HEADER CELL CYCLE 20-JUL-22 8AGR TITLE CRYSTAL STRUCTURE OF DLTE FROM L. PLANTARUM, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CLASS A BETA-LACTAMASE-RELATED SERINE HYDROLASE,PENICILLIN- COMPND 5 BINDING PROTEIN PBPX,SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE; COMPND 6 EC: 3.4.16.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTIPLANTIBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 1590; SOURCE 4 GENE: PBPX2, PBPX_4, C7M36_02596, E3O64_07015, E3U93_06380, SOURCE 5 FEE41_04205, IV39_GL001648, LPJSA22_01868, SN35N_2987; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBOXYESTERASE, D-ALANYLATION, LIPOTEICHOIC ACIDS, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.RAVAUD,N.NIKOLOPOULOS,C.GRANGEASSE REVDAT 2 07-FEB-24 8AGR 1 REMARK REVDAT 1 26-APR-23 8AGR 0 JRNL AUTH N.NIKOLOPOULOS,R.MATOS,S.RAVAUD,P.COURTIN,H.AKHERRAZ, JRNL AUTH 2 S.PALUSSIERE,V.GUEGUEN-CHAIGNON,M.SALOMON-MALLET,A.GUILLOT, JRNL AUTH 3 Y.GUERARDEL,M.P.CHAPOT-CHARTIER,C.GRANGEASSE,F.LEULIER JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF LACTIPLANTIBACILLUS PLANTARUM JRNL TITL 2 DLTE& REVEALS D-ALANYLATED LIPOTEICHOIC ACIDS AS DIRECT CUES JRNL TITL 3 SUPPORTING DROSOPHILA JUVENILE GROWTH. JRNL REF ELIFE V. 12 2023 JRNL REFN ESSN 2050-084X JRNL PMID 37042660 JRNL DOI 10.7554/ELIFE.84669 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3142 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4544 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 216 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 845 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01300 REMARK 3 B22 (A**2) : 0.00600 REMARK 3 B33 (A**2) : 0.00500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.901 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5268 ; 0.008 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 4779 ; 0.031 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7127 ; 1.353 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11167 ; 0.712 ; 1.554 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 673 ; 6.172 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ; 8.798 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 931 ;14.684 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 793 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5981 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1039 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 903 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 52 ; 0.267 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2556 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 584 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.016 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2616 ; 1.291 ; 1.381 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2616 ; 1.287 ; 1.381 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3274 ; 1.888 ; 2.060 