HEADER IMMUNE SYSTEM 05-JUL-22 8ACI TITLE STRUCTURE OF ARG-117 FAB IN COMPLEX WITH A FRAGMENT OF COMPLEMENT C2, TITLE 2 NEUTRAL PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C2B FRAGMENT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ARGX-117 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NANOBODY SPECIFIC FOR KAPPA LIGHT CHAIN OF FAB; COMPND 11 CHAIN: K; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: ARGX-117 FAB LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 19 ORGANISM_TAXID: 9844; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS INNATE IMMUNE SYSTEM, ANTIBODY, COMPLEMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.G.OLESEN,G.R.ANDERSEN REVDAT 1 17-JAN-24 8ACI 0 JRNL AUTH H.G.OLESEN,G.R.ANDERSEN JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF ARGX-117, A CALCIUM- AND JRNL TITL 2 PH-DEPENDENT CLINICAL PHASE COMPLEMENT C2 BLOCKING ANTIBODY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 79404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1600 - 5.6100 1.00 2902 164 0.2011 0.2295 REMARK 3 2 5.6100 - 4.4600 1.00 2772 156 0.1468 0.1418 REMARK 3 3 4.4600 - 3.8900 1.00 2763 140 0.1495 0.1445 REMARK 3 4 3.8900 - 3.5400 1.00 2728 143 0.1678 0.1742 REMARK 3 5 3.5400 - 3.2800 1.00 2710 142 0.1796 0.2005 REMARK 3 6 3.2800 - 3.0900 1.00 2707 155 0.1868 0.1994 REMARK 3 7 3.0900 - 2.9400 1.00 2685 155 0.2073 0.2075 REMARK 3 8 2.9400 - 2.8100 1.00 2745 119 0.2155 0.2323 REMARK 3 9 2.8100 - 2.7000 1.00 2690 139 0.2030 0.2245 REMARK 3 10 2.7000 - 2.6100 1.00 2666 147 0.2070 0.2108 REMARK 3 11 2.6100 - 2.5300 1.00 2683 147 0.1877 0.2503 REMARK 3 12 2.5300 - 2.4500 1.00 2694 138 0.1942 0.2385 REMARK 3 13 2.4500 - 2.3900 1.00 2695 136 0.1913 0.2304 REMARK 3 14 2.3900 - 2.3300 1.00 2662 147 0.1991 0.2234 REMARK 3 15 2.3300 - 2.2800 1.00 2683 126 0.2025 0.2136 REMARK 3 16 2.2800 - 2.2300 1.00 2669 158 0.2061 0.2065 REMARK 3 17 2.2300 - 2.1800 1.00 2690 132 0.2113 0.2057 REMARK 3 18 2.1800 - 2.1400 1.00 2671 130 0.2054 0.2279 REMARK 3 19 2.1400 - 2.1100 1.00 2643 146 0.2142 0.2500 REMARK 3 20 2.1100 - 2.0700 1.00 2665 136 0.2136 0.2357 REMARK 3 21 2.0700 - 2.0400 1.00 2699 128 0.2151 0.2359 REMARK 3 22 2.0400 - 2.0000 1.00 2663 153 0.2192 0.2315 REMARK 3 23 2.0000 - 1.9800 1.00 2658 140 0.2250 0.2560 REMARK 3 24 1.9800 - 1.9500 1.00 2670 141 0.2448 0.2683 REMARK 3 25 1.9500 - 1.9200 1.00 2654 140 0.2704 0.3124 REMARK 3 26 1.9200 - 1.9000 1.00 2658 140 0.3008 0.3202 REMARK 3 27 1.9000 - 1.8700 1.00 2671 141 0.3659 0.3605 REMARK 3 28 1.8700 - 1.8500 1.00 2631 138 0.4138 0.4468 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5485 REMARK 3 ANGLE : 0.975 7446 REMARK 3 CHIRALITY : 0.064 812 REMARK 3 PLANARITY : 0.008 970 REMARK 3 DIHEDRAL : 13.158 1987 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 39.9842 25.0337 55.4873 REMARK 3 T TENSOR REMARK 3 T11: 0.6459 T22: 0.4194 REMARK 3 T33: 0.3955 T12: 0.0090 