HEADER ANTIMICROBIAL PROTEIN 22-JUL-22 8AHO TITLE CRYSTAL STRUCTURE OF THE TRANSPEPTIDASE LDTMT2 FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS IN COMPLEX WITH CYANAMIDE ANALOGUE 31 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPEPTIDASE,LIPOPROTEIN LPPS; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: LPPS, MTR2092_25980, LPPS, ERS007683_02655; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS L, D-TRANSPEPTIDASE, LDTMT2, INHIBITOR, COVALENT, ANTIMICROBIAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.DE MUNNIK,P.A.LANG,J.BREM,C.J.SCHOFIELD REVDAT 1 02-AUG-23 8AHO 0 JRNL AUTH M.DE MUNNIK,P.A.LANG,F.DE DIOS ANTON,M.CACHO,R.H.BATES, JRNL AUTH 2 J.BREM,B.RODRIGUEZ MIQUEL,C.J.SCHOFIELD JRNL TITL HIGH-THROUGHPUT SCREEN WITH THE L,D-TRANSPEPTIDASE LDT MT2 JRNL TITL 2 OF MYCOBACTERIUM TUBERCULOSIS REVEALS NOVEL CLASSES OF JRNL TITL 3 COVALENTLY REACTING INHIBITORS. JRNL REF CHEM SCI V. 14 7262 2023 JRNL REFN ISSN 2041-6520 JRNL PMID 37416715 JRNL DOI 10.1039/D2SC06858C REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 74669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 3867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.1800 - 6.9800 0.99 2513 136 0.1980 0.2047 REMARK 3 2 6.9800 - 5.5400 1.00 2542 135 0.1790 0.2098 REMARK 3 3 5.5400 - 4.8400 1.00 2559 136 0.1558 0.1707 REMARK 3 4 4.8400 - 4.4000 1.00 2532 146 0.1386 0.1804 REMARK 3 5 4.4000 - 4.0800 1.00 2550 138 0.1424 0.1463 REMARK 3 6 4.0800 - 3.8400 0.97 2441 148 0.1935 0.2639 REMARK 3 7 3.8400 - 3.6500 0.97 2474 131 0.2198 0.2734 REMARK 3 8 3.6500 - 3.4900 0.98 2485 150 0.2084 0.2424 REMARK 3 9 3.4900 - 3.3600 1.00 2525 129 0.2070 0.2584 REMARK 3 10 3.3600 - 3.2400 1.00 2562 138 0.2132 0.2590 REMARK 3 11 3.2400 - 3.1400 1.00 2535 134 0.2037 0.2773 REMARK 3 12 3.1400 - 3.0500 1.00 2538 121 0.2194 0.2963 REMARK 3 13 3.0500 - 2.9700 1.00 2541 152 0.2242 0.3003 REMARK 3 14 2.9700 - 2.9000 1.00 2580 142 0.2276 0.2852 REMARK 3 15 2.9000 - 2.8300 1.00 2544 123 0.2406 0.3318 REMARK 3 16 2.8300 - 2.7700 1.00 2509 159 0.2515 0.3193 REMARK 3 17 2.7700 - 2.7200 1.00 2568 129 0.2501 0.2595 REMARK 3 18 2.7200 - 2.6700 1.00 2519 136 0.2917 0.3141 REMARK 3 19 2.6600 - 2.6200 1.00 2515 126 0.2944 0.3263 REMARK 3 20 2.6200 - 2.5700 1.00 2565 152 0.2583 0.3527 REMARK 3 21 2.5700 - 2.5300 1.00 2523 126 0.2505 0.3131 REMARK 3 22 2.5300 - 2.4900 1.00 2550 141 0.2719 0.2889 REMARK 3 23 2.4900 - 2.4600 1.00 2522 157 0.2688 0.2980 REMARK 3 24 2.4600 - 2.4200 1.00 2581 114 0.2803 0.2740 REMARK 3 25 2.4200 - 2.3900 1.00 2517 135 0.2701 0.3353 REMARK 3 26 2.3900 - 2.3600 1.00 2475 157 0.2994 0.3201 REMARK 3 27 2.3600 - 2.3300 1.00 2598 161 0.2856 0.3243 REMARK 3 28 2.3300 - 2.3000 0.96 2439 115 0.2980 0.3250 