HEADER STRUCTURAL PROTEIN 26-JUL-22 8AIF TITLE TAPA ACTS AS SPECIFIC CHAPERONE IN TASA NON-AMYLOID FILAMENT FORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: YQXM PROTEIN REQUIRED FOR LOCALIZATION OF TASA TO COMPND 3 EXTRACELLULAR MATRIX; COMPND 4 CHAIN: A, B, C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: B4417_0967; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACILLUS SUBTILIS, BIOFILM, TASA, TAPA/YQXM, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ROSKE,U.HEINEMANN REVDAT 3 07-FEB-24 8AIF 1 REMARK REVDAT 2 26-APR-23 8AIF 1 JRNL REVDAT 1 12-APR-23 8AIF 0 JRNL AUTH Y.ROSKE,F.LINDEMANN,A.DIEHL,N.CREMER,V.A.HIGMAN,B.SCHLEGEL, JRNL AUTH 2 M.LEIDERT,K.DRILLER,K.TURGAY,P.SCHMIEDER,U.HEINEMANN, JRNL AUTH 3 H.OSCHKINAT JRNL TITL TAPA ACTS AS SPECIFIC CHAPERONE IN TASA FILAMENT FORMATION JRNL TITL 2 BY STRAND COMPLEMENTATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 70120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 37068239 JRNL DOI 10.1073/PNAS.2217070120 REMARK 2 REMARK 2 RESOLUTION. 1.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 151026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10833 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2859 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 743 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : 1.94000 REMARK 3 B33 (A**2) : -2.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.028 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3067 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2945 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4149 ; 1.655 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6887 ; 1.420 ; 1.598 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 7.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;28.906 ;23.971 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 598 ;13.137 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3404 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 662 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6012 ; 4.467 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 72 A 189 4 REMARK 3 1 C 72 C 189 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1735 ; 0.950 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1735 ; 7.070 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5780 -3.0798 -6.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: 0.0004 REMARK 3 T33: 0.0313 T12: -0.0001 REMARK 3 T13: -0.0006 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0302 REMARK 3 L33: 0.0202 L12: -0.0044 REMARK 3 L13: 0.0071 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0008 S13: 0.0015 REMARK 3 S21: 0.0002 S22: 0.0007 S23: 0.0004 REMARK 3 S31: 0.0035 S32: 0.0023 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2988 -13.2472 -38.0640 REMARK 3 T TENSOR REMARK 3 T11: 0.0068 T22: 0.0020 REMARK 3 T33: 0.0314 T12: 0.0002 REMARK 3 T13: 0.0006 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0099 L22: 0.0058 REMARK 3 L33: 0.0234 L12: -0.0039 REMARK 3 L13: 0.0118 L23: -0.0106 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0000 