REMARK 3 T13: -0.0848 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.9975 L22: 4.5437 REMARK 3 L33: 3.9745 L12: -0.7965 REMARK 3 L13: 0.6358 L23: 0.2040 REMARK 3 S TENSOR REMARK 3 S11: -0.1470 S12: -0.4994 S13: -0.3364 REMARK 3 S21: 1.0378 S22: 0.1179 S23: -0.0871 REMARK 3 S31: 0.5703 S32: 0.2305 S33: -0.0146 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): 21.0500 5.3935 23.1026 REMARK 3 T TENSOR REMARK 3 T11: 0.3572 T22: 0.3506 REMARK 3 T33: 0.3805 T12: 0.0210 REMARK 3 T13: -0.0139 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 1.7097 L22: 1.3467 REMARK 3 L33: 2.1826 L12: 0.6818 REMARK 3 L13: 1.4382 L23: 1.0437 REMARK 3 S TENSOR REMARK 3 S11: 0.1603 S12: -0.0011 S13: -0.1147 REMARK 3 S21: 0.1794 S22: -0.0053 S23: -0.0560 REMARK 3 S31: 0.1413 S32: -0.0375 S33: -0.1507 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN L REMARK 3 ORIGIN FOR THE GROUP (A): 14.4808 19.5516 14.2217 REMARK 3 T TENSOR REMARK 3 T11: 0.3163 T22: 0.3006 REMARK 3 T33: 0.3323 T12: 0.0175 REMARK 3 T13: 0.0104 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 2.1302 L22: 0.7890 REMARK 3 L33: 1.2660 L12: 0.6992 REMARK 3 L13: 1.2326 L23: 0.4704 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.0502 S13: 0.0872 REMARK 3 S21: 0.0616 S22: 0.0392 S23: 0.1043 REMARK 3 S31: -0.0192 S32: -0.0259 S33: -0.0380 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN K REMARK 3 ORIGIN FOR THE GROUP (A): 4.6282 38.5596 -2.5690 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.3448 REMARK 3 T33: 0.3487 T12: -0.0375 REMARK 3 T13: -0.0226 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 2.6098 L22: 3.9451 REMARK 3 L33: 3.7099 L12: -0.6549 REMARK 3 L13: 0.3570 L23: -1.8928 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.0450 S13: 0.1541 REMARK 3 S21: 0.0861 S22: -0.0596 S23: 0.1140 REMARK 3 S31: -0.1666 S32: -0.0416 S33: 0.0153 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ACI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79409 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 44.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 52.10 REMARK 200 R MERGE (I) : 0.13860 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 44.10 REMARK 200 R MERGE FOR SHELL (I) : 4.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ANI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RESERVOIRS CONTAINED 50-70% MPD, REMARK 280 100 MM HEPES PH 7.0-7.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.79500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.38000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.79500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.38000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, K, L, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 SER A 23 REMARK 465 CYS A 24 REMARK 465 PRO A 25 REMARK 465 GLN A 26 REMARK 465 ASN A 27 REMARK 465 VAL A 28 REMARK 465 ASN A 29 REMARK 465 ILE A 30 REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 GLY A 33 REMARK 465 THR A 34 REMARK 465 PHE A 35 REMARK 465 THR A 36 REMARK 465 LEU A 37 REMARK 465 SER A 38 REMARK 465 HIS A 39 REMARK 465 GLY A 40 REMARK 465 TRP A 41 REMARK 465 ALA A 42 REMARK 465 PRO A 43 REMARK 465 GLY A 44 REMARK 465 SER A 45 REMARK 465 LEU A 46 REMARK 465 LEU A 47 REMARK 465 THR A 48 REMARK 465 TYR A 49 REMARK 465 SER A 50 REMARK 465 ARG A 62 REMARK 465 LEU A 63 REMARK 465 CYS A 64 REMARK 465 LYS A 65 REMARK 465 SER A 66 REMARK 465 SER A 67 REMARK 465 GLY A 68 REMARK 465 GLN A 69 REMARK 465 TRP A 70 REMARK 465 GLN A 71 REMARK 465 THR A 72 REMARK 465 PRO A 73 REMARK 465 GLY A 74 REMARK 465 ALA A 75 REMARK 465 THR A 76 REMARK 465 ARG A 77 REMARK 465 SER A 78 REMARK 465 LEU A 79 REMARK 465 SER A 80 REMARK 465 LYS A 81 REMARK 465 ALA A 82 REMARK 465 TYR A 210 REMARK 465 ASP A 211 REMARK 465 PHE A 212 REMARK 465 PRO A 213 REMARK 465 GLU A 214 REMARK 465 ASP A 215 REMARK 465 VAL A 216 REMARK 465 ALA A 217 REMARK 465 HIS K 128 REMARK 465 HIS K 129 REMARK 465 HIS K 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS K 127 O HOH K 301 2.08 REMARK 500 O2 MPD L 301 O HOH L 401 2.11 REMARK 500 O HOH H 501 O HOH H 508 2.11 REMARK 500 O HOH H 457 O HOH H 500 2.17 REMARK 500 O ARG L 215 O HOH L 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 52 -173.08 -67.58 REMARK 500 SER A 179 -139.88 60.70 REMARK 500 THR H 165 -33.87 -132.36 REMARK 500 ARG K 29 143.40 -177.91 REMARK 500 TYR K 106 30.69 76.16 REMARK 500 ALA L 55 -42.84 75.27 REMARK 500 ASN L 142 61.62 62.76 REMARK 500 GLU L 217 -62.00 68.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 103 O REMARK 620 2 GLU H 99 OE1 86.8 REMARK 620 3 ASP H 103 OD1 88.6 106.8 REMARK 620 4 HOH H 432 O 105.0 87.5 161.0 REMARK 620 5 HOH H 447 O 167.7 105.3 90.1 73.9 REMARK 620 6 TYR L 100 OH 82.6 168.3 77.9 90.5 85.1 REMARK 620 N 1 2 3 4 5 DBREF 8ACI A 21 217 UNP P06681 CO2_HUMAN 21 217 DBREF 8ACI H 1 219 PDB 8ACI 8ACI 1 219 DBREF 8ACI K 3 130 PDB 8ACI 8ACI 3 130 DBREF 8ACI L 1 218 PDB 8ACI 8ACI 1 218 SEQRES 1 A 197 ALA PRO SER CYS PRO GLN ASN VAL ASN ILE SER GLY GLY SEQRES 2 A 197 THR PHE THR LEU SER HIS GLY TRP ALA PRO GLY SER LEU SEQRES 3 A 197 LEU THR TYR SER CYS PRO GLN GLY LEU TYR PRO SER PRO SEQRES 4 A 197 ALA SER ARG LEU CYS LYS SER SER GLY GLN TRP GLN THR SEQRES 5 A 197 PRO GLY ALA THR ARG SER LEU SER LYS ALA VAL CYS LYS SEQRES 6 A 197 PRO VAL ARG CYS PRO ALA PRO VAL SER PHE GLU ASN GLY SEQRES 7 A 197 ILE TYR THR PRO ARG LEU GLY SER TYR PRO VAL GLY GLY SEQRES 8 A 197 ASN VAL SER PHE GLU CYS GLU ASP GLY PHE ILE LEU ARG SEQRES 9 A 197 GLY SER PRO VAL ARG GLN CYS ARG PRO ASN GLY MET TRP SEQRES 10 A 197 ASP GLY GLU THR ALA VAL CYS ASP ASN GLY ALA GLY HIS SEQRES 11 A 197 CYS PRO ASN PRO GLY ILE SER LEU GLY ALA VAL ARG THR SEQRES 12 A 197 GLY PHE ARG PHE GLY HIS GLY ASP LYS VAL ARG TYR ARG SEQRES 13 A 197 CYS SER SER ASN LEU VAL LEU THR GLY SER