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5139-103.0114 17.5027 REMARK 3 T TENSOR REMARK 3 T11: 0.3074 T22: 0.3445 REMARK 3 T33: 0.3153 T12: 0.0521 REMARK 3 T13: -0.0249 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.3245 L22: 0.3851 REMARK 3 L33: 3.5274 L12: -0.0054 REMARK 3 L13: -0.9055 L23: 0.6570 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.1071 S13: 0.0282 REMARK 3 S21: -0.0736 S22: 0.0677 S23: 0.0048 REMARK 3 S31: -0.1859 S32: 0.0174 S33: -0.0847 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4300 -91.9632 54.4187 REMARK 3 T TENSOR REMARK 3 T11: 0.3473 T22: 0.3037 REMARK 3 T33: 0.2874 T12: -0.0282 REMARK 3 T13: 0.0048 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.5111 L22: 1.5568 REMARK 3 L33: 2.2798 L12: -0.2235 REMARK 3 L13: 0.2336 L23: -0.3724 REMARK 3 S TENSOR REMARK 3 S11: 0.0935 S12: -0.4001 S13: 0.1584 REMARK 3 S21: 0.0633 S22: -0.1688 S23: -0.1384 REMARK 3 S31: -0.1985 S32: 0.0866 S33: 0.0710 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2234 -77.4067 -34.9629 REMARK 3 T TENSOR REMARK 3 T11: 0.2827 T22: 0.2887 REMARK 3 T33: 0.3344 T12: -0.0203 REMARK 3 T13: 0.0417 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.0416 L22: 4.1597 REMARK 3 L33: 2.5423 L12: -0.0768 REMARK 3 L13: 1.5843 L23: -0.4880 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -0.0073 S13: 0.1717 REMARK 3 S21: -0.0221 S22: -0.0287 S23: -0.1183 REMARK 3 S31: -0.1542 S32: 0.1383 S33: 0.0221 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4713 -83.0338 -30.3363 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.3973 REMARK 3 T33: 0.2872 T12: -0.0233 REMARK 3 T13: -0.0051 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.8185 L22: 2.4990 REMARK 3 L33: 3.3139 L12: -0.0357 REMARK 3 L13: 0.1681 L23: -1.4348 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.2970 S13: 0.0376 REMARK 3 S21: -0.1374 S22: 0.0334 S23: 0.1718 REMARK 3 S31: -0.0716 S32: -0.0898 S33: 0.0044 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0015 -90.9013 0.6557 REMARK 3 T TENSOR REMARK 3 T11: 0.3719 T22: 0.4271 REMARK 3 T33: 0.3171 T12: 0.1519 REMARK 3 T13: -0.0179 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.6276 L22: 0.2845 REMARK 3 L33: 2.4134 L12: 0.4214 REMARK 3 L13: 0.2093 L23: 0.2050 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0374 S13: -0.0013 REMARK 3 S21: 0.1880 S22: 0.1284 S23: -0.0712 REMARK 3 S31: -0.1139 S32: 0.0751 S33: -0.1146 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 271 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0385 -97.5098 17.4855 REMARK 3 T TENSOR REMARK 3 T11: 0.4891 T22: 0.4226 REMARK 3 T33: 0.3018 T12: 0.0529 REMARK 3 T13: -0.0761 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.0867 L22: 1.7272 REMARK 3 L33: 1.5613 L12: -0.3420 REMARK 3 L13: -0.1944 L23: 0.7900 REMARK 3 S TENSOR REMARK 3 S11: 0.2260 S12: 0.0759 S13: -0.2621 REMARK 3 S21: 0.1586 S22: -0.2102 S23: 0.0883 REMARK 3 S31: 0.3440 S32: -0.1826 S33: -0.0341 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 61.