S13: -0.0008 REMARK 3 S21: 0.0010 S22: 0.0015 S23: -0.0009 REMARK 3 S31: -0.0001 S32: -0.0029 S33: -0.0024 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 71 C 188 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9676 14.3498 -19.9219 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0010 REMARK 3 T33: 0.0338 T12: -0.0003 REMARK 3 T13: 0.0002 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0399 REMARK 3 L33: 0.0080 L12: -0.0002 REMARK 3 L13: -0.0025 L23: -0.0094 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0003 S13: 0.0022 REMARK 3 S21: 0.0028 S22: -0.0041 S23: -0.0007 REMARK 3 S31: -0.0001 S32: 0.0018 S33: 0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8AIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 153127 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.070 REMARK 200 RESOLUTION RANGE LOW (A) : 38.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.530 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6HQC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG3350, 0.35M LINO3, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.59950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.88150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.46800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.88150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.59950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.46800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 71 REMARK 465 GLU A 190 REMARK 465 ASP C 189 REMARK 465 GLU C 190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 LYS C 109 CD CE NZ REMARK 470 LYS C 152 CD CE NZ REMARK 470 LYS C 153 CD CE NZ REMARK 470 LYS C 187 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 411 O HOH B 466 1.51 REMARK 500 NZ LYS A 128 O HOH A 501 1.69 REMARK 500 OD1 ASP C 83 O HOH C 301 1.73 REMARK 500 OD2 ASP A 83 O HOH A 502 1.80 REMARK 500 O HOH A 631 O HOH A 661 1.83 REMARK 500 O HOH A 556 O HOH A 609 1.88 REMARK 500 O HOH B 459 O HOH B 476 1.92 REMARK 500 O HOH B 520 O HOH B 567 1.93 REMARK 500 O HOH B 320 O HOH B 460 1.94 REMARK 500 O HOH A 658 O HOH C 489 1.95 REMARK 500 O HOH B 301 O HOH B 356 1.95 REMARK 500 CE1 HIS C 80 O HOH C 303 1.95 REMARK 500 O HOH B 461 O HOH B 476 1.96 REMARK 500 OG SER C 175 O HOH C 302 1.98 REMARK 500 O HOH A 711 O HOH A 721 1.98 REMARK 500 O HOH C 303 O HOH C 341 1.98 REMARK 500 O HOH A 511 O HOH A 666 1.99 REMARK 500 O HOH B 395 O HOH B 485 2.00 REMARK 500 O HOH A 647 O HOH A 706 2.06 REMARK 500 OD2 ASP C 78 O HOH C 303 2.07 REMARK 500 O HOH B 333 O HOH B 478 2.09 REMARK 500 O HOH C 302 O HOH C 361 2.11 REMARK 500 O HOH A 666 O HOH A 714 2.12 REMARK 500 O HOH B 301 O HOH B 476 2.12 REMARK 500 O HOH A 580 O HOH A 632 2.12 REMARK 500 O HOH C 424 O HOH C 457 2.12 REMARK 500 O HOH A 657 O HOH C 402 2.13 REMARK 500 O HOH A 736 O HOH A 749 2.14 REMARK 500 O HOH B 485 O HOH B 559 2.14 REMARK 500 O HOH B 348 O HOH B 416 2.14 REMARK 500 O HOH B 495 O HOH B 566 2.16 REMARK 500 O HOH C 339 O HOH C 391 2.18 REMARK 500 O HOH B 320 O HOH B 366 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 393 O