HEADER HYDROLASE 12-JUL-22 8AE5 TITLE CRYSTAL STRUCTURE OF HUMAN LEGUMAIN IN COMPLEX WITH MACROCYPIN 1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEGUMAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARAGINYL ENDOPEPTIDASE,PROTEASE,CYSTEINE 1; COMPND 5 EC: 3.4.22.34; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MACROCYPIN-1A; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LGMN, PRSC1; SOURCE 6 EXPRESSION_SYSTEM: LEISHMANIA TARENTOLAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 5689; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MACROLEPIOTA PROCERA; SOURCE 10 ORGANISM_COMMON: PARASOL MUSHROOM; SOURCE 11 ORGANISM_TAXID: 56183; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYSTEINE PROTEASE, LIGASE, ASPARAGINYL ENDOPEPTIDASE, AEP, INHIBITOR, KEYWDS 2 EXOSITE, ACTIVE SITE, SUBSTRATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ELAMIN,H.BRANDSTETTER,E.DALL REVDAT 4 31-JAN-24 8AE5 1 REMARK REVDAT 3 15-NOV-23 8AE5 1 LINK ATOM REVDAT 2 09-NOV-22 8AE5 1 JRNL REVDAT 1 28-SEP-22 8AE5 0 JRNL AUTH T.ELAMIN,N.P.SANTOS,P.BRIZA,H.BRANDSTETTER,E.DALL JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF LEGUMAIN-MYCOCYPIN JRNL TITL 2 COMPLEXES REVEALED A COMPETITIVE, EXOSITE-REGULATED MODE OF JRNL TITL 3 INTERACTION. JRNL REF J.BIOL.CHEM. V. 298 02502 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36116553 JRNL DOI 10.1016/J.JBC.2022.102502 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 70031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 3661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3900 - 6.7800 0.99 2878 2 0.1859 0.4029 REMARK 3 2 6.7800 - 5.3900 1.00 2449 327 0.1910 0.2313 REMARK 3 3 5.3900 - 4.7100 1.00 2745 0 0.1696 0.0000 REMARK 3 4 4.7100 - 4.2800 1.00 2430 327 0.1692 0.1832 REMARK 3 5 4.2800 - 3.9700 1.00 2734 0 0.1849 0.0000 REMARK 3 6 3.9700 - 3.7400 1.00 2400 327 0.2070 0.2477 REMARK 3 7 3.7400 - 3.5500 1.00 2710 0 0.2259 0.0000 REMARK 3 8 3.5500 - 3.3900 1.00 2716 0 0.2464 0.0000 REMARK 3 9 3.3900 - 3.2600 1.00 2390 327 0.2529 0.2887 REMARK 3 10 3.2600 - 3.1500 1.00 2692 0 0.2695 0.0000 REMARK 3 11 3.1500 - 3.0500 1.00 2383 328 0.2616 0.3254 REMARK 3 12 3.0500 - 2.9600 1.00 2677 2 0.2613 0.3067 REMARK 3 13 2.9600 - 2.8900 1.00 2714 0 0.2581 0.0000 REMARK 3 14 2.8900 - 2.8200 1.00 2352 327 0.2704 0.2982 REMARK 3 15 2.8200 - 2.7500 0.99 2687 0 0.2806 0.0000 REMARK 3 16 2.7500 - 2.6900 1.00 2382 324 0.3126 0.3790 REMARK 3 17 2.6900 - 2.6400 1.00 2543 129 0.3213 0.3744 REMARK 3 18 2.6400 - 2.5900 1.00 2555 149 0.3187 0.3762 REMARK 3 19 2.5900 - 2.5400 1.00 2554 133 0.3327 0.4099 REMARK 3 20 2.5400 - 2.5000 0.99 2527 130 0.3471 0.3611 REMARK 3 21 2.5000 - 2.4600 0.99 2526 144 0.3588 