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6RRM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM NITRATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.13050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 54 REMARK 465 SER A 55 REMARK 465 ASP A 56 REMARK 465 LEU A 57 REMARK 465 LEU A 58 REMARK 465 ALA A 408 REMARK 465 GLN B 54 REMARK 465 SER B 55 REMARK 465 ASP B 56 REMARK 465 LEU B 57 REMARK 465 ALA B 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 59 CG1 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 104 NE CZ NH1 NH2 REMARK 470 ARG A 122 CZ NH1 NH2 REMARK 470 ARG A 123 CZ NH1 NH2 REMARK 470 LEU A 131 CD1 REMARK 470 LEU A 133 CD1 REMARK 470 SER A 147 OG REMARK 470 LYS A 186 NZ REMARK 470 LYS A 189 CE NZ REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 ASN A 313 CG OD1 ND2 REMARK 470 LEU B 58 CD1 CD2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 VAL B 71 CG1 CG2 REMARK 470 GLN B 117 CD OE1 NE2 REMARK 470 LEU B 133 CG CD1 CD2 REMARK 470 LYS B 186 NZ REMARK 470 LYS B 189 CE NZ REMARK 470 LYS B 217 CE NZ REMARK 470 LYS B 299 CD CE NZ REMARK 470 ILE B 301 CD1 REMARK 470 ASN B 313 CG OD1 ND2 REMARK 470 VAL B 322 CG1 CG2 REMARK 470 ARG B 402 NE CZ NH1 NH2 REMARK 470 LYS B 407 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 280 -164.25 -102.55 REMARK 500 HIS A 347 -59.94 -140.41 REMARK 500 THR A 350 11.94 -141.61 REMARK 500 ASN B 227 64.57 -100.21 REMARK 500 MET B 280 -167.97 -100.44 REMARK 500 HIS B 347 -58.52 -140.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 806 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A 807 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH B 886 DISTANCE = 6.02 ANGSTROMS DBREF1 8AHO A 56 353 UNP A0A8D5X3I3_MYCTX DBREF2 8AHO A A0A8D5X3I3 28 325 DBREF1 8AHO A 354 408 UNP A0A655I6I1_MYCTX DBREF2 8AHO A A0A655I6I1 395 449 DBREF1 8AHO B 56 353 UNP A0A8D5X3I3_MYCTX DBREF2 8AHO B A0A8D5X3I3 28 325 DBREF1 8AHO B 354 408 UNP A0A655I6I1_MYCTX DBREF2 8AHO B A0A655I6I1 395 449 SEQADV 8AHO GLN A 54 UNP A0A8D5X3I EXPRESSION TAG SEQADV 8AHO SER A 55 UNP A0A8D5X3I EXPRESSION TAG SEQADV 8AHO GLN B 54 UNP A0A8D5X3I EXPRESSION TAG SEQADV 8AHO SER B 55 UNP A0A8D5X3I EXPRESSION TAG SEQRES 1 A 355 GLN SER ASP LEU LEU VAL PRO LYS LEU THR ALA SER VAL SEQRES 2 A 355 THR ASP GLY ALA VAL GLY VAL THR VAL ASP ALA PRO VAL SEQRES 3 A 355 SER VAL THR ALA ALA ASP GLY VAL LEU ALA ALA VAL THR SEQRES 4 A 355 MET VAL ASN ASP ASN