HEADER DE NOVO PROTEIN 13-JUL-22 8AED TITLE BROADLY NEUTRALIZING DARPIN BND.9 IN COMPLEX WITH THE HIV-1 ENVELOPE TITLE 2 VARIABLE LOOP 3 PEPTIDE V3 (BG505) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROADLY NEUTRALIZING DARPIN BND.9; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 7 CHAIN: C, D; COMPND 8 SYNONYM: ENV POLYPROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 9 ORGANISM_TAXID: 11676 KEYWDS DARPIN, HIV, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.MITTL,M.GLOEGL REVDAT 4 20-SEP-23 8AED 1 JRNL REVDAT 3 30-AUG-23 8AED 1 JRNL REVDAT 2 23-AUG-23 8AED 1 JRNL REVDAT 1 16-AUG-23 8AED 0 JRNL AUTH M.GLOGL,N.FRIEDRICH,G.CERUTTI,T.LEMMIN,Y.D.KWON,J.GORMAN, JRNL AUTH 2 L.MALIQI,P.R.E.MITTL,M.C.HESSELMAN,D.SCHMIDT,J.WEBER, JRNL AUTH 3 C.FOULKES,A.S.DINGENS,T.BYLUND,A.S.OLIA,R.VERARDI, JRNL AUTH 4 T.REINBERG,N.S.BAUMANN,P.RUSERT,B.DREIER,L.SHAPIRO, JRNL AUTH 5 P.D.KWONG,A.PLUCKTHUN,A.TRKOLA JRNL TITL TRAPPING THE HIV-1 V3 LOOP IN A HELICAL CONFORMATION ENABLES JRNL TITL 2 BROAD NEUTRALIZATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 30 1323 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 37605043 JRNL DOI 10.1038/S41594-023-01062-Z REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.1 REMARK 3 NUMBER OF REFLECTIONS : 79966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.2300 - 3.5800 0.99 3615 190 0.1702 0.2010 REMARK 3 2 3.5800 - 2.8500 0.99 3540 186 0.1532 0.1581 REMARK 3 3 2.8400 - 2.4900 0.99 3529 185 0.1471 0.1742 REMARK 3 4 2.4900 - 2.2600 0.98 3502 182 0.1431 0.1698 REMARK 3 5 2.2600 - 2.1000 0.98 3477 182 0.1411 0.1569 REMARK 3 6 2.1000 - 1.9700 0.98 3471 181 0.1365 0.1677 REMARK 3 7 1.9700 - 1.8700 0.98 3431 181 0.1455 0.1966 REMARK 3 8 1.8700 - 1.7900 0.97 3470 180 0.1504 0.1815 REMARK 3 9 1.7900 - 1.7200 0.97 3432 182 0.1438 0.1989 REMARK 3 10 1.7200 - 1.6600 0.97 3392 179 0.1457 0.1755 REMARK 3 11 1.6600 - 1.6100 0.96 3427 181 0.1480 0.1667 REMARK 3 12 1.6100 - 1.5700 0.96 3389 178 0.1422 0.1848 REMARK 3 13 1.5700 - 1.5200 0.96 3381 178 0.1433 0.1699 REMARK 3 14 1.5200 - 1.4900 0.96 3384 178 0.1465 0.1742 REMARK 3 15 1.4900 - 1.4500 0.96 3337 176 0.1509 0.1780 REMARK 3 16 1.4500 - 1.4200 0.95 3369 178 0.1637 0.1913 REMARK 3 17 1.4200 - 1.3900 0.91 3193 172 0.1634 0.2197 REMARK 3 18 1.3900 - 1.3700 0.83 2923 153 0.1671 0.2372 REMARK 3 19 1.3700 - 1.3400 0.76 2645 140 0.1721 0.2139 REMARK 3 20 1.3400 - 1.3200 0.68 2411 122 0.1770 0.2164 REMARK 3 21 1.3200 - 1.3000 0.61 2139 109 0.1877 0.2492 REMARK 3 22 1.3000 - 1.2800 0.47 1670 90 0.1957 0.2761 REMARK 3 23 1.2800 - 1.2600 0.39 1365 74 0.1999 0.2836 REMARK 3 24 1.2600 - 1.2400 0.32 1112 64 0.2067 0.2422 REMARK 3 25 1.2400 - 1.2300 0.27 932 50 0.2047 0.2726 REMARK 3 26 1.2300 - 1.2100 0.22 787 36 0.2165 0.3312 REMARK 3 27 1.2100 - 1.1900 0.18 649 34 0.2197 0.2356 REMARK 3 28 1.1900 - 1.1800 0.16 548 25 0.2225 0.3058 REMARK 3 29 1.1800 - 1.1700 0.13 453 27 0.2553 0.2761 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292121586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79970 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 57.