HEADER ISOMERASE 21-JUL-22 8AHE
TITLE PAC-FRAGMENTDEL: PHOTOACTIVATED COVALENT CAPTURE OF DNA ENCODED
TITLE 2 FRAGMENTS FOR HIT DISCOVERY
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 5.1.3.14;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS;
SOURCE 3 ORGANISM_TAXID: 1392;
SOURCE 4 GENE: GBAA_5509;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS INHIBITOR, COMPLEX, EPIMERASE, TECHNOLOGY, ISOMERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR L.M.BAKER,J.B.MURRAY,R.E.HUBBARD
REVDAT 3 31-JAN-24 8AHE 1 REMARK
REVDAT 2 07-DEC-22 8AHE 1 JRNL
REVDAT 1 14-SEP-22 8AHE 0
JRNL AUTH H.MA,J.B.MURRAY,H.LUO,X.CHENG,Q.CHEN,C.SONG,C.DUAN,P.TAN,
JRNL AUTH 2 L.ZHANG,J.LIU,B.A.MORGAN,J.LI,J.WAN,L.M.BAKER,W.FINNIE,
JRNL AUTH 3 L.GUETZOYAN,R.HARRIS,N.HENDRICKSON,N.MATASSOVA,H.SIMMONITE,
JRNL AUTH 4 J.SMITH,R.E.HUBBARD,G.LIU
JRNL TITL PAC-FRAGMENTDEL - PHOTOACTIVATED COVALENT CAPTURE OF
JRNL TITL 2 DNA-ENCODED FRAGMENTS FOR HIT DISCOVERY.
JRNL REF RSC MED CHEM V. 13 1341 2022
JRNL REFN ESSN 2632-8682
JRNL PMID 36426238
JRNL DOI 10.1039/D2MD00197G
REMARK 2
REMARK 2 RESOLUTION. 2.11 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0352
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.16
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 81.9
REMARK 3 NUMBER OF REFLECTIONS : 39374
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING + TEST SET) : NULL
REMARK 3 R VALUE (WORKING SET) : 0.184
REMARK 3 FREE R VALUE : 0.235
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.052
REMARK 3 FREE R VALUE TEST SET COUNT : 1989
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16
REMARK 3 REFLECTION IN BIN (WORKING SET) : 228
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.92
REMARK 3 BIN R VALUE (WORKING SET) : 0.3310
REMARK 3 BIN FREE R VALUE SET COUNT : 14
REMARK 3 BIN FREE R VALUE : 0.4040
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5779
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 64
REMARK 3 SOLVENT ATOMS : 229
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.58
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00500
REMARK 3 B22 (A**2) : 0.00500
REMARK 3 B33 (A**2) : -0.01000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.288
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.143
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5941 ; 0.012 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): 5546 ; 0.002 ; 0.016
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8058 ; 1.632 ; 1.645
REMARK 3 BOND ANGLES OTHERS (DEGREES): 12931 ; 0.561 ; 1.556
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 736 ; 6.712 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ; 7.328 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1064 ;18.356 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 940 ; 0.081 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6659 ; 0.008 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1067 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1180 ; 0.214 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 99 ; 0.183 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2829 ; 0.163 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 243 ; 0.183 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2950 ; 5.108 ; 4.397
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2950 ; 5.108 ; 4.397
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3684 ; 6.614 ; 6.600
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3685 ; 6.614 ; 6.600
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2991 ; 7.192 ; 5.075
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2968 ; 7.026 ; 5.046
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4374 ; 9.727 ; 7.339
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4339 ; 9.505 ; 7.294
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK BULK SOLVENT
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR
REMARK 3 RIDING POSITIONS
REMARK 4
REMARK 4 8AHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-22.
REMARK 100 THE DEPOSITION ID IS D_1292124475.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 27-NOV-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763
REMARK 200 MONOCHROMATOR : LAUE
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021
REMARK 200 DATA SCALING SOFTWARE : AIMLESS V0.7.7
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39374
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.108
REMARK 200 RESOLUTION RANGE LOW (A) : 85.161
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6
REMARK 200 DATA REDUNDANCY : 26.80
REMARK 200 R MERGE (I) : 0.21600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29
REMARK 200 COMPLETENESS FOR SHELL (%) : 58.7
REMARK 200 DATA REDUNDANCY IN SHELL : 25.50
REMARK 200 R MERGE FOR SHELL (I) : 2.65700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: REFMAC 5
REMARK 200 STARTING MODEL: 3BEO
REMARK 200
REMARK 200 REMARK: NEEDLES
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.02
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE 50 MM BIS-TRIS
REMARK 280 PH 5.6 28% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE
REMARK 280 292K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.10350
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.55950
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.55950
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.05175
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.55950
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.55950
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.15525
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.55950
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.55950
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.05175
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.55950
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.55950
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.15525
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.10350
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 30550 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -54.55950
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 54.55950
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -34.05175
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH B 518 LIES ON A SPECIAL POSITION.