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3275 ; 1.889 ; 2.061 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2652 ; 2.477 ; 1.699 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2653 ; 2.477 ; 1.699 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3838 ; 3.806 ; 2.426 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3839 ; 3.806 ; 2.426 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64951 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 47.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WWX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5K, TRIS PH8.5, LISO4, REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.85950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 32 REMARK 465 ALA A 33 REMARK 465 THR A 34 REMARK 465 GLU A 35 REMARK 465 ARG A 36 REMARK 465 GLN A 37 REMARK 465 ALA A 38 REMARK 465 ALA A 39 REMARK 465 ILE A 40 REMARK 465 ALA A 41 REMARK 465 LYS A 42 REMARK 465 LYS A 43 REMARK 465 ARG A 44 REMARK 465 GLN A 45 REMARK 465 THR A 46 REMARK 465 ASP A 47 REMARK 465 LYS A 48 REMARK 465 ALA A 49 REMARK 465 LEU A 50 REMARK 465 ASN A 51 REMARK 465 LYS A 52 REMARK 465 LYS A 53 REMARK 465 ALA A 54 REMARK 465 ALA A 55 REMARK 465 LEU A 56 REMARK 465 LYS A 57 REMARK 465 ASN A 58 REMARK 465 SER A 59 REMARK 465 GLN A 60 REMARK 465 LEU A 61 REMARK 465 SER A 62 REMARK 465 ARG A 63 REMARK 465 LYS A 64 REMARK 465 ILE A 65 REMARK 465 ASN A 66 REMARK 465 GLN A 67 REMARK 465 THR A 68 REMARK 465 THR A 69 REMARK 465 PHE A 70 REMARK 465 SER A 71 REMARK 465 GLY A 394 REMARK 465 ASP A 395 REMARK 465 ILE A 396 REMARK 465 LYS A 397 REMARK 465 LEU A 398 REMARK 465 GLU A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 MET B 32 REMARK 465 ALA B 33 REMARK 465 THR B 34 REMARK 465 GLU B 35 REMARK 465 ARG B 36 REMARK 465 GLN B 37 REMARK 465 ALA B 38 REMARK 465 ALA B 39 REMARK 465 ILE B 40 REMARK 465 ALA B 41 REMARK 465 LYS B 42 REMARK 465 LYS B 43 REMARK 465 ARG B 44 REMARK 465 GLN B 45 REMARK 465 THR B 46 REMARK 465 ASP B 47 REMARK 465 LYS B 48 REMARK 465 ALA B 49 REMARK 465 LEU B 50 REMARK 465 ASN B 51 REMARK 465 LYS B 52 REMARK 465 LYS B 53 REMARK 465 ALA B 54 REMARK 465 ALA B 55 REMARK 465 LEU B 56 REMARK 465 LYS B 57 REMARK 465 ASN B 58 REMARK 465 SER B 59 REMARK 465 GLN B 60 REMARK 465 LEU B 61 REMARK 465 SER B 62 REMARK 465 ARG B 63 REMARK 465 LYS B 64 REMARK 465 ILE B 65 REMARK 465 ASN B 66 REMARK 465 GLN B 67 REMARK 465 THR B 68 REMARK 465 GLY B 394 REMARK 465 ASP B 395 REMARK 465 ILE B 396 REMARK 465 LYS B 397 REMARK 465 LEU B 398 REMARK 465 GLU B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 99 -0.05 74.58 REMARK 500 LEU A 127 -136.83 51.53 REMARK 500 PHE A 241 -58.49 -121.37 REMARK 500 TYR A 373 64.14 -150.43 REMARK 500 ALA A 378 59.99 -140.32 REMARK 500 LEU B 127 -134.35 54.87 REMARK 500 PHE B 241 -61.29 -120.27 REMARK 500 LEU B 316 136.95 -179.99 REMARK 500 ALA B 378 58.40 -142.