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QYJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRISODIUM CITRATE, PH 4.31 165 REMARK 280 MM MAGNESIUM ACETATE 20% PEG SMEAR BROAD (PSB), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.61650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 ASN C 306 REMARK 465 THR C 307 REMARK 465 ARG C 308 REMARK 465 LYS C 309 REMARK 465 ASN D 306 REMARK 465 THR D 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 82 O HOH A 302 1.51 REMARK 500 MG MG A 205 HO7 CIT A 206 1.54 REMARK 500 HD1 HIS B 49 O HOH B 304 1.56 REMARK 500 O HOH B 400 O HOH B 461 1.73 REMARK 500 O HOH A 301 O HOH A 438 1.83 REMARK 500 O HOH D 401 O HOH D 414 1.83 REMARK 500 O HOH B 371 O HOH B 409 1.84 REMARK 500 O HOH B 424 O HOH B 447 1.85 REMARK 500 O HOH A 413 O HOH B 310 1.87 REMARK 500 O HOH B 407 O HOH B 476 1.91 REMARK 500 OD1 ASP C 324 O HOH C 501 1.92 REMARK 500 O HOH A 324 O HOH A 422 1.92 REMARK 500 O HOH A 455 O HOH A 514 1.93 REMARK 500 O HOH A 372 O HOH A 481 1.94 REMARK 500 O HOH A 302 O HOH A 453 1.94 REMARK 500 O HOH B 404 O HOH B 443 1.95 REMARK 500 O HOH A 438 O HOH A 499 1.95 REMARK 500 O HOH C 519 O HOH C 528 1.97 REMARK 500 O HOH B 316 O HOH B 441 1.97 REMARK 500 OD1 ASP C 324 O HOH C 502 1.98 REMARK 500 O HOH D 409 O HOH D 414 1.98 REMARK 500 O HOH A 456 O HOH A 464 1.98 REMARK 500 O HOH A 467 O HOH A 510 2.00 REMARK 500 O HOH B 450 O HOH B 500 2.00 REMARK 500 O HOH A 486 O HOH A 530 2.00 REMARK 500 O HOH A 525 O HOH A 536 2.01 REMARK 500 O HOH A 447 O HOH A 523 2.01 REMARK 500 O HOH A 381 O HOH A 525 2.01 REMARK 500 O HOH C 502 O HOH C 504 2.02 REMARK 500 O HOH A 421 O HOH A 473 2.02 REMARK 500 O HOH A 379 O HOH A 515 2.03 REMARK 500 O HOH A 361 O HOH A 509 2.04 REMARK 500 O HOH A 350 O HOH A 493 2.05 REMARK 500 O HOH A 369 O HOH A 510 2.05 REMARK 500 OD1 ASP A 3 O HOH A 301 2.08 REMARK 500 OXT ILE D 329 O HOH D 401 2.08 REMARK 500 O HOH C 502 O HOH D 422 2.08 REMARK 500 O HOH B 314 O HOH B 346 2.08 REMARK 500 O HOH B 311 O HOH B 458 2.09 REMARK 500 O HOH A 307 O HOH A 463 2.09 REMARK 500 O HOH A 457 O HOH A 496 2.10 REMARK 500 O HOH A 474 O HOH A 491 2.10 REMARK 500 O HOH C 502 O HOH D 414 2.12 REMARK 500 O HOH A 422 O HOH A 499 2.13 REMARK 500 O HOH A 301 O HOH A 499 2.13 REMARK 500 O HOH A 513 O HOH A 537 2.15 REMARK 500 O HOH A 493 O HOH D 425 2.16 REMARK 500 O HOH B 337 O HOH B 487 2.16 REMARK 500 OE2 GLU B 10 O HOH B 301 2.17 REMARK 500 O HOH A 498 O HOH A 516 2.17 REMARK 500 REMARK 500 THIS ENTRY HAS 52 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 460 