REMARK 375 HOH B 594 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A -3
REMARK 465 PRO A -2
REMARK 465 MET A -1
REMARK 465 ALA A 0
REMARK 465 MET A 1
REMARK 465 THR A 2
REMARK 465 SER B -3
REMARK 465 PRO B -2
REMARK 465 MET B -1
REMARK 465 ALA B 0
REMARK 465 MET B 1
REMARK 465 THR B 2
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 249 CG CD OE1 OE2
REMARK 470 LYS A 344 CD CE NZ
REMARK 470 ASN B 64 CG OD1 ND2
REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 249 CG CD OE1 OE2
REMARK 470 GLU B 340 CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HG1 THR A 307 H ARG A 309 1.16
REMARK 500 HG1 THR A 284 H SER A 286 1.19
REMARK 500 HG1 THR B 284 H SER B 286 1.30
REMARK 500 OD1 ASP A 324 HG1 THR A 327 1.48
REMARK 500 O VAL A 247 H ALA A 251 1.56
REMARK 500 HD22 ASN A 213 OD2 ASP A 285 1.57
REMARK 500 OD1 ASP A 324 OG1 THR A 327 2.09
REMARK 500 O SER A 191 O HOH A 501 2.14
REMARK 500 O4 SO4 B 403 O HOH B 501 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH B 604 O HOH B 604 8555 0.66
REMARK 500 OE2 GLU A 89 HD1 HIS A 232 5555 1.49
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLU B 311 CD GLU B 311 OE1 0.069
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES
REMARK 500 ARG A 278 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 91 65.72 37.82
REMARK 500 GLU A 122 78.64 64.26
REMARK 500 TRP A 128 14.54 59.23
REMARK 500 ASP A 167 107.71 -59.67
REMARK 500 PRO A 245 -17.06 -44.71
REMARK 500 ASP A 257 50.63 -141.23
REMARK 500 ARG A 309 68.59 -119.60
REMARK 500 GLU B 122 70.61 66.26
REMARK 500 ASN B 244 136.65 -35.78
REMARK 500 ARG B 309 65.57 -114.81
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 MET B 243 ASN B 244 146.57
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 78 0.17 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
DBREF1 8AHE A 1 371 UNP A0A348ACF3_BACAN
DBREF2 8AHE A A0A348ACF3 1 371
DBREF1 8AHE B 1 371 UNP A0A348ACF3_BACAN
DBREF2 8AHE B A0A348ACF3 1 371
SEQADV 8AHE SER A -3 UNP A0A348ACF EXPRESSION TAG
SEQADV 8AHE PRO A -2 UNP A0A348ACF EXPRESSION TAG
SEQADV 8AHE MET A -1 UNP A0A348ACF EXPRESSION TAG
SEQADV 8AHE ALA A 0 UNP A0A348ACF EXPRESSION TAG
SEQADV 8AHE SER B -3 UNP A0A348ACF EXPRESSION TAG
SEQADV 8AHE PRO B -2 UNP A0A348ACF EXPRESSION TAG
SEQADV 8AHE MET B -1 UNP A0A348ACF EXPRESSION TAG
SEQADV 8AHE ALA B 0 UNP A0A348ACF EXPRESSION TAG
SEQRES 1 A 375 SER PRO MET ALA MET THR GLU ARG LEU LYS VAL MET THR