GLY ARG PRO VAL ALA GLY ARG LEU SEQRES 5 A 355 SER PRO ASP GLY LEU ARG TRP SER THR THR GLU GLN LEU SEQRES 6 A 355 GLY TYR ASN ARG ARG TYR THR LEU ASN ALA THR ALA LEU SEQRES 7 A 355 GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR PHE GLN SEQRES 8 A 355 THR SER SER PRO ALA HIS LEU THR MET PRO TYR VAL MET SEQRES 9 A 355 PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU PRO VAL SEQRES 10 A 355 ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG GLY ALA SEQRES 11 A 355 ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO PRO VAL SEQRES 12 A 355 GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU VAL ARG SEQRES 13 A 355 TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR ALA VAL SEQRES 14 A 355 ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU GLY GLU SEQRES 15 A 355 GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS PHE THR SEQRES 16 A 355 ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP ASN THR SEQRES 17 A 355 LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL VAL LYS SEQRES 18 A 355 SER MET PRO THR SER MET GLY LYS ASP SER THR PRO THR SEQRES 19 A 355 ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR LYS HIS SEQRES 20 A 355 ILE ILE MET ASP SER SER THR TYR GLY VAL PRO VAL ASN SEQRES 21 A 355 SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP ALA THR SEQRES 22 A 355 GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER ALA PRO SEQRES 23 A 355 TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR SER HIS SEQRES 24 A 355 GLY QCS LEU ASN VAL SER PRO SER ASN ALA GLN TRP PHE SEQRES 25 A 355 TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU VAL VAL SEQRES 26 A 355 ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP GLY LEU SEQRES 27 A 355 GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG ALA GLY SEQRES 28 A 355 ASN ALA LYS ALA SEQRES 1 B 355 GLN SER ASP LEU LEU VAL PRO LYS LEU THR ALA SER VAL SEQRES 2 B 355 THR ASP GLY ALA VAL GLY VAL THR VAL ASP ALA PRO VAL SEQRES 3 B 355 SER VAL THR ALA ALA ASP GLY VAL LEU ALA ALA VAL THR SEQRES 4 B 355 MET VAL ASN ASP ASN GLY ARG PRO VAL ALA GLY ARG LEU SEQRES 5 B 355 SER PRO ASP GLY LEU ARG TRP SER THR THR GLU GLN LEU SEQRES 6 B 355 GLY TYR ASN ARG ARG TYR THR LEU ASN ALA THR ALA LEU SEQRES 7 B 355 GLY LEU GLY GLY ALA ALA THR ARG GLN LEU THR PHE GLN SEQRES 8 B 355 THR SER SER PRO ALA HIS LEU THR MET PRO TYR VAL MET SEQRES 9 B 355 PRO GLY ASP GLY GLU VAL VAL GLY VAL GLY GLU PRO VAL SEQRES 10 B 355 ALA ILE ARG PHE ASP GLU ASN ILE ALA ASP ARG GLY ALA SEQRES 11 B 355 ALA GLU LYS ALA ILE LYS ILE THR THR ASN PRO PRO VAL SEQRES 12 B 355 GLU GLY ALA PHE TYR TRP LEU ASN ASN ARG GLU VAL ARG SEQRES 13 B 355 TRP ARG PRO GLU HIS PHE TRP LYS PRO GLY THR ALA VAL SEQRES 14 B 355 ASP VAL ALA VAL