O HOH B 321 2456 1.99 REMARK 500 O HOH A 445 O HOH B 307 2456 2.00 REMARK 500 OXT ASN A 162 NZ LYS B 124 2456 2.02 REMARK 500 O HOH A 419 O HOH C 522 2445 2.14 REMARK 500 O HOH A 460 O HOH B 456 2456 2.18 REMARK 500 O HOH A 386 O HOH B 411 1655 2.18 REMARK 500 O HOH A 451 O HOH B 449 2456 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 117 OE2 REMARK 620 2 CIT A 206 O4 88.7 REMARK 620 3 CIT A 206 O7 170.7 82.1 REMARK 620 4 CIT A 206 O6 105.4 91.9 74.7 REMARK 620 5 HOH A 395 O 89.0 87.3 90.9 165.5 REMARK 620 6 HOH B 324 O 91.0 177.5 98.2 85.8 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 353 O REMARK 620 2 GLU B 117 OE1 89.4 REMARK 620 3 CIT B 204 O6 90.3 105.9 REMARK 620 4 CIT B 204 O7 101.3 169.2 75.3 REMARK 620 5 CIT B 204 O4 177.0 87.6 90.0 81.7 REMARK 620 6 HOH B 398 O 90.8 90.5 163.6 88.5 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 328 OD1 REMARK 620 2 HOH C 505 O 90.2 REMARK 620 3 HOH C 507 O 90.8 89.6 REMARK 620 4 ASP D 328 OD1 174.0 86.9 94.4 REMARK 620 5 HOH D 404 O 94.5 171.8 97.1 87.8 REMARK 620 6 HOH D 405 O 87.4 87.5 176.5 87.2 86.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7Z7C RELATED DB: PDB DBREF 8AED A 1 162 PDB 8AED 8AED 1 162 DBREF 8AED B 1 162 PDB 8AED 8AED 1 162 DBREF 8AED C 306 329 UNP Q9Q714 ENV_HV1V9 306 329 DBREF 8AED D 306 329 UNP Q9Q714 ENV_HV1V9 306 329 SEQRES 1 A 162 GLY SER ASP LEU GLY LYS LYS LEU LEU GLU ALA ALA TYR SEQRES 2 A 162 TYR GLY GLN LEU ASP GLU VAL ARG ILE LEU MET ALA ASN SEQRES 3 A 162 GLY ALA ASP VAL ASN ALA VAL ASP VAL HIS GLY ILE THR SEQRES 4 A 162 PRO LEU HIS LEU ALA ALA TYR PHE GLY HIS LEU GLU ILE SEQRES 5 A 162 VAL GLU VAL LEU LEU LYS THR GLY ALA ASP VAL ASN ALA SEQRES 6 A 162 ARG ASP ASN ARG GLY ILE THR PRO LEU HIS LEU ALA ALA SEQRES 7 A 162 ALA MET GLY HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS SEQRES 8 A 162 ALA GLY ALA ASP VAL ASN ALA PHE ASP GLU ALA GLY ASP SEQRES 9 A 162 THR PRO LEU HIS LEU ALA ALA LEU LYS GLY HIS LEU GLU SEQRES 10 A 162 ILE VAL GLU VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN SEQRES 11 A 162 ALA GLN ASP LYS PHE GLY LYS THR ALA PHE ASP ILE SER SEQRES 12 A 162 ILE ASP ASN GLY ASN GLU ASP ILE ALA GLU VAL LEU GLN SEQRES 13 A 162 LYS ALA ALA LYS LEU ASN SEQRES 1 B 162 GLY SER ASP LEU GLY LYS LYS LEU LEU GLU ALA ALA TYR SEQRES 2 B 162 TYR GLY GLN LEU ASP GLU VAL ARG ILE LEU MET ALA ASN SEQRES 3 B 162 GLY ALA ASP VAL ASN ALA VAL ASP VAL HIS GLY ILE THR SEQRES 4 B 162 PRO LEU HIS LEU ALA ALA TYR PHE GLY HIS LEU GLU ILE SEQRES 5 B 162 VAL GLU VAL LEU LEU LYS THR GLY ALA ASP VAL ASN ALA SEQRES 6 B 162 ARG ASP ASN ARG GLY ILE THR PRO LEU HIS LEU ALA ALA SEQRES 7 B 162 ALA MET GLY HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS SEQRES 8 B 162 ALA GLY ALA ASP VAL ASN ALA PHE ASP GLU ALA GLY ASP SEQRES 9 B 162 THR PRO LEU HIS LEU ALA ALA LEU LYS GLY HIS LEU GLU