SEQRES 2 A 375 ILE PHE GLY THR ARG PRO GLU ALA ILE LYS MET ALA PRO
SEQRES 3 A 375 LEU VAL LEU GLU LEU GLN LYS HIS PRO GLU LYS ILE GLU
SEQRES 4 A 375 SER ILE VAL THR VAL THR ALA GLN HIS ARG GLN MET LEU
SEQRES 5 A 375 ASP GLN VAL LEU SER ILE PHE GLY ILE THR PRO ASP PHE
SEQRES 6 A 375 ASP LEU ASN ILE MET LYS ASP ARG GLN THR LEU ILE ASP
SEQRES 7 A 375 ILE THR THR ARG GLY LEU GLU GLY LEU ASP LYS VAL MET
SEQRES 8 A 375 LYS GLU ALA LYS PRO ASP ILE VAL LEU VAL HIS GLY ASP
SEQRES 9 A 375 THR THR THR THR PHE ILE ALA SER LEU ALA ALA PHE TYR
SEQRES 10 A 375 ASN GLN ILE PRO VAL GLY HIS VAL GLU ALA GLY LEU ARG
SEQRES 11 A 375 THR TRP ASP LYS TYR SER PRO TYR PRO GLU GLU MET ASN
SEQRES 12 A 375 ARG GLN LEU THR GLY VAL MET ALA ASP LEU HIS PHE SER
SEQRES 13 A 375 PRO THR ALA LYS SER ALA THR ASN LEU GLN LYS GLU ASN
SEQRES 14 A 375 LYS ASP GLU SER ARG ILE PHE ILE THR GLY ASN THR ALA
SEQRES 15 A 375 ILE ASP ALA LEU LYS THR THR VAL LYS GLU THR TYR SER
SEQRES 16 A 375 HIS PRO VAL LEU GLU LYS LEU GLY ASN ASN ARG LEU VAL
SEQRES 17 A 375 LEU MET THR ALA HIS ARG ARG GLU ASN LEU GLY GLU PRO
SEQRES 18 A 375 MET ARG ASN MET PHE ARG ALA ILE LYS ARG LEU VAL ASP
SEQRES 19 A 375 LYS HIS GLU ASP VAL GLN VAL VAL TYR PRO VAL HIS MET
SEQRES 20 A 375 ASN PRO VAL VAL ARG GLU THR ALA ASN ASP ILE LEU GLY
SEQRES 21 A 375 ASP TYR GLY ARG ILE HIS LEU ILE GLU PRO LEU ASP VAL
SEQRES 22 A 375 ILE ASP PHE HIS ASN VAL ALA ALA ARG SER TYR LEU MET
SEQRES 23 A 375 LEU THR ASP SER GLY GLY VAL GLN GLU GLU ALA PRO SER
SEQRES 24 A 375 LEU GLY VAL PRO VAL LEU VAL LEU ARG ASP THR THR GLU
SEQRES 25 A 375 ARG PRO GLU GLY ILE GLU ALA GLY THR LEU LYS LEU ALA
SEQRES 26 A 375 GLY THR ASP GLU GLU THR ILE PHE SER LEU ALA ASP GLU
SEQRES 27 A 375 LEU LEU SER ASP LYS GLU ALA HIS ASP LYS MET SER LYS
SEQRES 28 A 375 ALA SER ASN PRO TYR GLY ASP GLY ARG ALA SER GLU ARG
SEQRES 29 A 375 ILE VAL GLU ALA ILE LEU LYS HIS PHE ASN LYS
SEQRES 1 B 375 SER PRO MET ALA MET THR GLU ARG LEU LYS VAL MET THR
SEQRES 2 B 375 ILE PHE GLY THR ARG PRO GLU ALA ILE LYS MET ALA PRO
SEQRES 3 B 375 LEU VAL LEU GLU LEU GLN LYS HIS PRO GLU LYS ILE GLU
SEQRES 4 B 375 SER ILE VAL THR VAL THR ALA GLN HIS ARG GLN MET LEU
SEQRES 5 B 375 ASP GLN VAL LEU SER ILE PHE GLY ILE THR PRO ASP PHE
SEQRES 6 B 375 ASP LEU ASN ILE MET LYS ASP ARG GLN THR LEU ILE ASP
SEQRES 7 B 375 ILE THR THR ARG GLY LEU GLU GLY LEU ASP LYS VAL MET
SEQRES 8 B 375 LYS GLU ALA LYS PRO ASP ILE VAL LEU VAL HIS GLY ASP
SEQRES 9 B 375 THR THR THR THR PHE ILE ALA SER LEU ALA ALA PHE TYR
