277 ASP 277 277 277 ASP ALA A . n A 1 278 GLU 278 278 278 GLU ALA A . n A 1 279 LEU 279 279 279 LEU ALA A . n A 1 280 ASP 280 280 280 ASP ALA A . n A 1 281 THR 281 281 281 THR ALA A . n A 1 282 GLU 282 282 282 GLU ALA A . n A 1 283 ARG 283 283 283 ARG ALA A . n A 1 284 HIS 284 284 284 HIS ALA A . n A 1 285 VAL 285 285 285 VAL ALA A . n A 1 286 VAL 286 286 286 VAL ALA A . n A 1 287 ASP 287 287 287 ASP ALA A . n A 1 288 ASP 288 288 288 ASP ALA A . n A 1 289 VAL 289 289 289 VAL ALA A . n A 1 290 ALA 290 290 290 ALA ALA A . n A 1 291 ARG 291 291 291 ARG ALA A . n A 1 292 GLY 292 292 292 GLY ALA A . n A 1 293 ARG 293 293 293 ARG ALA A . n A 1 294 HIS 294 294 294 HIS ALA A . n A 1 295 SER 295 295 295 SER ALA A . n A 1 296 LEU 296 296 ? ? ? A . n A 1 297 ARG 297 297 ? ? ? A . n A 1 298 GLY 298 298 ? ? ? A . n A 1 299 ALA 299 299 ? ? ? A . n A 1 300 GLN 300 300 ? ? ? A . n A 1 301 LEU 301 301 ? ? ? A . n A 1 302 ASP 302 302 ? ? ? A . n B 2 1 U 1 2 2 U U B . n B 2 2 U 2 3 3 U U B . n B 2 3 U 3 4 4 U U B . n B 2 4 U 4 5 5 U U B . n B 2 5 U 5 6 6 U U B . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 5 george.lomonossoff@jic.ac.uk George Lomonosoff ? 'principal investigator/group leader' 0000-0003-0700-906X 6 n.a.ranson@leeds.ac.uk Neil Ranson ? 'principal investigator/group leader' 0000-0002-3640-5275 7 juanjose.lopez@cragenomica.es Juan Lopez-Moya J 'principal investigator/group leader' 0000-0002-3176-9651 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-17 2 'Structure model' 1 1 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.gene_src_common_name' 2 2 'Structure model' '_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id' 3 2 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? 'Pavel Afonine' pafonine@lbl.gov ? ? ? ? Python/C++ https://www.phenix-online.org/ ? phenix.real_space_refine ? ? program 1.19.2_4158 1 ? refinement ? ? 'Paul D. Adams' pdadams@lbl.gov ? ? ? ? Python/C++ https://www.phenix-online.org/ ? PHENIX ? ? program 1.19.2_4158 2 # _em_3d_fitting.entry_id 8ACC _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 123.7 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria 'Correlation Coefficient' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 8ACC _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 38705 _em_3d_reconstruction.resolution 2.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Sweet potato mild mottle virus' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list '1, 2' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 8ACC _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 14 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 8ACC _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter 70 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate SPECIES _em_virus_entity.virus_type 'VIRUS-LIKE PARTICLE' _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details '3ul of sample applied to each grid.' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 8ACC _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 8ACC _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PRO 69 ? ? CA A PRO 69 ? ? CB A PRO 69 ? ? 110.52 103.30 7.22 1.20 N 2 1 OP1 B U 4 ? ? P B U 4 ? ? OP2 B U 4 ? ? 109.53 119.60 -10.07 1.50 N 3 1 OP1 B U 6 ? ? P B U 6 ? ? OP2 B U 6 ? ? 109.32 119.60 -10.28 1.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 69 ? ? 56.81 -165.64 2 1 ARG A 71 ? ? 49.40 -113.02 3 1 PHE A 75 ? ? 45.90 -108.22 4 1 HIS A 159 ? ? 72.39 -7.01 5 1 PRO A 181 ? ? -67.39 2.23 6 1 PRO A 188 ? ? -91.06 57.84 7 1 THR A 189 ? ? 67.12 149.84 8 1 LEU A 233 ? ? 73.34 -7.06 9 1 LEU A 270 ? ? 53.90 -166.32 10 1 ASP A 277 ? ? 70.99 140.56 11 1 GLU A 282 ? ? -166.01 -169.72 12 1 ARG A 283 ? ? 64.82 178.30 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 65 ? CG1 ? A VAL 65 CG1 2 1 Y 1 A VAL 65 ? CG2 ? A VAL 65 CG2 3 1 Y 1 A THR 66 ? OG1 ? A THR 66 OG1 4 1 Y 1 A THR 66 ? CG2 ? A THR 66 CG2 5 1 Y 1 A PHE 67 ? CG ? A PHE 67 CG 6 1 Y 1 A PHE 67 ? CD1 ? A PHE 67 CD1 7 1 Y 1 A PHE 67 ? CD2 ? A PHE 67 CD2 8 1 Y 1 A PHE 67 ? CE1 ? A PHE 67 CE1 9 1 Y 1 A PHE 67 ? CE2 ? A PHE 67 CE2 10 1 Y 1 A PHE 67 ? CZ ? A PHE 67 CZ 11 1 Y 1 A GLU 68 ? CG ? A GLU 68 CG 12 1 Y 1 A GLU 68 ? CD ? A GLU 68 CD 13 1 Y 1 A GLU 68 ? OE1 ? A GLU 68 OE1 14 1 Y 1 A GLU 68 ? OE2 ? A GLU 68 OE2 15 1 Y 1 A PRO 69 ? CG ? A PRO 69 CG 16 1 Y 1 A PRO 69 ? CD ? A PRO 69 CD 17 1 Y 1 A PRO 70 ? CG ? A PRO 70 CG 18 1 Y 1 A PRO 70 ? CD ? A PRO 70 CD 19 1 Y 1 A ARG 71 ? CG ? A ARG 71 CG 20 1 Y 1 A ARG 71 ? CD ? A ARG 71 CD 21 1 Y 1 A ARG 71 ? NE ? A ARG 71 NE 22 1 Y 1 A ARG 71 ? CZ ? A ARG 71 CZ 23 1 Y 1 A ARG 71 ? NH1 ? A ARG 71 NH1 24 1 Y 1 A ARG 71 ? NH2 ? A ARG 71 NH2 25 1 Y 1 A VAL 72 ? CG1 ? A VAL 72 CG1 26 1 Y 1 A VAL 72 ? CG2 ? A VAL 72 CG2 27 1 Y 1 A THR 73 ? OG1 ? A THR 73 OG1 28 1 Y 1 A THR 73 ? CG2 ? A THR 73 CG2 29 1 Y 1 A PHE 75 ? CG ? A PHE 75 CG 30 1 Y 1 A PHE 75 ? CD1 ? A PHE 75 CD1 31 1 Y 1 A PHE 75 ? CD2 ? A PHE 75 CD2 32 1 Y 1 A PHE 75 ? CE1 ? A PHE 75 CE1 33 1 Y 1 A PHE 75 ? CE2 ? A PHE 75 CE2 34 1 Y 1 A PHE 75 ? CZ ? A PHE 75 CZ 35 1 Y 1 A LEU 78 ? CG ? A LEU 78 CG 36 1 Y 1 A LEU 78 ? CD1 ? A LEU 78 CD1 37 1 Y 1 A LEU 78 ? CD2 ? A LEU 78 CD2 38 1 Y 1 A GLU 94 ? CG ? A GLU 94 CG 39 1 Y 1 A GLU 94 ? CD ? A GLU 94 CD 40 1 Y 1 A GLU 94 ? OE1 ? A GLU 94 OE1 41 1 Y 1 A GLU 94 ? OE2 ? A GLU 94 OE2 42 1 Y 1 A SER 118 ? OG ? A SER 118 OG 43 1 Y 1 A GLU 121 ? CG ? A GLU 121 CG 44 1 Y 1 A GLU 121 ? CD ? A GLU 