SEQRES 10 B 162 ILE VAL GLU VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN SEQRES 11 B 162 ALA GLN ASP LYS PHE GLY LYS THR ALA PHE ASP ILE SER SEQRES 12 B 162 ILE ASP ASN GLY ASN GLU ASP ILE ALA GLU VAL LEU GLN SEQRES 13 B 162 LYS ALA ALA LYS LEU ASN SEQRES 1 C 24 ASN THR ARG LYS SER ILE ARG ILE GLY PRO GLY GLN ALA SEQRES 2 C 24 PHE TYR ALA THR GLY ASP ILE ILE GLY ASP ILE SEQRES 1 D 24 ASN THR ARG LYS SER ILE ARG ILE GLY PRO GLY GLN ALA SEQRES 2 D 24 PHE TYR ALA THR GLY ASP ILE ILE GLY ASP ILE HET EDO A 201 10 HET EDO A 202 10 HET ACT A 203 7 HET ACT A 204 7 HET MG A 205 1 HET CIT A 206 18 HET EDO B 201 10 HET EDO B 202 10 HET MG B 203 1 HET CIT B 204 18 HET MG C 401 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION HETNAM CIT CITRIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 4(C2 H6 O2) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 9 MG 3(MG 2+) FORMUL 10 CIT 2(C6 H8 O7) FORMUL 16 HOH *493(H2 O) HELIX 1 AA1 ASP A 3 TYR A 14 1 12 HELIX 2 AA2 GLN A 16 ASN A 26 1 11 HELIX 3 AA3 THR A 39 GLY A 48 1 10 HELIX 4 AA4 HIS A 49 THR A 59 1 11 HELIX 5 AA5 THR A 72 GLY A 81 1 10 HELIX 6 AA6 HIS A 82 ALA A 92 1 11 HELIX 7 AA7 THR A 105 LYS A 113 1 9 HELIX 8 AA8 HIS A 115 HIS A 125 1 11 HELIX 9 AA9 THR A 138 GLY A 147 1 10 HELIX 10 AB1 ASN A 148 ASN A 162 1 15 HELIX 11 AB2 LEU B 4 TYR B 14 1 11 HELIX 12 AB3 GLN B 16 ASN B 26 1 11 HELIX 13 AB4 THR B 39 PHE B 47 1 9 HELIX 14 AB5 HIS B 49 THR B 59 1 11 HELIX 15 AB6 THR B 72 MET B 80 1 9 HELIX 16 AB7 HIS B 82 ALA B 92 1 11 HELIX 17 AB8 THR B 105 LYS B 113 1 9 HELIX 18 AB9 HIS B 115 HIS B 125 1 11 HELIX 19 AC1 THR B 138 ASN B 146 1 9 HELIX 20 AC2 ASN B 148 ASN B 162 1 15 HELIX 21 AC3 GLY C 316 ASP C 328 1 13 HELIX 22 AC4 ILE C 329 ILE C 329 5 1 HELIX 23 AC5 ARG D 308 ARG D 312 5 5 HELIX 24 AC6 GLY D 316 GLY D 327 1 12 LINK OE2 GLU A 117 MG MG A 205 1555 1555 1.96 LINK MG MG A 205 O4 CIT A 206 1555 1555 2.05 LINK MG MG A 205 O7 CIT A 206 1555 1555 2.14 LINK MG MG A 205 O6 CIT A 206 1555 1555 2.16 LINK MG MG A 205 O HOH A 395 1555 1555 2.06 LINK MG MG A 205 O HOH B 324 1555 1555 2.02 LINK O HOH A 353 MG MG B 203 1555 1555 2.05 LINK OE1 GLU B 117 MG MG B 203 1555 1555 2.01 LINK MG MG B 203 O6 CIT B 204 1555 1555 2.17 LINK MG MG B 203 O7 CIT B 204 1555 1555 2.10 LINK MG MG B 203 O4 CIT B 204 1555 1555 2.06 LINK MG MG B 203 O HOH B 398 1555 1555 2.06 LINK OD1 ASP C 328 MG MG C 401 1555 1555 1.98 LINK MG MG C 401 O HOH C 505 1555 1555 2.03 LINK MG MG C 401 O HOH C 507 1555 1555 2.04 LINK MG MG C 401 OD1 ASP D 328 1555 1555 2.04 LINK MG MG C 401 O HOH D 404 1555 1555 2.15 LINK MG MG C 401 O HOH D 405 1555 1555 2.13 CRYST1 50.795 55.233 58.032 90.00 98.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019687 0.000000 0.002957 0.00000 SCALE2 0.000000 0.018105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017425 0.00000