SEQRES 10 B 375 ASN GLN ILE PRO VAL GLY HIS VAL GLU ALA GLY LEU ARG
SEQRES 11 B 375 THR TRP ASP LYS TYR SER PRO TYR PRO GLU GLU MET ASN
SEQRES 12 B 375 ARG GLN LEU THR GLY VAL MET ALA ASP LEU HIS PHE SER
SEQRES 13 B 375 PRO THR ALA LYS SER ALA THR ASN LEU GLN LYS GLU ASN
SEQRES 14 B 375 LYS ASP GLU SER ARG ILE PHE ILE THR GLY ASN THR ALA
SEQRES 15 B 375 ILE ASP ALA LEU LYS THR THR VAL LYS GLU THR TYR SER
SEQRES 16 B 375 HIS PRO VAL LEU GLU LYS LEU GLY ASN ASN ARG LEU VAL
SEQRES 17 B 375 LEU MET THR ALA HIS ARG ARG GLU ASN LEU GLY GLU PRO
SEQRES 18 B 375 MET ARG ASN MET PHE ARG ALA ILE LYS ARG LEU VAL ASP
SEQRES 19 B 375 LYS HIS GLU ASP VAL GLN VAL VAL TYR PRO VAL HIS MET
SEQRES 20 B 375 ASN PRO VAL VAL ARG GLU THR ALA ASN ASP ILE LEU GLY
SEQRES 21 B 375 ASP TYR GLY ARG ILE HIS LEU ILE GLU PRO LEU ASP VAL
SEQRES 22 B 375 ILE ASP PHE HIS ASN VAL ALA ALA ARG SER TYR LEU MET
SEQRES 23 B 375 LEU THR ASP SER GLY GLY VAL GLN GLU GLU ALA PRO SER
SEQRES 24 B 375 LEU GLY VAL PRO VAL LEU VAL LEU ARG ASP THR THR GLU
SEQRES 25 B 375 ARG PRO GLU GLY ILE GLU ALA GLY THR LEU LYS LEU ALA
SEQRES 26 B 375 GLY THR ASP GLU GLU THR ILE PHE SER LEU ALA ASP GLU
SEQRES 27 B 375 LEU LEU SER ASP LYS GLU ALA HIS ASP LYS MET SER LYS
SEQRES 28 B 375 ALA SER ASN PRO TYR GLY ASP GLY ARG ALA SER GLU ARG
SEQRES 29 B 375 ILE VAL GLU ALA ILE LEU LYS HIS PHE ASN LYS
HET M2U A 401 30
HET SO4 A 402 5
HET SO4 A 403 5
HET SO4 A 404 5
HET SO4 A 405 5
HET M2U B 401 30
HET SO4 B 402 5
HET SO4 B 403 5
HETNAM M2U ~{N},5-DIMETHYL-1-PHENYL-PYRAZOLE-4-SULFONAMIDE
HETNAM SO4 SULFATE ION
FORMUL 3 M2U 2(C11 H13 N3 O2 S)
FORMUL 4 SO4 6(O4 S 2-)
FORMUL 11 HOH *229(H2 O)
HELIX 1 AA1 THR A 13 GLN A 28 1 16
HELIX 2 AA2 ARG A 45 GLY A 56 1 12
HELIX 3 AA3 THR A 71 LYS A 91 1 21
HELIX 4 AA4 THR A 101 TYR A 113 1 13
HELIX 5 AA5 PRO A 135 ALA A 147 1 13
HELIX 6 AA6 THR A 154 GLU A 164 1 11
HELIX 7 AA7 ASP A 167 SER A 169 5 3
HELIX 8 AA8 ASN A 176 VAL A 186 1 11
HELIX 9 AA9 HIS A 192 GLY A 199 1 8
HELIX 10 AB1 HIS A 209 LEU A 214 1 6
HELIX 11 AB2 GLY A 215 HIS A 232 1 18
HELIX 12 AB3 ASN A 244 GLY A 256 1 13
HELIX 13 AB4 ASP A 268 ALA A 277 1 10
HELIX 14 AB5 SER A 286 ALA A 293 1 8
HELIX 15 AB6 PRO A 294 GLY A 297 5 4
HELIX 16 AB7 ARG A 309 ALA A 315 1 7
HELIX 17 AB8 ASP A 324 ASP A 338 1 15
HELIX 18 AB9 ASP A 338 LYS A 347 1 10
HELIX 19 AC1 ARG A 356 PHE A 369 1 14
HELIX 20 AC2 PRO B 15 GLN B 28 1 14
HELIX 21 AC3 ARG B 45 PHE B 55 1 11