HOH B 564 3544 1.85 REMARK 500 O HOH B 327 O HOH C 313 3644 1.87 REMARK 500 O HOH B 304 O HOH B 375 1655 1.91 REMARK 500 O HOH B 448 O HOH C 512 3544 1.98 REMARK 500 NZ LYS B 153 O HOH B 307 3544 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 109 -85.31 -116.96 REMARK 500 LYS A 109 -88.84 -114.23 REMARK 500 SER A 139 -28.31 -149.38 REMARK 500 LYS B 109 -105.66 -115.93 REMARK 500 SER B 139 -27.56 -156.21 REMARK 500 ASP C 78 89.17 -151.01 REMARK 500 LYS C 109 -59.40 -131.32 REMARK 500 SER C 139 -25.11 -152.66 REMARK 500 ASN C 173 24.92 -144.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 753 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 755 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 756 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH B 568 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH B 569 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH C 515 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH C 516 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH C 517 DISTANCE = 6.31 ANGSTROMS DBREF1 8AIF A 71 190 UNP A0A164X7F2_BACIU DBREF2 8AIF A A0A164X7F2 71 190 DBREF1 8AIF B 71 190 UNP A0A164X7F2_BACIU DBREF2 8AIF B A0A164X7F2 71 190 DBREF1 8AIF C 71 190 UNP A0A164X7F2_BACIU DBREF2 8AIF C A0A164X7F2 71 190 SEQRES 1 A 120 ASP LYS ARG TRP ASP GLN SER ASP LEU HIS ILE SER ASP SEQRES 2 A 120 GLN THR ASP THR LYS GLY THR VAL CYS SER PRO PHE ALA SEQRES 3 A 120 LEU PHE ALA VAL LEU GLU ASN THR GLY GLU LYS LEU LYS SEQRES 4 A 120 LYS SER LYS TRP LYS TRP GLU LEU HIS LYS LEU GLU ASN SEQRES 5 A 120 ALA ARG LYS PRO LEU LYS ASP GLY ASN VAL ILE GLU LYS SEQRES 6 A 120 GLY PHE VAL SER ASN GLN ILE GLY ASP SER LEU TYR LYS SEQRES 7 A 120 ILE GLU THR LYS LYS LYS MET LYS PRO GLY ILE TYR ALA SEQRES 8 A 120 PHE LYS VAL TYR LYS PRO ALA GLY TYR PRO ALA ASN GLY SEQRES 9 A 120 SER THR PHE GLU TRP SER GLU PRO MET ARG LEU ALA LYS SEQRES 10 A 120 CYS ASP GLU SEQRES 1 B 120 ASP LYS ARG TRP ASP GLN SER ASP LEU HIS ILE SER ASP SEQRES 2 B 120 GLN THR ASP THR LYS GLY THR VAL CYS SER PRO PHE ALA SEQRES 3 B 120 LEU PHE ALA VAL LEU GLU ASN THR GLY GLU LYS LEU LYS SEQRES 4 B 120 LYS SER LYS TRP LYS TRP GLU LEU HIS LYS LEU GLU ASN SEQRES 5 B 120 ALA ARG LYS PRO LEU LYS ASP GLY ASN VAL ILE GLU LYS SEQRES 6 B 120 GLY PHE VAL SER ASN GLN ILE GLY ASP SER LEU TYR LYS SEQRES 7 B 120 ILE GLU THR LYS LYS LYS MET LYS PRO GLY ILE TYR ALA SEQRES 8 B 120 PHE LYS VAL TYR LYS PRO ALA GLY TYR PRO ALA ASN GLY SEQRES 9 B 120 SER THR PHE GLU TRP SER GLU PRO MET ARG LEU ALA LYS SEQRES 10 B 120 CYS ASP GLU SEQRES 1 C 120 ASP LYS ARG TRP ASP GLN SER ASP LEU HIS ILE SER ASP SEQRES 2 C 120 GLN THR ASP THR LYS GLY THR VAL CYS SER PRO PHE ALA SEQRES 3 C 120 LEU PHE ALA VAL LEU GLU ASN THR GLY GLU LYS LEU LYS SEQRES 4 C 120 LYS SER LYS TRP LYS TRP GLU LEU HIS LYS LEU GLU ASN SEQRES 5 C 120 ALA ARG LYS PRO LEU LYS ASP GLY ASN VAL ILE GLU LYS SEQRES 6 C 120 GLY PHE VAL SER ASN GLN ILE GLY ASP SER LEU TYR LYS SEQRES 7 C 120 ILE GLU THR LYS LYS LYS MET LYS PRO GLY ILE TYR ALA SEQRES 8 C 120 PHE LYS VAL TYR LYS PRO ALA GLY TYR PRO ALA ASN GLY SEQRES 9 C 120 SER