0.4183 REMARK 3 22 2.4600 - 2.4200 1.00 2540 151 0.3840 0.3810 REMARK 3 23 2.4200 - 2.3900 1.00 2551 142 0.4151 0.4337 REMARK 3 24 2.3900 - 2.3500 0.99 2491 156 0.4364 0.4496 REMARK 3 25 2.3500 - 2.3200 1.00 2554 135 0.4606 0.5032 REMARK 3 26 2.3200 - 2.2900 0.86 2190 101 0.5270 0.5825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.502 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.469 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7171 REMARK 3 ANGLE : 1.082 9757 REMARK 3 CHIRALITY : 0.068 1019 REMARK 3 PLANARITY : 0.007 1259 REMARK 3 DIHEDRAL : 21.895 2598 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 3.2321 -53.7249 3.4044 REMARK 3 T TENSOR REMARK 3 T11: 0.7298 T22: 0.6043 REMARK 3 T33: 0.8052 T12: -0.0292 REMARK 3 T13: 0.0327 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.0319 L22: -0.1779 REMARK 3 L33: 0.6039 L12: -0.0812 REMARK 3 L13: -0.0360 L23: 0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: -0.0682 S13: 0.6076 REMARK 3 S21: -0.1002 S22: -0.1226 S23: 0.0523 REMARK 3 S31: -0.2771 S32: 0.0305 S33: 0.0242 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 26 through 288 or REMARK 3 resid 310 through 311)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 2 through 16 or REMARK 3 resid 25 through 169)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 2 through 168 or REMARK 3 (resid 169 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG or name REMARK 3 CD or name OE1 or name OE2)))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 47.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.36 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.42 REMARK 200 R MERGE FOR SHELL (I) : 3.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7O50 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 500 MM LICL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.49900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.49900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 79.58900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.06100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 79.58900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.06100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.49900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 79.58900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.06100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.49900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 79.58900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 87.06100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 LEU C 170 REMARK 465 GLU C 171 REMARK 465 HIS C 172 REMARK 465 HIS C 173 REMARK 465 HIS C 174 REMARK 465 HIS C 175 REMARK 465 HIS