SER GLU ARG SEQRES 14 A 197 GLU CYS GLN GLY ASN GLY VAL TRP SER GLY THR GLU PRO SEQRES 15 A 197 ILE CYS ARG GLN PRO TYR SER TYR ASP PHE PRO GLU ASP SEQRES 16 A 197 VAL ALA SEQRES 1 H 219 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 219 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 219 TYR THR PHE THR ASP TYR ASN MET ASP TRP VAL ARG GLN SEQRES 4 H 219 ALA THR GLY GLN GLY LEU GLU TRP ILE GLY ASP ILE ASN SEQRES 5 H 219 PRO ASN TYR GLU SER THR GLY TYR ASN GLN LYS PHE LYS SEQRES 6 H 219 GLY ARG ALA THR MET THR VAL ASP LYS SER ILE SER THR SEQRES 7 H 219 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 219 ALA VAL TYR TYR CYS ALA ARG GLU ASP ASP HIS ASP ALA SEQRES 9 H 219 PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 219 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 219 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 219 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 219 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 219 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 219 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 219 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 219 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 1 K 128 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 K 128 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 K 128 ARG THR ILE SER ARG TYR ALA MET SER TRP PHE ARG GLN SEQRES 4 K 128 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA VAL ALA ARG SEQRES 5 K 128 ARG SER GLY ASP GLY ALA PHE TYR ALA ASP SER VAL GLN SEQRES 6 K 128 GLY ARG PHE THR VAL SER ARG ASP ASP ALA LYS ASN THR SEQRES 7 K 128 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 K 128 ALA VAL TYR TYR CYS ALA ILE ASP SER ASP THR PHE TYR SEQRES 9 K 128 SER GLY SER TYR ASP TYR TRP GLY GLN GLY THR GLN VAL SEQRES 10 K 128 THR VAL SER SER GLU HIS HIS HIS HIS HIS HIS SEQRES 1 L 218 ASP ASN VAL LEU THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 218 SER LEU GLY GLU ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 218 LYS SER VAL ARG THR SER GLY TYR ASN TYR MET HIS TRP SEQRES 4 L 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 218 TYR LEU ALA SER ASN LEU LYS SER GLY VAL PRO ASP ARG SEQRES 6 L 218 PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU THR SEQRES 7 L 218 ILE SER SER LEU GLN ALA GLU ASP ALA ALA THR TYR TYR SEQRES 8 L 218 CYS GLN HIS SER ARG GLU LEU PRO TYR THR PHE GLY GLN SEQRES 9 L 218 GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SEQRES 10 L 218 SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SEQRES 11 L 218 SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN SEQRES 13 L 218 ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER THR SEQRES 15 L 218 LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL SEQRES 16 L 218 TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO SEQRES 17 L 218 VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET