HEADER ISOMERASE 22-JUL-22 8AHW TITLE STRUCTURE OF DCS-RESISTANT VARIANT D322N OF ALANINE RACEMASE FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: LLP IS PLP (PYRIDOXAL 5'-PHOSPHATE) BOUND AS A COMPND 8 COFACTOR TO LYS 44 EPSILON AMINO GROUP (-NH2) VIA AN ALDIMINE LINKAGE COMPND 9 OR SCHIFF BASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: ALR, RV3423C, MTCY78.06; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ENZYME, ALANINE RACEMASE, PEPTIDOGLYCAN BIOSYNTHESIS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DE CHIARA,G.PROSSER,R.W.OGRODOWICZ,L.P.S.DE CARVALHO REVDAT 4 14-FEB-24 8AHW 1 REMARK REVDAT 3 07-FEB-24 8AHW 1 REMARK REVDAT 2 05-JUL-23 8AHW 1 JRNL REVDAT 1 05-APR-23 8AHW 0 JRNL AUTH C.DE CHIARA,G.A.PROSSER,R.OGRODOWICZ,L.P.S.DE CARVALHO JRNL TITL STRUCTURE OF THE D-CYCLOSERINE-RESISTANT VARIANT D322N OF JRNL TITL 2 ALANINE RACEMASE FROM MYCOBACTERIUM TUBERCULOSIS . JRNL REF ACS BIO MED CHEM AU V. 3 233 2023 JRNL REFN ESSN 2694-2437 JRNL PMID 37363078 JRNL DOI 10.1021/ACSBIOMEDCHEMAU.2C00074 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.EVANGELOPOULOS,G.A.PROSSER,A.RODGERS,B.M.DAGG,B.KHATRI, REMARK 1 AUTH 2 M.M.HO,M.G.GUTIERREZ,T.CORTES,L.P.S.DE CARVALHO REMARK 1 TITL COMPARATIVE FITNESS ANALYSIS OF D-CYCLOSERINE RESISTANT REMARK 1 TITL 2 MUTANTS REVEALS BOTH FITNESS-NEUTRAL AND HIGH-FITNESS COST REMARK 1 TITL 3 GENOTYPES. REMARK 1 REF NAT COMMUN V. 10 4177 2019 REMARK 1 REFN ESSN 2041-1723 REMARK 1 DOI 10.1038/S41467-019-12074-Z REMARK 1 REFERENCE 2 REMARK 1 AUTH C.DE CHIARA,M.HOMSAK,G.A.PROSSER,H.L.DOUGLAS,A.GARZA-GARCIA, REMARK 1 AUTH 2 G.KELLY,A.G.PURKISS,E.W.TATE,L.P.S.DE CARVALHO REMARK 1 TITL D-CYCLOSERINE DESTRUCTION BY ALANINE RACEMASE AND THE LIMIT REMARK 1 TITL 2 OF IRREVERSIBLE INHIBITION. REMARK 1 REF NAT CHEM BIOL V. 16 686 2020 REMARK 1 REFN ESSN 1552-4469 REMARK 1 DOI 10.1038/S41589-020-0498-9 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 109449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.0600 - 4.9100 1.00 3776 189 0.1907 0.2068 REMARK 3 2 4.9100 - 3.9000 1.00 3580 190 0.1675 0.1960 REMARK 3 3 3.9000 - 3.4000 1.00 3539 198 0.1960 0.2036 REMARK 3 4 3.4000 - 3.0900 1.00 3541 175 0.2144 0.2393 REMARK 3 5 3.0900 - 2.8700 1.00 3483 190 0.2202 0.2395 REMARK 3 6 2.8700 - 2.7000 1.00 3538 167 0.2117 0.2481 REMARK 3 7 2.7000 - 2.5700 1.00 3477 193 0.2268 0.2508 REMARK 3 8 2.5700 - 2.4500 1.00 3450 199 0.2343 0.2698 REMARK 3 9 2.4500 - 2.3600 1.00 3471 172 0.2459 0.2628 REMARK 3 10 2.3600 - 2.2800 1.00 3439 210 0.2397 0.2950 REMARK 3 11 2.2800 - 2.2100 1.00 3442 184 0.2457 0.3079 REMARK 3 12 2.2100 - 2.1400 1.00 3438 202 0.2539 0.2829 REMARK 3 13 2.1400 - 2.0900 1.00 3453 180 0.2560 0.2984 REMARK 3 14 2.0900 - 2.0400 1.00 3430 202 0.2611 0.3352 REMARK 3 15 2.0400 - 1.9900 1.00 3408 182 0.2713 0.2926 REMARK 3 16 1.9900 - 1.9500 1.00 3478 177 0.2847 0.3319 REMARK 3 17 1.9500 - 1.9100 1.00 3444 189 0.2942 0.3011 REMARK 3 18 1.9100 - 1.8700 1.00 3419 185 0.3201 0.3640 REMARK 3 19 1.8700 - 1.8400 1.00 3455 164 0.3091 0.3287 REMARK 3 20 1.8400 - 1.8100 1.00 3423 171 0.3054 0.3200 REMARK 3 21 1.8100 - 1.7800 1.00 3475 188 0.2901 0.3233 REMARK 3 22 1.7800 - 1.7500 1.00 3352 202 0.2921 0.3268 REMARK 3 23 1.7500 - 1.7300 1.00 3450 188 0.2955 0.3281 REMARK 3 24 1.7300 - 1.7000 1.00 3397 179 0.2936 0.3255 REMARK 3 25 1.7000 - 1.6800 1.00 3461 177 0.3009 0.3210 REMARK 3 26 1.6800 - 1.6600 1.00 3386 186 0.3090 0.3543 REMARK 3 27 1.6600 - 1.6400 1.00 3435 167 0.3261 0.3457 REMARK 3 28 1.6400 - 1.6200 1.00 3448 175 0.3105 0.3304 REMARK 3 29 1.6200 - 1.6000 1.00 3422 171 0.3608 0.3762 REMARK 3 30 1.6000 - 1.5800 1.00 3386 201 0.3868 0.4239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.231 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.598 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5351 REMARK 3 ANGLE : 1.032 7279 REMARK 3 CHIRALITY : 0.057 854 REMARK 3 PLANARITY : 0.009 955 REMARK 3 DIHEDRAL : 8.276 796 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7702 1.2947 7.9241 REMARK 3 T TENSOR REMARK 3 T11: 0.3282 T22: 0.3681 REMARK 3 T33: 0.3432 T12: 0.2302 REMARK 3 T13: -0.1054 T23: -0.0821 REMARK 3 L TENSOR REMARK 3 L11: 0.4152 L22: 1.5758 REMARK 3 L33: 1.3056 L12: -0.0276 REMARK 3 L13: 0.4076 L23: 0.3293 REMARK 3 S TENSOR REMARK 3 S11: 0.2641 S12: 0.2445 S13: -0.1104 REMARK 3 S21: -0.0728 S22: -0.2227 S23: 0.1719 REMARK 3 S31: 0.3334 S32: 0.5092 S33: -0.0218 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.7142 18.9418 12.1482 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.8833 REMARK 3 T33: 0.3184 T12: -0.0310 REMARK 3 T13: 0.0344 T23: 0.1153 REMARK 3 L TENSOR REMARK 3 L11: 0.7965 L22: 0.4039 REMARK 3 L33: 1.2254 L12: 0.0377 REMARK 3 L13: 0.5524 L23: -0.5351 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: 0.4076 S13: -0.0401 REMARK 3 S21: -0.1696 S22: -0.2170 S23: -0.1867 REMARK 3 S31: -0.1406 S32: 1.0084 S33: 0.0630 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109449 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 47.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SCZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM MES BUFFER PH 6.2, 150 REMARK 280 MM CACL, 9% (V/V) PEG SMEAR BROAD, 2% (V/V) GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.88000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 82.66000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 82.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.44000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 82.66000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 82.