C 176 REMARK 465 HIS C 177 REMARK 465 MET D 1 REMARK 465 GLN D 17 REMARK 465 HIS D 18 REMARK 465 PRO D 19 REMARK 465 ASN D 20 REMARK 465 SER D 21 REMARK 465 LYS D 22 REMARK 465 ILE D 23 REMARK 465 PRO D 24 REMARK 465 LEU D 170 REMARK 465 GLU D 171 REMARK 465 HIS D 172 REMARK 465 HIS D 173 REMARK 465 HIS D 174 REMARK 465 HIS D 175 REMARK 465 HIS D 176 REMARK 465 HIS D 177 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY B 26 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLY A 26 N CA REMARK 480 LYS A 279 NZ REMARK 480 LYS A 287 CG CD CE NZ REMARK 480 LYS C 22 CB CG CD CE NZ REMARK 480 ILE C 23 CG2 CD1 REMARK 480 VAL B 108 CG1 CG2 REMARK 480 GLN B 111 CB CG CD OE1 NE2 REMARK 480 GLU B 122 CB CG CD OE1 OE2 REMARK 480 ALA B 123 CB REMARK 480 LYS B 125 CB CG CD CE NZ REMARK 480 ILE B 127 CD1 REMARK 480 GLN B 138 CB CG CD OE1 NE2 REMARK 480 LYS B 177 CB CG CD CE NZ REMARK 480 MET B 195 CE REMARK 480 LEU B 198 CB CG CD1 CD2 REMARK 480 ILE B 202 CG1 CG2 CD1 REMARK 480 GLY D 16 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 72 38.26 74.27 REMARK 500 LYS A 134 49.91 -101.19 REMARK 500 PRO A 212 2.51 -66.34 REMARK 500 ASN A 272 91.63 -64.87 REMARK 500 SER C 21 -38.71 65.12 REMARK 500 THR C 40 -155.04 -113.56 REMARK 500 LYS C 49 72.51 -109.63 REMARK 500 ASP C 73 -166.27 -118.72 REMARK 500 TYR C 167 -73.42 -61.70 REMARK 500 ASP B 72 39.95 75.13 REMARK 500 LYS B 134 46.60 -104.33 REMARK 500 ASN B 158 -54.11 -125.34 REMARK 500 PRO B 212 4.44 -66.53 REMARK 500 TYR B 220 65.56 60.31 REMARK 500 ASN B 272 90.10 -64.42 REMARK 500 PHE B 283 -30.71 -135.48 REMARK 500 THR D 40 -158.31 -113.73 REMARK 500 LYS D 49 72.07 -110.06 REMARK 500 ASP D 73 -166.94 -119.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 146 14.72 REMARK 500 THR B 146 17.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 8AE5 A 26 288 UNP Q99538 LGMN_HUMAN 26 288 DBREF 8AE5 C 1 169 UNP B9V973 MCP1A_MACPC 1 169 DBREF 8AE5 B 26 288 UNP Q99538 LGMN_HUMAN 26 288 DBREF 8AE5 D 1 169 UNP B9V973 MCP1A_MACPC 1 169 SEQADV 8AE5 SNN A 147 UNP Q99538 ASP 147 MODIFIED RESIDUE SEQADV 8AE5 LEU C 170 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 GLU C 171 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS C 172 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS C 173 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS C 174 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS C 175 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS C 176 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS C 177 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 SNN B 147 UNP Q99538 ASP 147 MODIFIED RESIDUE SEQADV 8AE5 LEU D 170 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 GLU