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 226 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1027 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B1014 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1015 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1016 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B1017 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B1018 DISTANCE = 7.16 ANGSTROMS DBREF1 8AGR A 34 397 UNP A0A0P7JVD2_LACPN DBREF2 8AGR A A0A0P7JVD2 28 391 DBREF1 8AGR B 34 397 UNP A0A0P7JVD2_LACPN DBREF2 8AGR B A0A0P7JVD2 28 391 SEQADV 8AGR MET A 32 UNP A0A0P7JVD INITIATING METHIONINE SEQADV 8AGR ALA A 33 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR LEU A 398 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR GLU A 399 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS A 400 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS A 401 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS A 402 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS A 403 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS A 404 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS A 405 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR MET B 32 UNP A0A0P7JVD INITIATING METHIONINE SEQADV 8AGR ALA B 33 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR LEU B 398 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR GLU B 399 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS B 400 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS B 401 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS B 402 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS B 403 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS B 404 UNP A0A0P7JVD EXPRESSION TAG SEQADV 8AGR HIS B 405 UNP A0A0P7JVD EXPRESSION TAG SEQRES 1 A 374 MET ALA THR GLU ARG GLN ALA ALA ILE ALA LYS LYS ARG SEQRES 2 A 374 GLN THR ASP LYS ALA LEU ASN LYS LYS ALA ALA LEU LYS SEQRES 3 A 374 ASN SER GLN LEU SER ARG LYS ILE ASN GLN THR THR PHE SEQRES 4 A 374 SER ASN ASN LYS ASN THR ASP GLU GLN VAL THR LYS ALA SEQRES 5 A 374 LEU ASN LEU SER HIS PHE VAL GLY SER ALA LEU VAL VAL SEQRES 6 A 374 LYS ASN ASP HIS VAL ILE TYR ASN ARG ALA PHE GLY TYR SEQRES 7 A 374 ALA ASN LYS ALA LYS ASN GLN ARG ASN LYS VAL ASN SER SEQRES 8 A 374 LYS TYR GLN ILE LEU SER ILE GLN LYS SER MET THR ALA SEQRES 9 A 374 VAL GLY ILE MET GLN LEU VAL GLN ALA GLY LYS VAL LYS SEQRES 10 A 374 LEU THR ASP PRO ILE SER LYS TYR TYR PRO THR LEU LYS SEQRES 11 A 374 HIS GLY ARG GLN THR THR LEU ARG GLN MET LEU ASP MET SEQRES 12 A 374 THR THR GLY PHE ARG LEU LYS SER GLY SER LYS GLU PHE SEQRES 13 A 374 LEU PRO GLU ASN GLN VAL ILE ASP PHE ALA ALA HIS ASN SEQRES 14 A 374 VAL PHE TYR TYR PRO ASP LYS ASN GLY ILE TYR ASN TYR SEQRES 15 A 374 SER SER VAL ASN PHE LEU LEU LEU ALA GLY ILE ILE ARG SEQRES 16 A 374 LYS VAL THR GLY GLN SER TYR GLN HIS PHE PHE THR THR SEQRES 17 