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.32000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 82.66000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.66000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.44000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 82.66000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.66000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.32000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.88000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 ASN A 141 REMARK 465 ARG A 142 REMARK 465 TYR A 177 REMARK 465 ALA A 178 REMARK 465 ASP A 179 REMARK 465 LYS A 180 REMARK 465 PRO A 181 REMARK 465 ASP A 182 REMARK 465 ASN A 385 REMARK 465 ARG A 386 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 HIS B 2 REMARK 465 MET B 3 REMARK 465 THR B 4 REMARK 465 PRO B 5 REMARK 465 ILE B 6 REMARK 465 SER B 7 REMARK 465 GLN B 8 REMARK 465 THR B 9 REMARK 465 PRO B 10 REMARK 465 GLY B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 ILE B 265 REMARK 465 ARG B 266 REMARK 465 ALA B 267 REMARK 465 GLY B 268 REMARK 465 GLU B 269 REMARK 465 GLY B 270 REMARK 465 VAL B 271 REMARK 465 SER B 272 REMARK 465 TYR B 273 REMARK 465 GLY B 274 REMARK 465 HIS B 275 REMARK 465 THR B 276 REMARK 465 TRP B 277 REMARK 465 ILE B 278 REMARK 465 ALA B 279 REMARK 465 PRO B 280 REMARK 465 ARG B 281 REMARK 465 ASP B 282 REMARK 465 PRO B 330 REMARK 465 GLY B 331 REMARK 465 PRO B 332 REMARK 465 LEU B 333 REMARK 465 GLU B 384 REMARK 465 ASN B 385 REMARK 465 ARG B 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 12 CG CD1 CD2 REMARK 470 ARG A 114 NE CZ NH1 NH2 REMARK 470 HIS A 121 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 135 CD CE NZ REMARK 470 LEU A 140 CG CD1 CD2 REMARK 470 VAL A 176 CG1 CG2 REMARK 470 ILE A 185 CG1 CG2 CD1 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 MET B 17 CG SD CE REMARK 470 HIS B 36 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 142 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 168 CD1 CD2 REMARK 470 ASP B 182 CG OD1 OD2 REMARK 470 GLN B 191 CG CD OE1 NE2 REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 ARG B 311 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 314 CG CD REMARK 470 ILE B 348 CG1 CG2 CD1 REMARK 470 ARG B 381 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 84 O HOH B 501 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 126 OG SER B 184 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 226 -122.17 -98.97 REMARK 500 SER A 272 174.38 70.02 REMARK 500 PRO A 289 48.37 -90.49 REMARK 500 THR A 363 -154.30 -133.66 REMARK 500 LLP B 44 164.81 -47.43 REMARK 500 ARG B 142 -94.72 -94.38 REMARK 500 ASP B 179 19.92 -149.72 REMARK 500 PHE B 226 -124.50 -98.88 REMARK 500 PHE B 297 126.13 -38.79 REMARK 500 THR B 363 -150.79 -139.72 REMARK 500 ARG B 373 -166.94 -167.