D 171 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS D 172 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS D 173 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS D 174 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS D 175 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS D 176 UNP B9V973 EXPRESSION TAG SEQADV 8AE5 HIS D 177 UNP B9V973 EXPRESSION TAG SEQRES 1 A 263 GLY GLY LYS HIS TRP VAL VAL ILE VAL ALA GLY SER ASN SEQRES 2 A 263 GLY TRP TYR ASN TYR ARG HIS GLN ALA ASP ALA CYS HIS SEQRES 3 A 263 ALA TYR GLN ILE ILE HIS ARG ASN GLY ILE PRO ASP GLU SEQRES 4 A 263 GLN ILE VAL VAL MET MET TYR ASP ASP ILE ALA TYR SER SEQRES 5 A 263 GLU ASP ASN PRO THR PRO GLY ILE VAL ILE ASN ARG PRO SEQRES 6 A 263 ASN GLY THR ASP VAL TYR GLN GLY VAL PRO LYS ASP TYR SEQRES 7 A 263 THR GLY GLU ASP VAL THR PRO GLN ASN PHE LEU ALA VAL SEQRES 8 A 263 LEU ARG GLY ASP ALA GLU ALA VAL LYS GLY ILE GLY SER SEQRES 9 A 263 GLY LYS VAL LEU LYS SER GLY PRO GLN ASP HIS VAL PHE SEQRES 10 A 263 ILE TYR PHE THR SNN HIS GLY SER THR GLY ILE LEU VAL SEQRES 11 A 263 PHE PRO ASN GLU ASP LEU HIS VAL LYS ASP LEU ASN GLU SEQRES 12 A 263 THR ILE HIS TYR MET TYR LYS HIS LYS MET TYR ARG LYS SEQRES 13 A 263 MET VAL PHE TYR ILE GLU ALA SCH GLU SER GLY SER MET SEQRES 14 A 263 MET ASN HIS LEU PRO ASP ASN ILE ASN VAL TYR ALA THR SEQRES 15 A 263 THR ALA ALA ASN PRO ARG GLU SER SER TYR ALA CYS TYR SEQRES 16 A 263 TYR ASP GLU LYS ARG SER THR TYR LEU GLY ASP TRP TYR SEQRES 17 A 263 SER VAL ASN TRP MET GLU ASP SER ASP VAL GLU ASP LEU SEQRES 18 A 263 THR LYS GLU THR LEU HIS LYS GLN TYR HIS LEU VAL LYS SEQRES 19 A 263 SER HIS THR ASN THR SER HIS VAL MET GLN TYR GLY ASN SEQRES 20 A 263 LYS THR ILE SER THR MET LYS VAL MET GLN PHE GLN GLY SEQRES 21 A 263 MET LYS ARG SEQRES 1 C 177 MET GLY PHE GLU ASP GLY PHE TYR THR ILE LEU HIS LEU SEQRES 2 C 177 ALA GLU GLY GLN HIS PRO ASN SER LYS ILE PRO GLY GLY SEQRES 3 C 177 MET TYR ALA SER SER LYS ASP GLY LYS ASP VAL PRO VAL SEQRES 4 C 177 THR ALA GLU PRO LEU GLY PRO GLN SER LYS ILE ARG TRP SEQRES 5 C 177 TRP ILE ALA ARG ASP PRO GLN ALA GLY ASP ASP MET TYR SEQRES 6 C 177 THR ILE THR GLU PHE ARG ILE ASP ASN SER ILE PRO GLY SEQRES 7 C 177 GLN TRP SER ARG SER PRO VAL GLU THR GLU VAL PRO VAL SEQRES 8 C 177 TYR LEU TYR ASP ARG ILE LYS ALA GLU GLU THR GLY TYR SEQRES 9 C 177 THR CYS ALA TRP ARG ILE GLN PRO ALA ASP HIS GLY ALA SEQRES 10 C 177 ASP GLY VAL TYR HIS ILE VAL GLY ASN VAL ARG ILE GLY SEQRES 11 C 177 SER THR ASP TRP ALA ASP LEU ARG GLU GLU TYR GLY GLU SEQRES 12 C 177 PRO GLN VAL TYR MET LYS PRO VAL PRO VAL ILE PRO ASN SEQRES 13 C 177 VAL TYR ILE PRO ARG TRP PHE ILE LEU GLY TYR GLU GLU SEQRES 14 C 177 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 