HELIX 22 AC4 THR B 71 LYS B 91 1 21
HELIX 23 AC5 THR B 101 TYR B 113 1 13
HELIX 24 AC6 PRO B 135 ALA B 147 1 13
HELIX 25 AC7 THR B 154 GLU B 164 1 11
HELIX 26 AC8 ASP B 167 SER B 169 5 3
HELIX 27 AC9 ASN B 176 VAL B 186 1 11
HELIX 28 AD1 HIS B 192 LEU B 198 1 7
HELIX 29 AD2 ARG B 210 LEU B 214 5 5
HELIX 30 AD3 GLY B 215 HIS B 232 1 18
HELIX 31 AD4 ASN B 244 GLY B 256 1 13
HELIX 32 AD5 ASP B 268 ALA B 277 1 10
HELIX 33 AD6 SER B 286 ALA B 293 1 8
HELIX 34 AD7 PRO B 294 GLY B 297 5 4
HELIX 35 AD8 ARG B 309 ALA B 315 1 7
HELIX 36 AD9 ASP B 324 ASP B 338 1 15
HELIX 37 AE1 ASP B 338 ALA B 348 1 11
HELIX 38 AE2 ARG B 356 PHE B 369 1 14
SHEET 1 AA1 7 PHE A 61 ASP A 62 0
SHEET 2 AA1 7 ILE A 34 VAL A 40 1 N VAL A 40 O PHE A 61
SHEET 3 AA1 7 LEU A 5 PHE A 11 1 N LEU A 5 O GLU A 35
SHEET 4 AA1 7 ILE A 94 HIS A 98 1 O LEU A 96 N MET A 8
SHEET 5 AA1 7 VAL A 118 VAL A 121 1 O VAL A 121 N VAL A 97
SHEET 6 AA1 7 LEU A 149 SER A 152 1 O LEU A 149 N HIS A 120
SHEET 7 AA1 7 ILE A 171 ILE A 173 1 O PHE A 172 N HIS A 150
SHEET 1 AA2 6 ILE A 261 ILE A 264 0
SHEET 2 AA2 6 VAL A 235 PRO A 240 1 N VAL A 237 O HIS A 262
SHEET 3 AA2 6 ARG A 202 MET A 206 1 N MET A 206 O VAL A 238
SHEET 4 AA2 6 LEU A 281 THR A 284 1 O LEU A 281 N LEU A 205
SHEET 5 AA2 6 VAL A 300 VAL A 302 1 O LEU A 301 N MET A 282
SHEET 6 AA2 6 LEU A 318 LEU A 320 1 O LYS A 319 N VAL A 302
SHEET 1 AA3 7 PHE B 61 ASP B 62 0
SHEET 2 AA3 7 ILE B 34 VAL B 40 1 N VAL B 40 O PHE B 61
SHEET 3 AA3 7 LEU B 5 PHE B 11 1 N VAL B 7 O ILE B 37
SHEET 4 AA3 7 ILE B 94 HIS B 98 1 O LEU B 96 N MET B 8
SHEET 5 AA3 7 VAL B 118 VAL B 121 1 O VAL B 121 N VAL B 97
SHEET 6 AA3 7 LEU B 149 SER B 152 1 O LEU B 149 N HIS B 120
SHEET 7 AA3 7 ILE B 171 ILE B 173 1 O PHE B 172 N HIS B 150
SHEET 1 AA4 6 ILE B 261 ILE B 264 0
SHEET 2 AA4 6 VAL B 235 PRO B 240 1 N VAL B 237 O HIS B 262
SHEET 3 AA4 6 ARG B 202 THR B 207 1 N MET B 206 O VAL B 238
SHEET 4 AA4 6 LEU B 281 THR B 284 1 O LEU B 281 N LEU B 205
SHEET 5 AA4 6 VAL B 300 VAL B 302 1 O LEU B 301 N MET B 282
SHEET 6 AA4 6 LEU B 318 LEU B 320 1 O LYS B 319 N VAL B 302
CISPEP 1 SER A 132 PRO A 133 0 -5.36
CISPEP 2 TYR A 134 PRO A 135 0 2.23
CISPEP 3 SER B 132 PRO B 133 0 0.43
CISPEP 4 TYR B 134 PRO B 135 0 2.88
CRYST1 109.119 109.119 136.207 90.00 90.00 90.00 P 41 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009164 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009164 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007342 0.00000