A 374 HIS PHE ILE ASP LYS LEU ASN LEU ASN GLU THR GLY PHE SEQRES 18 A 374 LEU ILE HIS GLY GLN GLY GLN ASP ALA THR THR GLY TYR SEQRES 19 A 374 ARG ALA LEU ALA ASP GLN THR LEU PRO ASN TYR ASP GLN SEQRES 20 A 374 THR MET PRO GLU SER LYS SER GLN MET ALA ASN GLU LEU SEQRES 21 A 374 GLY THR GLY GLN VAL TYR MET SER THR ALA ASP LEU PHE SEQRES 22 A 374 THR VAL GLU SER ALA ILE LEU LYS GLY GLN LEU LEU SER SEQRES 23 A 374 LYS LYS ASN VAL ALA ILE LEU HIS THR ARG THR ALA THR SEQRES 24 A 374 GLY GLU TYR GLY GLY GLY VAL TYR ASN MET SER ASN GLY SEQRES 25 A 374 ILE ARG SER HIS GLY LEU GLY TYR GLY TYR GLU SER SER SEQRES 26 A 374 ILE PHE LEU SER PRO ASP GLY LYS THR GLY VAL VAL LEU SEQRES 27 A 374 MET SER ASN TYR TYR ARG LYS ALA ALA GLY ILE GLN ALA SEQRES 28 A 374 THR ALA ASN LYS ILE PHE THR GLU LEU MET LYS GLY ASP SEQRES 29 A 374 ILE LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 374 MET ALA THR GLU ARG GLN ALA ALA ILE ALA LYS LYS ARG SEQRES 2 B 374 GLN THR ASP LYS ALA LEU ASN LYS LYS ALA ALA LEU LYS SEQRES 3 B 374 ASN SER GLN LEU SER ARG LYS ILE ASN GLN THR THR PHE SEQRES 4 B 374 SER ASN ASN LYS ASN THR ASP GLU GLN VAL THR LYS ALA SEQRES 5 B 374 LEU ASN LEU SER HIS PHE VAL GLY SER ALA LEU VAL VAL SEQRES 6 B 374 LYS ASN ASP HIS VAL ILE TYR ASN ARG ALA PHE GLY TYR SEQRES 7 B 374 ALA ASN LYS ALA LYS ASN GLN ARG ASN LYS VAL ASN SER SEQRES 8 B 374 LYS TYR GLN ILE LEU SER ILE GLN LYS SER MET THR ALA SEQRES 9 B 374 VAL GLY ILE MET GLN LEU VAL GLN ALA GLY LYS VAL LYS SEQRES 10 B 374 LEU THR ASP PRO ILE SER LYS TYR TYR PRO THR LEU LYS SEQRES 11 B 374 HIS GLY ARG GLN THR THR LEU ARG GLN MET LEU ASP MET SEQRES 12 B 374 THR THR GLY PHE ARG LEU LYS SER GLY SER LYS GLU PHE SEQRES 13 B 374 LEU PRO GLU ASN GLN VAL ILE ASP PHE ALA ALA HIS ASN SEQRES 14 B 374 VAL PHE TYR TYR PRO ASP LYS ASN GLY ILE TYR ASN TYR SEQRES 15 B 374 SER SER VAL ASN PHE LEU LEU LEU ALA GLY ILE ILE ARG SEQRES 16 B 374 LYS VAL THR GLY GLN SER TYR GLN HIS PHE PHE THR THR SEQRES 17 B 374 HIS PHE ILE ASP LYS LEU ASN LEU ASN GLU THR GLY PHE SEQRES 18 B 374 LEU ILE HIS GLY GLN GLY GLN ASP ALA THR THR GLY TYR SEQRES 19 B 374 ARG ALA LEU ALA ASP GLN THR LEU PRO ASN TYR ASP GLN SEQRES 20 B 374 THR MET PRO GLU SER LYS SER GLN MET ALA ASN GLU LEU SEQRES 21 B 374 GLY THR GLY GLN VAL TYR MET SER THR ALA ASP LEU PHE SEQRES 22 B 374 THR VAL GLU SER ALA ILE LEU LYS GLY GLN LEU LEU SER SEQRES 23 B 374 LYS LYS ASN VAL ALA ILE LEU HIS THR ARG THR ALA THR SEQRES 24 B 374 GLY GLU TYR GLY GLY GLY VAL TYR ASN MET SER ASN GLY SEQRES 25 B 374 ILE ARG SER HIS GLY LEU GLY TYR GLY TYR GLU SER SER SEQRES 26 B 374 ILE PHE LEU SER PRO ASP GLY LYS THR GLY VAL VAL LEU SEQRES 27 B 374 MET SER ASN TYR TYR ARG LYS ALA ALA GLY ILE GLN ALA SEQRES 28 B 374 THR ALA ASN LYS ILE PHE THR GLU LEU MET LYS GLY ASP SEQRES 29 B 374 ILE LYS LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 501 5 HET SO4 A 502 5 