263 GLY GLY LYS HIS TRP VAL VAL ILE VAL ALA GLY SER ASN SEQRES 2 B 263 GLY TRP TYR ASN TYR ARG HIS GLN ALA ASP ALA CYS HIS SEQRES 3 B 263 ALA TYR GLN ILE ILE HIS ARG ASN GLY ILE PRO ASP GLU SEQRES 4 B 263 GLN ILE VAL VAL MET MET TYR ASP ASP ILE ALA TYR SER SEQRES 5 B 263 GLU ASP ASN PRO THR PRO GLY ILE VAL ILE ASN ARG PRO SEQRES 6 B 263 ASN GLY THR ASP VAL TYR GLN GLY VAL PRO LYS ASP TYR SEQRES 7 B 263 THR GLY GLU ASP VAL THR PRO GLN ASN PHE LEU ALA VAL SEQRES 8 B 263 LEU ARG GLY ASP ALA GLU ALA VAL LYS GLY ILE GLY SER SEQRES 9 B 263 GLY LYS VAL LEU LYS SER GLY PRO GLN ASP HIS VAL PHE SEQRES 10 B 263 ILE TYR PHE THR SNN HIS GLY SER THR GLY ILE LEU VAL SEQRES 11 B 263 PHE PRO ASN GLU ASP LEU HIS VAL LYS ASP LEU ASN GLU SEQRES 12 B 263 THR ILE HIS TYR MET TYR LYS HIS LYS MET TYR ARG LYS SEQRES 13 B 263 MET VAL PHE TYR ILE GLU ALA SCH GLU SER GLY SER MET SEQRES 14 B 263 MET ASN HIS LEU PRO ASP ASN ILE ASN VAL TYR ALA THR SEQRES 15 B 263 THR ALA ALA ASN PRO ARG GLU SER SER TYR ALA CYS TYR SEQRES 16 B 263 TYR ASP GLU LYS ARG SER THR TYR LEU GLY ASP TRP TYR SEQRES 17 B 263 SER VAL ASN TRP MET GLU ASP SER ASP VAL GLU ASP LEU SEQRES 18 B 263 THR LYS GLU THR LEU HIS LYS GLN TYR HIS LEU VAL LYS SEQRES 19 B 263 SER HIS THR ASN THR SER HIS VAL MET GLN TYR GLY ASN SEQRES 20 B 263 LYS THR ILE SER THR MET LYS VAL MET GLN PHE GLN GLY SEQRES 21 B 263 MET LYS ARG SEQRES 1 D 177 MET GLY PHE GLU ASP GLY PHE TYR THR ILE LEU HIS LEU SEQRES 2 D 177 ALA GLU GLY GLN HIS PRO ASN SER LYS ILE PRO GLY GLY SEQRES 3 D 177 MET TYR ALA SER SER LYS ASP GLY LYS ASP VAL PRO VAL SEQRES 4 D 177 THR ALA GLU PRO LEU GLY PRO GLN SER LYS ILE ARG TRP SEQRES 5 D 177 TRP ILE ALA ARG ASP PRO GLN ALA GLY ASP ASP MET TYR SEQRES 6 D 177 THR ILE THR GLU PHE ARG ILE ASP ASN SER ILE PRO GLY SEQRES 7 D 177 GLN TRP SER ARG SER PRO VAL GLU THR GLU VAL PRO VAL SEQRES 8 D 177 TYR LEU TYR ASP ARG ILE LYS ALA GLU GLU THR GLY TYR SEQRES 9 D 177 THR CYS ALA TRP ARG ILE GLN PRO ALA ASP HIS GLY ALA SEQRES 10 D 177 ASP GLY VAL TYR HIS ILE VAL GLY ASN VAL ARG ILE GLY SEQRES 11 D 177 SER THR ASP TRP ALA ASP LEU ARG GLU GLU TYR GLY GLU SEQRES 12 D 177 PRO GLN VAL TYR MET LYS PRO VAL PRO VAL ILE PRO ASN SEQRES 13 D 177 VAL TYR ILE PRO ARG TRP PHE ILE LEU GLY TYR GLU GLU SEQRES 14 D 177 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 8AE5 SCH A 189 CYS MODIFIED RESIDUE MODRES 8AE5 SCH B 189 CYS MODIFIED RESIDUE HET SNN A 147 8 HET SCH A 189 8 HET SNN B 147 8 HET SCH B 189 8 HET NAG E 1 14 HET NAG E 2 14 HET NAG A 301 14 HET NAG A 302 14 HET SO4 A 303 5 HET SO4 C 201 5 HET NAG B 301 14 HET NAG B 302 14 HET SO4 B 303 5 HET SO4 D 201 5 HET SO4 D 202 5 HETNAM SNN L-3-AMINOSUCCINIMIDE HETNAM SCH