121 CD 45 1 Y 1 A GLU 121 ? OE1 ? A GLU 121 OE1 46 1 Y 1 A GLU 121 ? OE2 ? A GLU 121 OE2 47 1 Y 1 A ASN 149 ? CG ? A ASN 149 CG 48 1 Y 1 A ASN 149 ? OD1 ? A ASN 149 OD1 49 1 Y 1 A ASN 149 ? ND2 ? A ASN 149 ND2 50 1 Y 1 A GLN 172 ? CG ? A GLN 172 CG 51 1 Y 1 A GLN 172 ? CD ? A GLN 172 CD 52 1 Y 1 A GLN 172 ? OE1 ? A GLN 172 OE1 53 1 Y 1 A GLN 172 ? NE2 ? A GLN 172 NE2 54 1 Y 1 A ARG 191 ? CG ? A ARG 191 CG 55 1 Y 1 A ARG 191 ? CD ? A ARG 191 CD 56 1 Y 1 A ARG 191 ? NE ? A ARG 191 NE 57 1 Y 1 A ARG 191 ? CZ ? A ARG 191 CZ 58 1 Y 1 A ARG 191 ? NH1 ? A ARG 191 NH1 59 1 Y 1 A ARG 191 ? NH2 ? A ARG 191 NH2 60 1 Y 1 A MET 206 ? CG ? A MET 206 CG 61 1 Y 1 A MET 206 ? SD ? A MET 206 SD 62 1 Y 1 A MET 206 ? CE ? A MET 206 CE 63 1 Y 1 A LYS 213 ? CG ? A LYS 213 CG 64 1 Y 1 A LYS 213 ? CD ? A LYS 213 CD 65 1 Y 1 A LYS 213 ? CE ? A LYS 213 CE 66 1 Y 1 A LYS 213 ? NZ ? A LYS 213 NZ 67 1 Y 1 A LYS 218 ? CG ? A LYS 218 CG 68 1 Y 1 A LYS 218 ? CD ? A LYS 218 CD 69 1 Y 1 A LYS 218 ? CE ? A LYS 218 CE 70 1 Y 1 A LYS 218 ? NZ ? A LYS 218 NZ 71 1 Y 1 A GLN 229 ? CG ? A GLN 229 CG 72 1 Y 1 A GLN 229 ? CD ? A GLN 229 CD 73 1 Y 1 A GLN 229 ? OE1 ? A GLN 229 OE1 74 1 Y 1 A GLN 229 ? NE2 ? A GLN 229 NE2 75 1 Y 1 A LYS 252 ? CG ? A LYS 252 CG 76 1 Y 1 A LYS 252 ? CD ? A LYS 252 CD 77 1 Y 1 A LYS 252 ? CE ? A LYS 252 CE 78 1 Y 1 A LYS 252 ? NZ ? A LYS 252 NZ 79 1 Y 1 A ARG 266 ? CG ? A ARG 266 CG 80 1 Y 1 A ARG 266 ? CD ? A ARG 266 CD 81 1 Y 1 A ARG 266 ? NE ? A ARG 266 NE 82 1 Y 1 A ARG 266 ? CZ ? A ARG 266 CZ 83 1 Y 1 A ARG 266 ? NH1 ? A ARG 266 NH1 84 1 Y 1 A ARG 266 ? NH2 ? A ARG 266 NH2 85 1 Y 1 A VAL 267 ? CG1 ? A VAL 267 CG1 86 1 Y 1 A VAL 267 ? CG2 ? A VAL 267 CG2 87 1 Y 1 A PHE 268 ? CG ? A PHE 268 CG 88 1 Y 1 A PHE 268 ? CD1 ? A PHE 268 CD1 89 1 Y 1 A PHE 268 ? CD2 ? A PHE 268 CD2 90 1 Y 1 A PHE 268 ? CE1 ? A PHE 268 CE1 91 1 Y 1 A PHE 268 ? CE2 ? A PHE 268 CE2 92 1 Y 1 A PHE 268 ? CZ ? A PHE 268 CZ 93 1 Y 1 A LEU 270 ? CG ? A LEU 270 CG 94 1 Y 1 A LEU 270 ? CD1 ? A LEU 270 CD1 95 1 Y 1 A LEU 270 ? CD2 ? A LEU 270 CD2 96 1 Y 1 A PRO 273 ? CG ? A PRO 273 CG 97 1 Y 1 A PRO 273 ? CD ? A PRO 273 CD 98 1 Y 1 A ASP 275 ? CG ? A ASP 275 CG 99 1 Y 1 A ASP 275 ? OD1 ? A ASP 275 OD1 100 1 Y 1 A ASP 275 ? OD2 ? A ASP 275 OD2 101 1 Y 1 A ASP 277 ? CG ? A ASP 277 CG 102 1 Y 1 A ASP 277 ? OD1 ? A ASP 277 OD1 103 1 Y 1 A ASP 277 ? OD2 ? A ASP 277 OD2 104 1 Y 1 A GLU 278 ? CG ? A GLU 278 CG 105 1 Y 1 A GLU 278 ? CD ? A GLU 278 CD 106 1 Y 1 A GLU 278 ? OE1 ? A GLU 278 OE1 107 1 Y 1 A GLU 278 ? OE2 ? A GLU 278 OE2 108 1 Y 1 A LEU 279 ? CG ? A LEU 279 CG 109 1 Y 1 A LEU 279 ? CD1 ? A LEU 279 CD1 110 1 Y 1 A LEU 279 ? CD2 ? A LEU 279 CD2 111 1 Y 1 A ASP 280 ? CG ? A ASP 280 CG 112 1 Y 1 A ASP 280 ? OD1 ? A ASP 280 OD1 113 1 Y 1 A ASP 280 ? OD2 ? A ASP 280 OD2 114 1 Y 1 A THR 281 ? OG1 ? A THR 281 OG1 115 1 Y 1 A THR 281 ? CG2 ? A THR 281 CG2 116 1 Y 1 A GLU 282 ? CG ? A GLU 282 CG 117 1 Y 1 A GLU 282 ? CD ? A GLU 282 CD 118 1 Y 1 A GLU 282 ? OE1 ? A GLU 282 OE1 119 1 Y 1 A GLU 282 ? OE2 ? A GLU 282 OE2 120 1 Y 1 A ARG 283 ? CG ? A ARG 283 CG 121 1 Y 1 A ARG 283 ? CD ? A ARG 283 CD 122 1 Y 1 A ARG 283 ? NE ? A ARG 283 NE 123 1 Y 1 A ARG 283 ? CZ ? A ARG 283 CZ 124 1 Y 1 A ARG 283 ? NH1 ? A ARG 283 NH1 125 1 Y 1 A ARG 283 ? NH2 ? A ARG 283 NH2 126 1 Y 1 A HIS 284 ? CG ? A HIS 284 CG 127 1 Y 1 A HIS 284 ? ND1 ? A HIS 284 ND1 128 1 Y 1 A HIS 284 ? CD2 ? A HIS 284 CD2 129 1 Y 1 A HIS 284 ? CE1 ? A HIS 284 CE1 130 1 Y 1 A HIS 284 ? NE2 ? A HIS 284 NE2 131 1 Y 1 A VAL 285 ? CG1 ? A VAL 285 CG1 132 1 Y 1 A VAL 285 ? CG2 ? A VAL 285 CG2 133 1 Y 1 A VAL 286 ? CG1 ? A VAL 286 CG1 134 1 Y 1 A VAL 286 ? CG2 ? A VAL 286 CG2 135 1 Y 1 A ASP 287 ? CG ? A ASP 287 CG 136 1 Y 1 A ASP 287 ? OD1 ? A ASP 287 OD1 137 1 Y 1 A ASP 287 ? OD2 ? A ASP 287 OD2 138 1 Y 1 A ASP 288 ? CG ? A ASP 288 CG 139 1 Y 1 A ASP 288 ? OD1 ? A ASP 288 OD1 140 1 Y 1 A ASP 288 ? OD2 ? A ASP 288 OD2 141 1 Y 1 A VAL 289 ? CG1 ? A VAL 289 CG1 142 1 Y 1 A VAL 289 ? CG2 ? A VAL 289 CG2 143 1 Y 1 A ARG 291 ? CG ? A ARG 291 CG 144 1 Y 1 A ARG 291 ? CD ? A ARG 291 CD 145 1 Y 1 A ARG 291 ? NE ? A ARG 291 NE 146 1 Y 1 A ARG 291 ? CZ ? A ARG 291 CZ 147 1 Y 1 A ARG 291 ? NH1 ? A ARG 291 NH1 148 1 Y 1 A ARG 291 ? NH2 ? A ARG 291 NH2 149 1 Y 1 A ARG 293 ? CG ? A ARG 293 CG 150 1 Y 1 A ARG 293 ? CD ? A ARG 293 CD 151 1 Y 1 A ARG 293 ? NE ? A ARG 293 NE 152 1 Y 1 A ARG 293 ? CZ ? A ARG 293 CZ 153 1 Y 1 A ARG 293 ? NH1 ? A ARG 293 NH1 154 1 Y 1 A ARG 293 ? NH2 ? A ARG 293 NH2 155 1 Y 1 A HIS 294 ? CG ? A HIS 294 CG 156 1 Y 1 A HIS 294 ? ND1 ? A HIS 294 ND1 157 1 Y 1 A HIS 294 ? CD2 ? A HIS 294 CD2 158 1 Y 1 A HIS 294 ? CE1 ? A HIS 294 CE1 159 1 Y 1 A HIS 294 ? NE2 ? A HIS 294 NE2 160 1 Y 1 A SER 295 ? OG ? A SER 295 OG 161 1 Y 1 B U 3 ? OP2 ? B U 2 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A LYS 5 ? A LYS 5 6 1 Y 1 A THR 6 ? A THR 6 7 1 Y 1 A ILE 7 ? A ILE 7 8 1 Y 1 A GLU 8 ? A GLU 8 9 1 Y 1 A GLU 9 ? A GLU 9 10 1 Y 1 A LEU 10 ? A LEU 10 11 1 Y 1 A GLN 11 ? A GLN 11 12 1 Y 1 A GLN 12 ? A GLN 12 13 1 Y 1 A GLU 13 ? A GLU 13 14 1 Y 1 A MET 14 ? A MET 14 15 1 Y 1 A GLU 15 ? A GLU 15 16 1 Y 1 A ASP 16 ? A ASP 16 17 1 Y 1 A LEU 17 ? A LEU 17 18 1 Y 1 A ASP 18 ? A ASP 18 19 1 Y 1 A ALA 19 ? A ALA 19 20 1 Y 1 A ASP 20 ? A ASP 20 21 1 Y 1 A THR 21 ? A THR 21 22 1 Y 1 A THR 22 ? A THR 22 23 1 Y 1 A ILE 23 ? A ILE 23 24 1 Y 1 A THR 24 ? A THR 24 25 1 Y 1 A VAL 25 ? A VAL 25 26 1 Y 1 A VAL 26 ? A VAL 26 27 1 Y 1 A GLN 27 ? A