THR PHE GLU TRP SER GLU PRO MET ARG LEU ALA LYS SEQRES 10 C 120 CYS ASP GLU HET NO3 A 401 4 HET EDO B 201 4 HET NO3 B 202 4 HET NO3 B 203 4 HET NO3 B 204 4 HET NO3 C 201 4 HET EDO C 202 4 HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NO3 5(N O3 1-) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 11 HOH *743(H2 O) SHEET 1 AA1 4 LEU A 79 GLN A 84 0 SHEET 2 AA1 4 PHE A 98 ASN A 103 -1 O VAL A 100 N SER A 82 SHEET 3 AA1 4 LEU A 146 GLU A 150 -1 O TYR A 147 N LEU A 101 SHEET 4 AA1 4 ASN A 140 GLY A 143 -1 N ILE A 142 O LEU A 146 SHEET 1 AA2 4 ASN A 131 PHE A 137 0 SHEET 2 AA2 4 LYS A 114 LYS A 119 -1 N LEU A 117 O GLU A 134 SHEET 3 AA2 4 GLY A 158 TYR A 165 -1 O TYR A 165 N LYS A 114 SHEET 4 AA2 4 PHE A 177 TRP A 179 -1 O GLU A 178 N VAL A 164 SHEET 1 AA3 4 ASN A 131 PHE A 137 0 SHEET 2 AA3 4 LYS A 114 LYS A 119 -1 N LEU A 117 O GLU A 134 SHEET 3 AA3 4 GLY A 158 TYR A 165 -1 O TYR A 165 N LYS A 114 SHEET 4 AA3 4 MET A 183 LEU A 185 -1 O MET A 183 N TYR A 160 SHEET 1 AA4 4 LEU B 79 GLN B 84 0 SHEET 2 AA4 4 PHE B 98 ASN B 103 -1 O VAL B 100 N SER B 82 SHEET 3 AA4 4 LEU B 146 GLU B 150 -1 O ILE B 149 N ALA B 99 SHEET 4 AA4 4 ASN B 140 GLY B 143 -1 N ASN B 140 O LYS B 148 SHEET 1 AA5 5 THR B 90 CYS B 92 0 SHEET 2 AA5 5 MET B 183 ALA B 186 1 O ALA B 186 N VAL B 91 SHEET 3 AA5 5 GLY B 158 TYR B 165 -1 N GLY B 158 O LEU B 185 SHEET 4 AA5 5 LYS B 114 LEU B 120 -1 N LEU B 120 O ILE B 159 SHEET 5 AA5 5 ASN B 131 PHE B 137 -1 O GLU B 134 N LEU B 117 SHEET 1 AA6 4 THR B 90 CYS B 92 0 SHEET 2 AA6 4 MET B 183 ALA B 186 1 O ALA B 186 N VAL B 91 SHEET 3 AA6 4 GLY B 158 TYR B 165 -1 N GLY B 158 O LEU B 185 SHEET 4 AA6 4 PHE B 177 TRP B 179 -1 O GLU B 178 N VAL B 164 SHEET 1 AA7 4 LEU C 79 GLN C 84 0 SHEET 2 AA7 4 PHE C 98 ASN C 103 -1 O VAL C 100 N SER C 82 SHEET 3 AA7 4 LEU C 146 GLU C 150 -1 O ILE C 149 N ALA C 99 SHEET 4 AA7 4 ASN C 140 GLY C 143 -1 N ILE C 142 O LEU C 146 SHEET 1 AA8 4 ASN C 131 PHE C 137 0 SHEET 2 AA8 4 LYS C 114 LEU C 120 -1 N LEU C 117 O GLU C 134 SHEET 3 AA8 4 GLY C 158 TYR C 165 -1 O ALA C 161 N HIS C 118 SHEET 4 AA8 4 PHE C 177 TRP C 179 -1 O GLU C 178 N VAL C 164 SHEET 1 AA9 4 ASN C 131 PHE C 137 0 SHEET 2 AA9 4 LYS C 114 LEU C 120 -1 N LEU C 117 O GLU C 134 SHEET 3 AA9 4 GLY C 158 TYR C 165 -1 O ALA C 161 N HIS C 118 SHEET 4 AA9 4 MET C 183 LEU C 185 -1 O LEU C 185 N GLY C 158 SSBOND 1 CYS A 92 CYS A 188 1555 1555 2.01 SSBOND 2 CYS B 92 CYS B 188 1555 1555 2.03 SSBOND 3 CYS C 92 CYS C 188 1555 1555 2.00 CISPEP 1 SER A 93 PRO A 94 0 -10.30 CISPEP 2 LYS A 125 PRO A 126 0 -4.22 CISPEP 3 SER B 93 PRO B 94 0 -7.07 CISPEP 4 SER B 93 PRO B 94 0 -9.06 CISPEP 5 LYS B 125 PRO B 126 0 -5.01 CISPEP 6 SER C 93 PRO C 94 0 -0.24 CISPEP 7 SER C 93 PRO C 94 0 -1.15 CISPEP 8 LYS C 125 PRO C 126 0 -2.95 CRYST1 39.199 52.936 167.763 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025511 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005961 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.204959 -0.951521 -0.229345 13.36309 1 MTRIX2 2 -0.953645 -0.246889 0.172067 22.05060 1 MTRIX3 2 -0.220348 0.183447 -0.958016 -23.88687 1