HEADER SIGNALING PROTEIN 27-JUL-22 8AJ2 TITLE STRUCTURE OF THE ORDERED CORE OF KNR4 (LOOP 189-217 DELETED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRUCTURED CORE OF KNR4; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: LOOP 189-217 WAS DELETED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_TAXID: 4932; SOURCE 4 GENE: KNR4/SMI1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL-WALL INTEGRITY STRESS RESPONSE BETA-GLUCAN SYNTHESIS, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CAISSO,E.I.M.DONKER,L.MAVEYRAUD,D.ZERBIB REVDAT 2 07-FEB-24 8AJ2 1 REMARK REVDAT 1 26-APR-23 8AJ2 0 JRNL AUTH M.BATISTA,E.I.M.DONKER,C.BON,M.GUILLIEN,A.CAISSO,L.MOUREY, JRNL AUTH 2 J.M.FRANCOIS,L.MAVEYRAUD,D.ZERBIB JRNL TITL THE CONSERVED YEAST PROTEIN KNR4 INVOLVED IN CELL WALL JRNL TITL 2 INTEGRITY IS A MULTI-DOMAIN INTRINSICALLY DISORDERED JRNL TITL 3 PROTEIN. JRNL REF J.MOL.BIOL. V. 435 68048 2023 JRNL REFN ESSN 1089-8638 JRNL PMID 36933821 JRNL DOI 10.1016/J.JMB.2023.168048 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1965 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : 2.29000 REMARK 3 B12 (A**2) : -0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.628 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3584 ; 0.015 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 3100 ; 0.004 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4892 ; 2.286 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7236 ; 0.829 ; 1.556 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 8.111 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ;18.163 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;17.130 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4095 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 721 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): -43.6634 39.1225 0.8434 REMARK 3 T TENSOR REMARK 3 T11: 0.0532 T22: 0.0415 REMARK 3 T33: 0.0280 T12: -0.0159 REMARK 3 T13: -0.0007 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 4.6038 L22: 3.1661 REMARK 3 L33: 2.6629 L12: -1.0010 REMARK 3 L13: 0.1955 L23: 0.1311 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.3935 S13: -0.3585 REMARK 3 S21: -0.1346 S22: 0.0276 S23: 0.0818 REMARK 3 S31: 0.0592 S32: -0.0458 S33: -0.0241 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 243 REMARK 3 ORIGIN FOR THE GROUP (A): -60.6639 65.9588 20.4796 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.1575 REMARK 3 T33: 0.1044 T12: 0.0364 REMARK 3 T13: 0.0524 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 3.5079 L22: 5.8130 REMARK 3 L33: 2.2307 L12: -2.2981 REMARK 3 L13: -0.5910 L23: 1.0197 REMARK 3 S TENSOR REMARK 3 S11: -0.1432 S12: -0.1853 S13: 0.2999 REMARK 3 S21: 0.5590 S22: 0.1965 S23: -0.1616 REMARK 3 S31: -0.0542 S32: 0.1236 S33: -0.0533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8AJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28787 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 1.14300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5J1B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28 %V/V PSB (COMPLEX INGREDIENT) 0.05 REMARK 280 M (NH4)2SO4 (SALT) 0.05 M LISO4 (SALT) 0.1 M BIS-TRIS PROP 8.5 REMARK 280 PH (BUFFER), PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.39133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.19567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.39133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.19567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 