S-METHYL-THIO-CYSTEINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 SNN 2(C4 H6 N2 O2) FORMUL 1 SCH 2(C4 H9 N O2 S2) FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 8 SO4 5(O4 S 2-) FORMUL 15 HOH *80(H2 O) HELIX 1 AA1 GLY A 39 TYR A 41 5 3 HELIX 2 AA2 ASN A 42 ASN A 59 1 18 HELIX 3 AA3 PRO A 62 GLU A 64 5 3 HELIX 4 AA4 THR A 104 VAL A 108 5 5 HELIX 5 AA5 THR A 109 GLY A 119 1 11 HELIX 6 AA6 ALA A 121 LYS A 125 5 5 HELIX 7 AA7 VAL A 163 HIS A 176 1 14 HELIX 8 AA8 GLU A 190 MET A 195 5 6 HELIX 9 AA9 TRP A 232 ASP A 242 1 11 HELIX 10 AB1 THR A 250 THR A 262 1 13 HELIX 11 AB2 LYS A 273 LYS A 279 5 7 HELIX 12 AB3 VAL A 280 GLY A 285 1 6 HELIX 13 AB4 PRO C 58 GLY C 61 5 4 HELIX 14 AB5 ASP C 95 GLY C 103 1 9 HELIX 15 AB6 GLY B 39 TYR B 41 5 3 HELIX 16 AB7 ASN B 42 ASN B 59 1 18 HELIX 17 AB8 PRO B 62 GLU B 64 5 3 HELIX 18 AB9 THR B 104 VAL B 108 5 5 HELIX 19 AC1 THR B 109 GLY B 119 1 11 HELIX 20 AC2 ALA B 121 LYS B 125 5 5 HELIX 21 AC3 VAL B 163 HIS B 176 1 14 HELIX 22 AC4 GLU B 190 MET B 195 5 6 HELIX 23 AC5 TRP B 232 GLU B 244 1 13 HELIX 24 AC6 THR B 250 THR B 262 1 13 HELIX 25 AC7 LYS B 273 LYS B 279 5 7 HELIX 26 AC8 VAL B 280 GLY B 285 1 6 HELIX 27 AC9 ASP D 95 GLY D 103 1 9 SHEET 1 AA1 6 ILE A 66 MET A 69 0 SHEET 2 AA1 6 HIS A 29 ALA A 35 1 N ALA A 35 O MET A 69 SHEET 3 AA1 6 HIS A 140 THR A 146 1 O HIS A 140 N TRP A 30 SHEET 4 AA1 6 LYS A 181 ILE A 186 1 O VAL A 183 N ILE A 143 SHEET 5 AA1 6 VAL A 204 THR A 208 1 O THR A 207 N PHE A 184 SHEET 6 AA1 6 MET A 268 GLY A 271 -1 O TYR A 270 N ALA A 206 SHEET 1 AA2 3 GLY A 149 SER A 150 0 SHEET 2 AA2 3 ILE A 153 VAL A 155 -1 O ILE A 153 N SER A 150 SHEET 3 AA2 3 ASP A 160 HIS A 162 -1 O LEU A 161 N LEU A 154 SHEET 1 AA3 2 ALA A 218 ASP A 222 0 SHEET 2 AA3 2 THR A 227 ASP A 231 -1 O THR A 227 N ASP A 222 SHEET 1 AA4 9 THR C 40 GLU C 42 0 SHEET 2 AA4 9 MET C 27 SER C 30 -1 N TYR C 28 O GLU C 42 SHEET 3 AA4 9 GLY C 6 LEU C 13 -1 N HIS C 12 O MET C 27 SHEET 4 AA4 9 TRP C 52 ARG C 56 -1 O TRP C 52 N TYR C 8 SHEET 5 AA4 9 MET C 64 GLU C 69 -1 O THR C 68 N TRP C 53 SHEET 6 AA4 9 TRP C 108 PRO C 112 -1 O TRP C 108 N TYR C 65 SHEET 7 AA4 9 VAL C 120 VAL C 127 -1 O HIS C 122 N GLN C 111 SHEET 8 AA4 9 THR C 132 GLU C 140 -1 O ALA C 135 N ILE C 123 SHEET 9 AA4 9 GLU C 143 VAL C 151 -1 O LYS C 149 N TRP C 134 SHEET 1 AA5 7 THR C 40 GLU C 42 0 SHEET 2 AA5 7 MET C 27 SER C 30 -1 N TYR C 28 O GLU C 42 SHEET 3 AA5 7 GLY C 6 LEU C 13 -1 N HIS C 12 O MET C 27 SHEET 4 AA5 7 ARG C 161 GLY C 166 -1 O LEU C 165 N THR C 9 SHEET 5 AA5 7 VAL C 120 VAL C 127 -1 N TYR C 121 O TRP C 162 SHEET 6 AA5 7 THR C 132 GLU C 140 -1 O ALA C 135 N ILE C 123 SHEET 7 AA5 7 GLU C 143 VAL C 151 -1 O LYS C 149 N TRP C 134 SHEET 1 AA6 2 GLN C 79 SER C 81 0 SHEET 2 