GLN 27 28 1 Y 1 A ARG 28 ? A ARG 28 29 1 Y 1 A GLU 29 ? A GLU 29 30 1 Y 1 A THR 30 ? A THR 30 31 1 Y 1 A GLN 31 ? A GLN 31 32 1 Y 1 A LYS 32 ? A LYS 32 33 1 Y 1 A ALA 33 ? A ALA 33 34 1 Y 1 A ARG 34 ? A ARG 34 35 1 Y 1 A ILE 35 ? A ILE 35 36 1 Y 1 A ARG 36 ? A ARG 36 37 1 Y 1 A GLU 37 ? A GLU 37 38 1 Y 1 A GLN 38 ? A GLN 38 39 1 Y 1 A ILE 39 ? A ILE 39 40 1 Y 1 A GLU 40 ? A GLU 40 41 1 Y 1 A THR 41 ? A THR 41 42 1 Y 1 A LEU 42 ? A LEU 42 43 1 Y 1 A ARG 43 ? A ARG 43 44 1 Y 1 A ALA 44 ? A ALA 44 45 1 Y 1 A GLN 45 ? A GLN 45 46 1 Y 1 A GLN 46 ? A GLN 46 47 1 Y 1 A MET 47 ? A MET 47 48 1 Y 1 A VAL 48 ? A VAL 48 49 1 Y 1 A ARG 49 ? A ARG 49 50 1 Y 1 A PRO 50 ? A PRO 50 51 1 Y 1 A SER 51 ? A SER 51 52 1 Y 1 A GLU 52 ? A GLU 52 53 1 Y 1 A ALA 53 ? A ALA 53 54 1 Y 1 A GLN 54 ? A GLN 54 55 1 Y 1 A LEU 55 ? A LEU 55 56 1 Y 1 A GLN 56 ? A GLN 56 57 1 Y 1 A PRO 57 ? A PRO 57 58 1 Y 1 A ASP 58 ? A ASP 58 59 1 Y 1 A VAL 59 ? A VAL 59 60 1 Y 1 A THR 60 ? A THR 60 61 1 Y 1 A PRO 61 ? A PRO 61 62 1 Y 1 A THR 62 ? A THR 62 63 1 Y 1 A GLN 63 ? A GLN 63 64 1 Y 1 A ILE 64 ? A ILE 64 65 1 Y 1 A LEU 296 ? A LEU 296 66 1 Y 1 A ARG 297 ? A ARG 297 67 1 Y 1 A GLY 298 ? A GLY 298 68 1 Y 1 A ALA 299 ? A ALA 299 69 1 Y 1 A GLN 300 ? A GLN 300 70 1 Y 1 A LEU 301 ? A LEU 301 71 1 Y 1 A ASP 302 ? A ASP 302 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 U OP3 O N N 369 U P P N N 370 U OP1 O N N 371 U OP2 O N N 372 U "O5'" O N N 373 U "C5'" C N N 374 U "C4'" C N R 375 U "O4'" O N N 376 U "C3'" C N S 377 U "O3'" O N N 378 U "C2'" C N R 379 U "O2'" O N N 380 U "C1'" C N R 381 U N1 N N N 382 U C2 C N N 383 U O2 O N N 384 U N3 N N N 385 U C4 C N N 386 U O4 O N N 387 U C5 C N N 388 U C6 C N N 389 U HOP3 H N N 390 U HOP2 H N N 391 U "H5'" H N N 392 U "H5''" H N N 393 U "H4'" H N N 394 U "H3'" H N N 395 U "HO3'" H N N 396 U "H2'" H N N 397 U "HO2'" H N N 398 U "H1'" H N N 399 U H3 H N N 400 U H5 H N N 401 U H6 H N N 402 VAL N N N N 403 VAL CA C N S 404 VAL C C N N 405 VAL O O N N 406 VAL CB C N N 407 VAL CG1 C N N 408 VAL CG2 C N N 409 VAL OXT O N N 410 VAL H H N N 411 VAL H2 H N N 412 VAL HA H N N 413 VAL HB H N N 414 VAL HG11 H N N 415 VAL HG12 H N N 416 VAL HG13 H N N 417 VAL HG21 H N N 418 VAL HG22 H N N 419 VAL HG23 H N N 420 VAL HXT H N N 421 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 U OP3 P sing N N 356 U OP3 HOP3 sing N N 357 U P OP1 doub N N 358 U P OP2 sing N N 359 U P "O5'" sing N N 360 U OP2 HOP2 sing N N 361 U "O5'" "C5'" sing N N 362 U "C5'" "C4'" sing N N 363 U "C5'" "H5'" sing N N 364 U "C5'" "H5''" sing N N 365 U "C4'" "O4'" sing N N 366 U "C4'" "C3'" sing N N 367 U "C4'" "H4'" sing N N 368 U "O4'" "C1'" sing N N 369 U "C3'" "O3'" sing N N 370 U "C3'" "C2'" sing N N 