ASN THR TYR GLY VAL ASP LEU GLY GLU SEQRES 15 B 355 GLY MET PHE GLY GLU ASP ASN VAL GLN THR HIS PHE THR SEQRES 16 B 355 ILE GLY ASP GLU VAL ILE ALA THR ALA ASP ASP ASN THR SEQRES 17 B 355 LYS ILE LEU THR VAL ARG VAL ASN GLY GLU VAL VAL LYS SEQRES 18 B 355 SER MET PRO THR SER MET GLY LYS ASP SER THR PRO THR SEQRES 19 B 355 ALA ASN GLY ILE TYR ILE VAL GLY SER ARG TYR LYS HIS SEQRES 20 B 355 ILE ILE MET ASP SER SER THR TYR GLY VAL PRO VAL ASN SEQRES 21 B 355 SER PRO ASN GLY TYR ARG THR ASP VAL ASP TRP ALA THR SEQRES 22 B 355 GLN ILE SER TYR SER GLY VAL PHE VAL HIS SER ALA PRO SEQRES 23 B 355 TRP SER VAL GLY ALA GLN GLY HIS THR ASN THR SER HIS SEQRES 24 B 355 GLY QCS LEU ASN VAL SER PRO SER ASN ALA GLN TRP PHE SEQRES 25 B 355 TYR ASP HIS VAL LYS ARG GLY ASP ILE VAL GLU VAL VAL SEQRES 26 B 355 ASN THR VAL GLY GLY THR LEU PRO GLY ILE ASP GLY LEU SEQRES 27 B 355 GLY ASP TRP ASN ILE PRO TRP ASP GLN TRP ARG ALA GLY SEQRES 28 B 355 ASN ALA LYS ALA MODRES 8AHO QCS A 354 CYS MODIFIED RESIDUE MODRES 8AHO QCS B 354 CYS MODIFIED RESIDUE HET QCS A 354 9 HET QCS B 354 9 HET NO3 A 501 4 HET DMS A 502 4 HET DMS A 503 4 HET NA A 504 1 HET DMS B 601 4 HET DMS B 602 4 HET NO3 B 603 4 HET DMS B 604 4 HET DMS B 605 4 HET NA B 606 1 HET CL B 607 1 HETNAM QCS S-CARBAMOYL-L-CYSTEINE HETNAM NO3 NITRATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 1 QCS 2(C4 H8 N2 O3 S) FORMUL 3 NO3 2(N O3 1-) FORMUL 4 DMS 6(C2 H6 O S) FORMUL 6 NA 2(NA 1+) FORMUL 13 CL CL 1- FORMUL 14 HOH *393(H2 O) HELIX 1 AA1 ASP A 180 ALA A 187 1 8 HELIX 2 AA2 SER A 306 GLY A 309 5 4 HELIX 3 AA3 PRO A 339 VAL A 342 5 4 HELIX 4 AA4 SER A 358 VAL A 369 1 12 HELIX 5 AA5 PRO A 386 GLY A 390 5 5 HELIX 6 AA6 GLY A 392 ILE A 396 5 5 HELIX 7 AA7 PRO A 397 GLY A 404 1 8 HELIX 8 AA8 ASP B 180 ALA B 187 1 8 HELIX 9 AA9 SER B 306 GLY B 309 5 4 HELIX 10 AB1 PRO B 339 VAL B 342 5 4 HELIX 11 AB2 SER B 358 VAL B 369 1 12 HELIX 12 AB3 GLY B 392 ILE B 396 5 5 HELIX 13 AB4 PRO B 397 GLY B 404 1 8 SHEET 1 AA1 4 LYS A 61 ALA A 64 0 SHEET 2 AA1 4 SER A 80 ALA A 84 -1 O ALA A 84 N LYS A 61 SHEET 3 AA1 4 ARG A 111 THR A 114 -1 O TRP A 112 N VAL A 81 SHEET 4 AA1 4 GLY A 103 LEU A 105 -1 N ARG A 104 O SER A 113 SHEET 1 AA2 4 VAL A 71 VAL A 73 0 SHEET 2 AA2 4 ALA A 136 THR A 145 1 O GLN A 144 N VAL A 73 SHEET 3 AA2 4 ARG A 123 LEU A 131 -1 N LEU A 126 O LEU A 141 SHEET 4 AA2 4 VAL A 87 ASN A 95 -1 N VAL A 94 O THR A 125 SHEET 1 AA3 2 HIS A 150 THR A 152 0 SHEET 2 AA3 2 MET A 237 GLY A 239 1 O PHE A 238 N HIS A 150 SHEET 1 AA4 4 PRO A 154 MET A 157 0 SHEET 2 AA4 4 VAL A 170 PHE A 174 -1 O ARG A 173 N TYR A 155 SHEET 3 AA4 4 GLU A 207 PRO A 212 -1 O TRP A 210 N VAL A 170 SHEET 4 AA4 4 GLY A 198 TRP A 202 -1 N TYR A 201 O ARG A 209 SHEET 1 AA5 4 VAL A 163 VAL