NAG X 1 14 HET FUC X 2 10 HET CA H 301 1 HET CL K 201 1 HET MPD L 301 8 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG C8 H15 N O6 FORMUL 5 FUC C6 H12 O5 FORMUL 6 CA CA 2+ FORMUL 7 CL CL 1- FORMUL 8 MPD C6 H14 O2 FORMUL 9 HOH *285(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLN H 62 LYS H 65 5 4 HELIX 3 AA3 LYS H 74 ILE H 76 5 3 HELIX 4 AA4 ARG H 87 THR H 91 5 5 HELIX 5 AA5 SER H 132 LYS H 134 5 3 HELIX 6 AA6 SER H 161 ALA H 163 5 3 HELIX 7 AA7 SER H 192 LEU H 194 5 3 HELIX 8 AA8 THR K 30 TYR K 34 5 5 HELIX 9 AA9 LYS K 89 THR K 93 5 5 HELIX 10 AB1 GLN L 83 ALA L 87 5 5 HELIX 11 AB2 SER L 125 SER L 131 1 7 HELIX 12 AB3 LYS L 187 HIS L 193 1 7 SHEET 1 AA1 2 LEU A 55 PRO A 57 0 SHEET 2 AA1 2 CYS A 84 PRO A 86 -1 O LYS A 85 N TYR A 56 SHEET 1 AA2 2 ARG A 88 PRO A 90 0 SHEET 2 AA2 2 SER A 106 PRO A 108 -1 O TYR A 107 N CYS A 89 SHEET 1 AA3 3 GLY A 98 THR A 101 0 SHEET 2 AA3 3 ASN A 112 CYS A 117 -1 O SER A 114 N THR A 101 SHEET 3 AA3 3 VAL A 128 GLN A 130 -1 O ARG A 129 N VAL A 113 SHEET 1 AA4 2 ILE A 122 ARG A 124 0 SHEET 2 AA4 2 VAL A 143 ASP A 145 -1 O ASP A 145 N ILE A 122 SHEET 1 AA5 3 ALA A 160 THR A 163 0 SHEET 2 AA5 3 LYS A 172 CYS A 177 -1 O ARG A 176 N VAL A 161 SHEET 3 AA5 3 GLU A 188 GLU A 190 -1 O ARG A 189 N VAL A 173 SHEET 1 AA6 2 VAL A 182 THR A 184 0 SHEET 2 AA6 2 ILE A 203 ARG A 205 -1 O ARG A 205 N VAL A 182 SHEET 1 AA7 4 GLN H 3 GLN H 6 0 SHEET 2 AA7 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA7 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA7 4 ALA H 68 ASP H 73 -1 N THR H 69 O GLU H 82 SHEET 1 AA8 6 GLU H 10 LYS H 12 0 SHEET 2 AA8 6 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 AA8 6 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA8 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA8 6 LEU H 45 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 AA8 6 THR H 58 TYR H 60 -1 O GLY H 59 N ASP H 50 SHEET 1 AA9 4 GLU H 10 LYS H 12 0 SHEET 2 AA9 4 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 AA9 4 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA9 4 PHE H 105 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 AB1 4 SER H 125 LEU H 129 0 SHEET 2 AB1 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 AB1 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AB1 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 AB2 4 THR H 136 SER H 137 0 SHEET 2 AB2 4 THR H 140 TYR H 150 -1 O THR H 140 N SER H 137 SHEET 3 AB2 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AB2 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 AB3 3 THR H 156 TRP H 159 0 SHEET 2 AB3 3 TYR H 199 HIS H 205 -1 O ASN H 202 N SER H 158 SHEET 3 AB3 3 THR H 210 VAL H 216 -1 O THR H 210 N HIS H 205 SHEET 1 AB4 4 GLN K 5 SER K 9 0 SHEET 2 AB4 4 LEU K 20 SER K 27 -1 O SER K 27 N GLN K 5 SHEET 3 AB4 4 THR K 80 MET K 85 -1 O MET K 85 N LEU K 20 SHEET 4 AB4 4 PHE K 70 ASP K 75 -1 N THR K 71 O GLN