371 U "C3'" "H3'" sing N N 372 U "O3'" "HO3'" sing N N 373 U "C2'" "O2'" sing N N 374 U "C2'" "C1'" sing N N 375 U "C2'" "H2'" sing N N 376 U "O2'" "HO2'" sing N N 377 U "C1'" N1 sing N N 378 U "C1'" "H1'" sing N N 379 U N1 C2 sing N N 380 U N1 C6 sing N N 381 U C2 O2 doub N N 382 U C2 N3 sing N N 383 U N3 C4 sing N N 384 U N3 H3 sing N N 385 U C4 O4 doub N N 386 U C4 C5 sing N N 387 U C5 C6 doub N N 388 U C5 H5 sing N N 389 U C6 H6 sing N N 390 VAL N CA sing N N 391 VAL N H sing N N 392 VAL N H2 sing N N 393 VAL CA C sing N N 394 VAL CA CB sing N N 395 VAL CA HA sing N N 396 VAL C O doub N N 397 VAL C OXT sing N N 398 VAL CB CG1 sing N N 399 VAL CB CG2 sing N N 400 VAL CB HB sing N N 401 VAL CG1 HG11 sing N N 402 VAL CG1 HG12 sing N N 403 VAL CG1 HG13 sing N N 404 VAL CG2 HG21 sing N N 405 VAL CG2 HG22 sing N N 406 VAL CG2 HG23 sing N N 407 VAL OXT HXT sing N N 408 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration 50 _em_buffer_component.concentration_units mM _em_buffer_component.formula NaPO4 _em_buffer_component.name 'Sodium phosphate' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 38 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 41459 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Sweet potato mild mottle virus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 4100 _em_entity_assembly_recombinant.organism 'Nicotiana benthamiana' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 41.29 _em_helical_entity.axial_rise_per_subunit 3.97 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 1 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 2260 _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 329573 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 3.1 1 ? ? 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? RELION 3.1 1 ? ? 12 RECONSTRUCTION ? RELION 3.1 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.19 ? 1 ? 14 'MODEL REFINEMENT' ? Coot ? ? 1 ? 15 'MODEL REFINEMENT' ? ISOLDE ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.id 1 _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.ncbi_tax_id 4120 _em_virus_natural_host.organism 'Ipomoea batatas' _em_virus_natural_host.strain ? # _em_virus_shell.id 1 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.diameter 130 _em_virus_shell.name ? _em_virus_shell.triangulation ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministerio de Ciencia e Innovacion (MCIN)' Spain PID2019-105692RB-100 1 'Ministerio de Ciencia e Innovacion (MCIN)' Spain CEX2019-000902-S 2 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' BB/R001669/1 3 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' BB/T004703/1 4 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 #