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8B8H RELATED DB: PDB REMARK 900 8B8H CONTAINS THE SAME PROTEIN INHIBITED BY D-CYCLOSERINE (DCS) DBREF 8AHW A 3 386 UNP P9WQA9 ALR_MYCTU 3 386 DBREF 8AHW B 3 386 UNP P9WQA9 ALR_MYCTU 3 386 SEQADV 8AHW GLY A 0 UNP P9WQA9 EXPRESSION TAG SEQADV 8AHW SER A 1 UNP P9WQA9 EXPRESSION TAG SEQADV 8AHW HIS A 2 UNP P9WQA9 EXPRESSION TAG SEQADV 8AHW ASN A 322 UNP P9WQA9 ASP 322 ENGINEERED MUTATION SEQADV 8AHW GLY B 0 UNP P9WQA9 EXPRESSION TAG SEQADV 8AHW SER B 1 UNP P9WQA9 EXPRESSION TAG SEQADV 8AHW HIS B 2 UNP P9WQA9 EXPRESSION TAG SEQADV 8AHW ASN B 322 UNP P9WQA9 ASP 322 ENGINEERED MUTATION SEQRES 1 A 387 GLY SER HIS MET THR PRO ILE SER GLN THR PRO GLY LEU SEQRES 2 A 387 LEU ALA GLU ALA MET VAL ASP LEU GLY ALA ILE GLU HIS SEQRES 3 A 387 ASN VAL ARG VAL LEU ARG GLU HIS ALA GLY HIS ALA GLN SEQRES 4 A 387 LEU MET ALA VAL VAL LLP ALA ASP GLY TYR GLY HIS GLY SEQRES 5 A 387 ALA THR ARG VAL ALA GLN THR ALA LEU GLY ALA GLY ALA SEQRES 6 A 387 ALA GLU LEU GLY VAL ALA THR VAL ASP GLU ALA LEU ALA SEQRES 7 A 387 LEU ARG ALA ASP GLY ILE THR ALA PRO VAL LEU ALA TRP SEQRES 8 A 387 LEU HIS PRO PRO GLY ILE ASP PHE GLY PRO ALA LEU LEU SEQRES 9 A 387 ALA ASP VAL GLN VAL ALA VAL SER SER LEU ARG GLN LEU SEQRES 10 A 387 ASP GLU LEU LEU HIS ALA VAL ARG ARG THR GLY ARG THR SEQRES 11 A 387 ALA THR VAL THR VAL LYS VAL ASP THR GLY LEU ASN ARG SEQRES 12 A 387 ASN GLY VAL GLY PRO ALA GLN PHE PRO ALA MET LEU THR SEQRES 13 A 387 ALA LEU ARG GLN ALA MET ALA GLU ASP ALA VAL ARG LEU SEQRES 14 A 387 ARG GLY LEU MET SER HIS MET VAL TYR ALA ASP LYS PRO SEQRES 15 A 387 ASP ASP SER ILE ASN ASP VAL GLN ALA GLN ARG PHE THR SEQRES 16 A 387 ALA PHE LEU ALA GLN ALA ARG GLU GLN GLY VAL ARG PHE SEQRES 17 A 387 GLU VAL ALA HIS LEU SER ASN SER SER ALA THR MET ALA SEQRES 18 A 387 ARG PRO ASP LEU THR PHE ASP LEU VAL ARG PRO GLY ILE SEQRES 19 A 387 ALA VAL TYR GLY LEU SER PRO VAL PRO ALA LEU GLY ASP SEQRES 20 A 387 MET GLY LEU VAL PRO ALA MET THR VAL LYS CYS ALA VAL SEQRES 21 A 387 ALA LEU VAL LYS SER ILE ARG ALA GLY GLU GLY VAL SER SEQRES 22 A 387 TYR GLY HIS THR TRP ILE ALA PRO ARG ASP THR ASN LEU SEQRES 23 A 387 ALA LEU LEU PRO ILE GLY TYR ALA ASP GLY VAL PHE ARG SEQRES 24 A 387 SER LEU GLY GLY ARG LEU GLU VAL LEU ILE ASN GLY ARG SEQRES 25 A 387 ARG CYS PRO GLY VAL GLY ARG ILE CYS MET ASN GLN PHE SEQRES 26 A 387 MET VAL ASP LEU GLY PRO GLY PRO LEU ASP VAL ALA GLU SEQRES 27 A 387 GLY ASP GLU ALA ILE LEU PHE GLY PRO GLY ILE ARG GLY SEQRES 28 A 387 GLU PRO THR ALA GLN ASP TRP ALA ASP LEU VAL GLY THR SEQRES 29 A 387 ILE HIS TYR GLU VAL VAL THR SER PRO ARG GLY ARG ILE SEQRES 30 A 387 THR ARG THR TYR ARG GLU ALA GLU ASN ARG SEQRES 1 B 387 GLY SER HIS MET THR PRO ILE SER GLN THR PRO GLY LEU SEQRES 2 B 387 LEU ALA GLU ALA MET VAL ASP LEU GLY ALA ILE GLU HIS SEQRES 3 B 387 ASN VAL ARG VAL LEU ARG GLU HIS ALA GLY HIS ALA GLN SEQRES 4 B 387 LEU MET ALA VAL VAL LLP ALA ASP GLY TYR GLY