A 164 0 SHEET 2 AA5 4 VAL A 243 ILE A 249 1 O THR A 248 N VAL A 164 SHEET 3 AA5 4 ALA A 221 VAL A 226 -1 N VAL A 226 O VAL A 243 SHEET 4 AA5 4 ILE A 188 ASN A 193 -1 N ASN A 193 O ALA A 221 SHEET 1 AA6 5 GLU A 271 PRO A 277 0 SHEET 2 AA6 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MET A 276 SHEET 3 AA6 5 VAL A 253 ASP A 258 -1 N THR A 256 O THR A 265 SHEET 4 AA6 5 ILE A 374 VAL A 378 1 O GLU A 376 N ALA A 255 SHEET 5 AA6 5 GLY A 290 ILE A 293 -1 N GLY A 290 O VAL A 377 SHEET 1 AA7 4 ARG A 297 ASP A 304 0 SHEET 2 AA7 4 ARG A 319 GLN A 327 -1 O THR A 320 N MET A 303 SHEET 3 AA7 4 PHE A 334 SER A 337 -1 O VAL A 335 N THR A 326 SHEET 4 AA7 4 LEU A 355 VAL A 357 1 O LEU A 355 N PHE A 334 SHEET 1 AA8 4 LYS B 61 ALA B 64 0 SHEET 2 AA8 4 SER B 80 ALA B 84 -1 O THR B 82 N THR B 63 SHEET 3 AA8 4 ARG B 111 THR B 114 -1 O TRP B 112 N VAL B 81 SHEET 4 AA8 4 GLY B 103 LEU B 105 -1 N ARG B 104 O SER B 113 SHEET 1 AA9 4 ALA B 70 VAL B 73 0 SHEET 2 AA9 4 ALA B 136 THR B 145 1 O GLN B 144 N VAL B 73 SHEET 3 AA9 4 ARG B 123 LEU B 131 -1 N ALA B 130 O ALA B 137 SHEET 4 AA9 4 VAL B 87 VAL B 94 -1 N THR B 92 O ASN B 127 SHEET 1 AB1 2 HIS B 150 THR B 152 0 SHEET 2 AB1 2 MET B 237 GLY B 239 1 O PHE B 238 N HIS B 150 SHEET 1 AB2 4 PRO B 154 MET B 157 0 SHEET 2 AB2 4 VAL B 170 PHE B 174 -1 O ARG B 173 N TYR B 155 SHEET 3 AB2 4 GLU B 207 PRO B 212 -1 O TRP B 210 N VAL B 170 SHEET 4 AB2 4 GLY B 198 TRP B 202 -1 N TYR B 201 O ARG B 209 SHEET 1 AB3 4 VAL B 163 VAL B 164 0 SHEET 2 AB3 4 VAL B 243 ILE B 249 1 O THR B 248 N VAL B 164 SHEET 3 AB3 4 ALA B 221 VAL B 226 -1 N VAL B 226 O VAL B 243 SHEET 4 AB3 4 ILE B 188 ASN B 193 -1 N ASN B 193 O ALA B 221 SHEET 1 AB4 5 GLU B 271 PRO B 277 0 SHEET 2 AB4 5 ILE B 263 VAL B 268 -1 N LEU B 264 O MET B 276 SHEET 3 AB4 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265 SHEET 4 AB4 5 ILE B 374 VAL B 378 1 O GLU B 376 N ALA B 257 SHEET 5 AB4 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375 SHEET 1 AB5 4 ARG B 297 ASP B 304 0 SHEET 2 AB5 4 ARG B 319 GLN B 327 -1 O ALA B 325 N TYR B 298 SHEET 3 AB5 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326 SHEET 4 AB5 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334 LINK C GLY A 353 N QCS A 354 1555 1555 1.33 LINK C QCS A 354 N LEU A 355 1555 1555 1.32 LINK C GLY B 353 N QCS B 354 1555 1555 1.33 LINK C QCS B 354 N LEU B 355 1555 1555 1.33 CISPEP 1 MET A 157 PRO A 158 0 -0.20 CISPEP 2 ASN A 193 PRO A 194 0 -0.73 CISPEP 3 MET B 157 PRO B 158 0 0.06 CISPEP 4 ASN B 193 PRO B 194 0 -0.23 CRYST1 61.250 94.261 75.667 90.00 92.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016327 0.000000 0.000767 0.00000 SCALE2 0.000000 0.010609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013230 0.00000