K 84 SHEET 1 AB5 6 GLY K 12 VAL K 14 0 SHEET 2 AB5 6 THR K 117 VAL K 121 1 O THR K 120 N GLY K 12 SHEET 3 AB5 6 ALA K 94 ILE K 100 -1 N TYR K 96 O THR K 117 SHEET 4 AB5 6 MET K 36 GLN K 41 -1 N SER K 37 O ALA K 99 SHEET 5 AB5 6 GLU K 48 ALA K 53 -1 O GLU K 48 N ARG K 40 SHEET 6 AB5 6 ALA K 60 TYR K 62 -1 O PHE K 61 N VAL K 52 SHEET 1 AB6 4 GLY K 12 VAL K 14 0 SHEET 2 AB6 4 THR K 117 VAL K 121 1 O THR K 120 N GLY K 12 SHEET 3 AB6 4 ALA K 94 ILE K 100 -1 N TYR K 96 O THR K 117 SHEET 4 AB6 4 TYR K 112 TRP K 113 -1 O TYR K 112 N ILE K 100 SHEET 1 AB7 4 LEU L 4 SER L 7 0 SHEET 2 AB7 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB7 4 ASP L 74 ILE L 79 -1 O LEU L 77 N ILE L 21 SHEET 4 AB7 4 PHE L 66 SER L 71 -1 N SER L 67 O THR L 78 SHEET 1 AB8 6 SER L 10 VAL L 13 0 SHEET 2 AB8 6 THR L 106 ILE L 110 1 O GLU L 109 N LEU L 11 SHEET 3 AB8 6 ALA L 88 HIS L 94 -1 N ALA L 88 O LEU L 108 SHEET 4 AB8 6 MET L 37 GLN L 42 -1 N TYR L 40 O TYR L 91 SHEET 5 AB8 6 LYS L 49 TYR L 53 -1 O LEU L 51 N TRP L 39 SHEET 6 AB8 6 ASN L 57 LEU L 58 -1 O ASN L 57 N TYR L 53 SHEET 1 AB9 4 SER L 10 VAL L 13 0 SHEET 2 AB9 4 THR L 106 ILE L 110 1 O GLU L 109 N LEU L 11 SHEET 3 AB9 4 ALA L 88 HIS L 94 -1 N ALA L 88 O LEU L 108 SHEET 4 AB9 4 THR L 101 PHE L 102 -1 O THR L 101 N HIS L 94 SHEET 1 AC1 2 ARG L 30 THR L 31 0 SHEET 2 AC1 2 TYR L 34 ASN L 35 -1 O TYR L 34 N THR L 31 SHEET 1 AC2 4 SER L 118 PHE L 122 0 SHEET 2 AC2 4 THR L 133 PHE L 143 -1 O LEU L 139 N PHE L 120 SHEET 3 AC2 4 TYR L 177 SER L 186 -1 O LEU L 183 N VAL L 136 SHEET 4 AC2 4 SER L 163 VAL L 167 -1 N GLN L 164 O THR L 182 SHEET 1 AC3 4 ALA L 157 LEU L 158 0 SHEET 2 AC3 4 ALA L 148 VAL L 154 -1 N VAL L 154 O ALA L 157 SHEET 3 AC3 4 VAL L 195 HIS L 202 -1 O GLU L 199 N GLN L 151 SHEET 4 AC3 4 VAL L 209 ASN L 214 -1 O VAL L 209 N VAL L 200 SSBOND 1 CYS A 51 CYS A 84 1555 1555 2.03 SSBOND 2 CYS A 89 CYS A 131 1555 1555 2.05 SSBOND 3 CYS A 117 CYS A 144 1555 1555 2.07 SSBOND 4 CYS A 151 CYS A 191 1555 1555 2.03 SSBOND 5 CYS A 177 CYS A 204 1555 1555 2.04 SSBOND 6 CYS H 22 CYS H 96 1555 1555 2.09 SSBOND 7 CYS H 145 CYS H 201 1555 1555 2.05 SSBOND 8 CYS K 24 CYS K 98 1555 1555 2.05 SSBOND 9 CYS L 23 CYS L 92 1555 1555 2.15 SSBOND 10 CYS L 138 CYS L 198 1555 1555 2.11 LINK ND2 ASN A 112 C1 NAG X 1 1555 1555 1.45 LINK O6 NAG X 1 C1 FUC X 2 1555 1555 1.45 LINK O ARG A 103 CA CA H 301 1555 1555 2.40 LINK OE1 GLU H 99 CA CA H 301 1555 1555 2.23 LINK OD1 ASP H 103 CA CA H 301 1555 1555 2.22 LINK CA CA H 301 O HOH H 432 1555 1555 2.47 LINK CA CA H 301 O HOH H 447 1555 1555 2.36 LINK CA CA H 301 OH TYR L 100 1555 1555 2.66 CISPEP 1 THR A 101 PRO A 102 0 -7.52 CISPEP 2 PHE H 151 PRO H 152 0 -5.60 CISPEP 3 GLU H 153 PRO H 154 0 -1.40 CISPEP 4 SER L 7 PRO L 8 0 -5.43 CISPEP 5 LEU L 98 PRO L 99 0 -3.20 CISPEP 6 TYR L 144 PRO L 145 0 -1.64 CRYST1 71.590 88.760 144.780 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006907 0.00000