HIS GLY SEQRES 5 B 387 ALA THR ARG VAL ALA GLN THR ALA LEU GLY ALA GLY ALA SEQRES 6 B 387 ALA GLU LEU GLY VAL ALA THR VAL ASP GLU ALA LEU ALA SEQRES 7 B 387 LEU ARG ALA ASP GLY ILE THR ALA PRO VAL LEU ALA TRP SEQRES 8 B 387 LEU HIS PRO PRO GLY ILE ASP PHE GLY PRO ALA LEU LEU SEQRES 9 B 387 ALA ASP VAL GLN VAL ALA VAL SER SER LEU ARG GLN LEU SEQRES 10 B 387 ASP GLU LEU LEU HIS ALA VAL ARG ARG THR GLY ARG THR SEQRES 11 B 387 ALA THR VAL THR VAL LYS VAL ASP THR GLY LEU ASN ARG SEQRES 12 B 387 ASN GLY VAL GLY PRO ALA GLN PHE PRO ALA MET LEU THR SEQRES 13 B 387 ALA LEU ARG GLN ALA MET ALA GLU ASP ALA VAL ARG LEU SEQRES 14 B 387 ARG GLY LEU MET SER HIS MET VAL TYR ALA ASP LYS PRO SEQRES 15 B 387 ASP ASP SER ILE ASN ASP VAL GLN ALA GLN ARG PHE THR SEQRES 16 B 387 ALA PHE LEU ALA GLN ALA ARG GLU GLN GLY VAL ARG PHE SEQRES 17 B 387 GLU VAL ALA HIS LEU SER ASN SER SER ALA THR MET ALA SEQRES 18 B 387 ARG PRO ASP LEU THR PHE ASP LEU VAL ARG PRO GLY ILE SEQRES 19 B 387 ALA VAL TYR GLY LEU SER PRO VAL PRO ALA LEU GLY ASP SEQRES 20 B 387 MET GLY LEU VAL PRO ALA MET THR VAL LYS CYS ALA VAL SEQRES 21 B 387 ALA LEU VAL LYS SER ILE ARG ALA GLY GLU GLY VAL SER SEQRES 22 B 387 TYR GLY HIS THR TRP ILE ALA PRO ARG ASP THR ASN LEU SEQRES 23 B 387 ALA LEU LEU PRO ILE GLY TYR ALA ASP GLY VAL PHE ARG SEQRES 24 B 387 SER LEU GLY GLY ARG LEU GLU VAL LEU ILE ASN GLY ARG SEQRES 25 B 387 ARG CYS PRO GLY VAL GLY ARG ILE CYS MET ASN GLN PHE SEQRES 26 B 387 MET VAL ASP LEU GLY PRO GLY PRO LEU ASP VAL ALA GLU SEQRES 27 B 387 GLY ASP GLU ALA ILE LEU PHE GLY PRO GLY ILE ARG GLY SEQRES 28 B 387 GLU PRO THR ALA GLN ASP TRP ALA ASP LEU VAL GLY THR SEQRES 29 B 387 ILE HIS TYR GLU VAL VAL THR SER PRO ARG GLY ARG ILE SEQRES 30 B 387 THR ARG THR TYR ARG GLU ALA GLU ASN ARG MODRES 8AHW LLP A 44 LYS MODIFIED RESIDUE MODRES 8AHW LLP B 44 LYS MODIFIED RESIDUE HET LLP A 44 41 HET LLP B 44 41 HET GOL A 401 13 HET EDO A 402 10 HET EDO A 403 10 HET EDO B 401 10 HET EDO B 402 10 HET EDO B 403 10 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 GOL C3 H8 O3 FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *281(H2 O) HELIX 1 AA1 LEU A 20 GLY A 35 1 16 HELIX 2 AA2 VAL A 43 GLY A 49 1 7 HELIX 3 AA3 GLY A 51 ALA A 62 1 12 HELIX 4 AA4 THR A 71 ASP A 81 1 11 HELIX 5 AA5 PHE A 98 ALA A 104 1 7 HELIX 6 AA6 SER A 112 GLY A 127 1 16 HELIX 7 AA7 GLN A 149 GLU A 163 1 15 HELIX 8 AA8 SER A 184 GLN A 203 1 20 HELIX 9 AA9 ASN A 214 ARG A 221 1 8 HELIX 10 AB1 PRO A 222 THR A 225 5 4 HELIX 11 AB2 GLY A 232 GLY A 237 5 6 HELIX 12 AB3 VAL A 241 GLY A 245 5 5 HELIX 13 AB4 SER A 272 THR A 276 5 5 HELIX 14 AB5 GLY A 291 GLY A 295 5 5 HELIX 15 AB6 PHE A 297 GLY A 301 5 5 HELIX 16 AB7 THR A 353 GLY A 362 1 10 HELIX 17 AB8 ILE A 364 THR A 370 1 7 HELIX 18 AB9 LEU B 20 GLY B 35 1 16 HELIX 19 AC1 VAL B 43 GLY B 49 1 7 HELIX 20 AC2 GLY B 51 ALA B 62 1 12 