AA6 2 TYR C 92 TYR C 94 -1 O TYR C 92 N SER C 81 SHEET 1 AA7 6 ILE B 66 MET B 69 0 SHEET 2 AA7 6 HIS B 29 ALA B 35 1 N ILE B 33 O MET B 69 SHEET 3 AA7 6 HIS B 140 THR B 146 1 O HIS B 140 N TRP B 30 SHEET 4 AA7 6 LYS B 181 ILE B 186 1 O TYR B 185 N ILE B 143 SHEET 5 AA7 6 VAL B 204 THR B 208 1 O TYR B 205 N MET B 182 SHEET 6 AA7 6 MET B 268 GLY B 271 -1 O TYR B 270 N ALA B 206 SHEET 1 AA8 3 GLY B 149 SER B 150 0 SHEET 2 AA8 3 ILE B 153 VAL B 155 -1 O ILE B 153 N SER B 150 SHEET 3 AA8 3 ASP B 160 HIS B 162 -1 O LEU B 161 N LEU B 154 SHEET 1 AA9 2 ALA B 218 ASP B 222 0 SHEET 2 AA9 2 THR B 227 ASP B 231 -1 O LEU B 229 N TYR B 220 SHEET 1 AB1 9 THR D 40 GLU D 42 0 SHEET 2 AB1 9 MET D 27 SER D 30 -1 N TYR D 28 O GLU D 42 SHEET 3 AB1 9 GLY D 6 LEU D 13 -1 N HIS D 12 O MET D 27 SHEET 4 AB1 9 ARG D 51 ARG D 56 -1 O TRP D 52 N TYR D 8 SHEET 5 AB1 9 MET D 64 GLU D 69 -1 O THR D 68 N TRP D 53 SHEET 6 AB1 9 TRP D 108 PRO D 112 -1 O TRP D 108 N TYR D 65 SHEET 7 AB1 9 VAL D 120 VAL D 127 -1 O VAL D 124 N ARG D 109 SHEET 8 AB1 9 SER D 131 GLU D 140 -1 O ASP D 133 N ASN D 126 SHEET 9 AB1 9 GLU D 143 PRO D 152 -1 O GLU D 143 N GLU D 140 SHEET 1 AB2 7 THR D 40 GLU D 42 0 SHEET 2 AB2 7 MET D 27 SER D 30 -1 N TYR D 28 O GLU D 42 SHEET 3 AB2 7 GLY D 6 LEU D 13 -1 N HIS D 12 O MET D 27 SHEET 4 AB2 7 ARG D 161 GLY D 166 -1 O PHE D 163 N LEU D 11 SHEET 5 AB2 7 VAL D 120 VAL D 127 -1 N TYR D 121 O TRP D 162 SHEET 6 AB2 7 SER D 131 GLU D 140 -1 O ASP D 133 N ASN D 126 SHEET 7 AB2 7 GLU D 143 PRO D 152 -1 O GLU D 143 N GLU D 140 SHEET 1 AB3 3 VAL D 37 PRO D 38 0 SHEET 2 AB3 3 TYR D 92 TYR D 94 -1 O LEU D 93 N VAL D 37 SHEET 3 AB3 3 GLN D 79 SER D 81 -1 N GLN D 79 O TYR D 94 LINK ND2 ASN A 91 C1 NAG A 302 1555 1555 1.44 LINK C THR A 146 N SNN A 147 1555 1555 1.35 LINK N1 SNN A 147 CA HIS A 148 1555 1555 1.47 LINK C ALA A 188 N SCH A 189 1555 1555 1.33 LINK C SCH A 189 N GLU A 190 1555 1555 1.33 LINK ND2 ASN A 272 C1 NAG A 301 1555 1555 1.51 LINK ND2 ASN B 91 C1 NAG B 302 1555 1555 1.45 LINK C THR B 146 N SNN B 147 1555 1555 1.34 LINK N1 SNN B 147 CA HIS B 148 1555 1555 1.45 LINK ND2 ASN B 167 C1 NAG B 301 1555 1555 1.45 LINK C ALA B 188 N SCH B 189 1555 1555 1.33 LINK C SCH B 189 N GLU B 190 1555 1555 1.33 LINK ND2 ASN B 272 C1 NAG E 1 1555 1555 1.47 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.47 CRYST1 159.178 174.122 112.998 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008850 0.00000 MTRIX1 1 -0.874205 0.084378 -0.478168 9.35596 1 MTRIX2 1 -0.130319 0.907880 0.398460 -1.40003 1 MTRIX3 1 0.467741 0.410651 -0.782678 37.86646 1 MTRIX1 2 -0.926378 0.084088 -0.367087 9.28705 1 MTRIX2 2 -0.076483 0.912431 0.402020 -0.37628 1 MTRIX3 2 0.368746 0.400498 -0.838825 36.47523 1