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET SO4 B 501 5 HET EDO B 502 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 10 HOH *845(H2 O) HELIX 1 AA1 ASN A 72 SER A 87 1 16 HELIX 2 AA2 ILE A 129 ALA A 144 1 16 HELIX 3 AA3 PRO A 152 TYR A 157 1 6 HELIX 4 AA4 THR A 167 MET A 174 1 8 HELIX 5 AA5 PRO A 189 VAL A 201 1 13 HELIX 6 AA6 PRO A 205 ASN A 208 5 4 HELIX 7 AA7 SER A 215 GLY A 230 1 16 HELIX 8 AA8 SER A 232 PHE A 241 1 10 HELIX 9 AA9 ILE A 254 GLY A 256 5 3 HELIX 10 AB1 SER A 283 ASN A 289 1 7 HELIX 11 AB2 SER A 299 LYS A 312 1 14 HELIX 12 AB3 SER A 317 HIS A 325 1 9 HELIX 13 AB4 ARG A 375 ALA A 378 5 4 HELIX 14 AB5 GLY A 379 LYS A 393 1 15 HELIX 15 AB6 ASN B 72 SER B 87 1 16 HELIX 16 AB7 ILE B 129 ALA B 144 1 16 HELIX 17 AB8 PRO B 152 TYR B 156 5 5 HELIX 18 AB9 THR B 167 ASP B 173 1 7 HELIX 19 AC1 PRO B 189 VAL B 201 1 13 HELIX 20 AC2 PRO B 205 ASN B 208 5 4 HELIX 21 AC3 SER B 215 GLY B 230 1 16 HELIX 22 AC4 SER B 232 PHE B 241 1 10 HELIX 23 AC5 ILE B 254 GLY B 256 5 3 HELIX 24 AC6 SER B 283 GLU B 290 1 8 HELIX 25 AC7 SER B 299 LYS B 312 1 14 HELIX 26 AC8 SER B 317 HIS B 325 1 9 HELIX 27 AC9 ARG B 375 ALA B 378 5 4 HELIX 28 AD1 GLY B 379 LYS B 393 1 15 SHEET 1 AA1 7 HIS A 100 PHE A 107 0 SHEET 2 AA1 7 GLY A 91 LYS A 97 -1 N ALA A 93 O ARG A 105 SHEET 3 AA1 7 GLY A 366 SER A 371 -1 O GLY A 366 N VAL A 96 SHEET 4 AA1 7 TYR A 353 LEU A 359 -1 N GLU A 354 O SER A 371 SHEET 5 AA1 7 GLY A 343 GLY A 350 -1 N GLY A 348 O SER A 355 SHEET 6 AA1 7 VAL A 337 MET A 340 -1 N TYR A 338 O ARG A 345 SHEET 7 AA1 7 TYR A 333 GLY A 334 -1 N GLY A 334 O VAL A 337 SHEET 1 AA2 2 TYR A 109 ASN A 111 0 SHEET 2 AA2 2 GLN A 116 ARG A 117 -1 O GLN A 116 N ASN A 111 SHEET 1 AA3 3 TYR A 124 GLN A 125 0 SHEET 2 AA3 3 VAL A 296 MET A 298 -1 O MET A 298 N TYR A 124 SHEET 3 AA3 3 THR A 250 PHE A 252 -1 N GLY A 251 O TYR A 297 SHEET 1 AA4 2 PHE A 178 ARG A 179 0 SHEET 2 AA4 2 PHE A 202 TYR A 203 -1 O PHE A 202 N ARG A 179 SHEET 1 AA5 7 HIS B 100 PHE B 107 0 SHEET 2 AA5 7 GLY B 91 LYS B 97 -1 N GLY B 91 O PHE B 107 SHEET 3 AA5 7 GLY B 366 SER B 371 -1 O VAL B 368 N LEU B 94 SHEET 4 AA5 7 TYR B 353 LEU B 359 -1 N GLU B 354 O SER B 371 SHEET 5 AA5 7 GLY B 343 GLY B 350 -1 N GLY B 348 O SER B 355 SHEET 6 AA5 7 VAL B 337 MET B 340 -1 N TYR B 338 O ARG B 345 SHEET 7 AA5 7 TYR B 333 GLY B 334 -1 N GLY B 334 O VAL B 337 SHEET 1 AA6 2 TYR B 109 ASN B 111 0 SHEET 2 AA6 2 GLN B 116 ARG B 117 -1 O GLN B 116 N ASN B 111 SHEET 1 AA7 3 TYR B 124 GLN B 125 0 SHEET 2 AA7 3 VAL B 296 MET B 298 -1 O MET B 298 N TYR B 124 SHEET 3 AA7 3 THR B 250 PHE B 252 -1 N GLY B 251 O TYR B 297 SHEET 1 AA8 2 PHE B 178 ARG B 179 0 SHEET 2 AA8 2 PHE B 202 TYR B 203 -1 O PHE B 202 N ARG B 179 CRYST1 60.874 95.719 68.013 90.00 96.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016427 0.000000 0.001802 0.00000 SCALE2 0.000000 0.010447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014791 0.00000