HELIX 21 AC3 THR B 71 ASP B 81 1 11 HELIX 22 AC4 PHE B 98 ALA B 104 1 7 HELIX 23 AC5 SER B 112 GLY B 127 1 16 HELIX 24 AC6 GLN B 149 GLU B 163 1 15 HELIX 25 AC7 ASP B 183 GLN B 203 1 21 HELIX 26 AC8 ASN B 214 ARG B 221 1 8 HELIX 27 AC9 PRO B 222 THR B 225 5 4 HELIX 28 AD1 GLY B 232 GLY B 237 5 6 HELIX 29 AD2 VAL B 241 GLY B 245 5 5 HELIX 30 AD3 GLY B 291 GLY B 295 5 5 HELIX 31 AD4 PHE B 297 GLY B 301 5 5 HELIX 32 AD5 THR B 353 GLY B 362 1 10 HELIX 33 AD6 ILE B 364 THR B 370 1 7 SHEET 1 AA1 9 LEU A 261 ILE A 265 0 SHEET 2 AA1 9 THR A 283 LEU A 288 -1 O LEU A 285 N LYS A 263 SHEET 3 AA1 9 PHE A 324 GLY A 329 -1 O PHE A 324 N LEU A 288 SHEET 4 AA1 9 ARG A 311 VAL A 316 -1 N PRO A 314 O ASP A 327 SHEET 5 AA1 9 GLU A 305 ILE A 308 -1 N ILE A 308 O ARG A 311 SHEET 6 AA1 9 GLU A 340 PHE A 344 -1 O ILE A 342 N LEU A 307 SHEET 7 AA1 9 MET A 253 ALA A 258 -1 N CYS A 257 O ALA A 341 SHEET 8 AA1 9 ALA A 14 ASP A 19 -1 N GLU A 15 O LYS A 256 SHEET 9 AA1 9 ILE A 376 ARG A 381 1 O THR A 379 N VAL A 18 SHEET 1 AA2 8 VAL A 209 HIS A 211 0 SHEET 2 AA2 8 VAL A 166 MET A 172 1 N LEU A 171 O HIS A 211 SHEET 3 AA2 8 ALA A 130 LYS A 135 1 N ALA A 130 O ARG A 167 SHEET 4 AA2 8 GLN A 107 VAL A 110 1 N VAL A 110 O THR A 133 SHEET 5 AA2 8 VAL A 87 ALA A 89 1 N VAL A 87 O GLN A 107 SHEET 6 AA2 8 GLU A 66 VAL A 69 1 N VAL A 69 O LEU A 88 SHEET 7 AA2 8 GLN A 38 VAL A 42 1 N ALA A 41 O GLY A 68 SHEET 8 AA2 8 LEU A 228 VAL A 229 1 O VAL A 229 N MET A 40 SHEET 1 AA3 2 GLY A 270 VAL A 271 0 SHEET 2 AA3 2 TRP A 277 ILE A 278 -1 O TRP A 277 N VAL A 271 SHEET 1 AA4 9 LEU B 261 LYS B 263 0 SHEET 2 AA4 9 ASN B 284 LEU B 288 -1 O LEU B 285 N LYS B 263 SHEET 3 AA4 9 PHE B 324 GLY B 329 -1 O LEU B 328 N ASN B 284 SHEET 4 AA4 9 ARG B 311 VAL B 316 -1 N PRO B 314 O ASP B 327 SHEET 5 AA4 9 GLU B 305 ILE B 308 -1 N VAL B 306 O CYS B 313 SHEET 6 AA4 9 GLU B 340 PHE B 344 -1 O ILE B 342 N LEU B 307 SHEET 7 AA4 9 MET B 253 ALA B 258 -1 N CYS B 257 O ALA B 341 SHEET 8 AA4 9 GLU B 15 ASP B 19 -1 N GLU B 15 O LYS B 256 SHEET 9 AA4 9 THR B 377 ARG B 381 1 O ARG B 381 N VAL B 18 SHEET 1 AA5 8 VAL B 209 HIS B 211 0 SHEET 2 AA5 8 VAL B 166 MET B 172 1 N ARG B 169 O VAL B 209 SHEET 3 AA5 8 ALA B 130 LYS B 135 1 N ALA B 130 O ARG B 167 SHEET 4 AA5 8 GLN B 107 VAL B 110 1 N VAL B 110 O LYS B 135 SHEET 5 AA5 8 VAL B 87 ALA B 89 1 N VAL B 87 O GLN B 107 SHEET 6 AA5 8 GLU B 66 VAL B 69 1 N VAL B 69 O LEU B 88 SHEET 7 AA5 8 GLN B 38 VAL B 42 1 N ALA B 41 O GLY B 68 SHEET 8 AA5 8 LEU B 228 VAL B 229 1 O VAL B 229 N MET B 40 LINK C VAL A 43 N LLP A 44 1555 1555 1.33 LINK C LLP A 44 N ALA A 45 1555 1555 1.34 LINK C VAL B 43 N LLP B 44 1555 1555 1.33 LINK C LLP B 44 N ALA B 45 1555 1555 1.34 CRYST1 165.320 165.320 57.760 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006049 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017313 0.00000