MET A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLU A 78 REMARK 465 SER A 79 REMARK 465 MET A 80 REMARK 465 THR A 81 REMARK 465 GLY A 82 REMARK 465 THR A 83 REMARK 465 ASN A 113 REMARK 465 LYS A 114 REMARK 465 ARG A 115 REMARK 465 SER A 116 REMARK 465 ASP A 200 REMARK 465 ASP A 201 REMARK 465 ASN A 202 REMARK 465 ASP A 203 REMARK 465 ASP A 204 REMARK 465 TYR A 205 REMARK 465 PHE A 206 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 ASP A 246 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 465 MET B 7 REMARK 465 SER B 8 REMARK 465 THR B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 THR B 81 REMARK 465 GLY B 82 REMARK 465 ASP B 201 REMARK 465 ASN B 202 REMARK 465 ASP B 203 REMARK 465 ASP B 204 REMARK 465 TYR B 205 REMARK 465 PHE B 206 REMARK 465 SER B 207 REMARK 465 GLY B 208 REMARK 465 HIS B 244 REMARK 465 ARG B 245 REMARK 465 ASP B 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LEU A 77 CG CD1 CD2 REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 LYS A 120 CD CE NZ REMARK 470 GLU A 211 CD OE1 OE2 REMARK 470 LYS A 218 CD CE NZ REMARK 470 ARG A 232 CZ NH1 NH2 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 SER B 79 OG REMARK 470 MET B 80 CG SD CE REMARK 470 LYS B 110 CD CE NZ REMARK 470 ARG B 115 NE CZ NH1 NH2 REMARK 470 LYS B 120 CE NZ REMARK 470 ARG B 168 CD NE CZ NH1 NH2 REMARK 470 GLU B 192 CD OE1 OE2 REMARK 470 ASP B 200 CG OD1 OD2 REMARK 470 LYS B 218 CD CE NZ REMARK 470 GLU B 228 CD OE1 OE2 REMARK 470 ARG B 232 NE CZ NH1 NH2 REMARK 470 GLU B 241 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 67.77 -155.71 REMARK 500 PRO A 43 155.58 -47.53 REMARK 500 ASN A 111 -151.55 -121.83 REMARK 500 PHE A 170 69.50 -110.16 REMARK 500 ASN B 33 77.78 -151.57 REMARK 500 SER B 79 78.45 -69.17 REMARK 500 PRO B 117 -163.67 -71.72 REMARK 500 ALA B 144 29.77 -149.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 23 0.08 SIDE CHAIN REMARK 500 ARG A 168 0.21 SIDE CHAIN REMARK 500 ARG A 215 0.10 SIDE CHAIN REMARK 500 ARG A 233 0.11 SIDE CHAIN REMARK 500 ARG A 242 0.16 SIDE CHAIN REMARK 500 ARG B 23 0.14 SIDE CHAIN REMARK 500 ARG B 215 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J1B RELATED DB: PDB REMARK 900 5J1B CONTAINS KNR4 WITH THE LOOP 189-217 DBREF 8AJ2 A 1 246 PDB 8AJ2 8AJ2 1 246 DBREF 8AJ2 B 1 246 PDB 8AJ2 8AJ2 1 246 SEQRES 1 A 246 GLY PRO LEU GLY SER HIS MET SER THR GLU SER ASN ASP SEQRES 2 A 246 GLY VAL SER GLU THR LEU LEU ALA TRP ARG HIS ILE ASP SEQRES 3 A 246 PHE TRP THR SER GLU HIS ASN PRO ASP LEU ASN ALA THR SEQRES 4 A 246 LEU SER ASP PRO CYS THR GLN ASN ASP ILE THR HIS ALA SEQRES 5 A 246 GLU GLU ASP LEU GLU VAL SER PHE PRO ASN PRO VAL LYS SEQRES 6 A 246 ALA SER PHE LYS ILE HIS ASP GLY GLN GLU ASP LEU GLU SEQRES 7 A 246 SER MET THR GLY THR SER GLY LEU PHE TYR GLY PHE GLN SEQRES 8 A 246 LEU MET THR LEU ASP GLN VAL VAL ALA MET THR GLN ALA SEQRES 9 A 246 TRP ARG ASN VAL ALA LYS ASN LEU ASN LYS ARG SER PRO SEQRES 10 A 246 ASP GLN LYS SER ILE PRO PRO ASN ALA VAL GLN PRO VAL SEQRES 11 A 246 TYR ALA HIS PRO ALA TRP ILE PRO LEU ILE THR ASP ASN SEQRES 12 A 246 ALA GLY ASN HIS ILE GLY VAL ASP LEU ALA PRO GLY PRO SEQRES 13 A 246 ASN GLY LYS TYR ALA GLN ILE ILE THR PHE GLY ARG ASP SEQRES 14 A 246 PHE ASP THR LYS PHE VAL ILE ALA GLU ASN TRP GLY GLU SEQRES 15 A 246 PHE LEU LEU SER PHE ALA ASN ASP LEU GLU ALA GLY ASN SEQRES 16 A 246 TRP TYR LEU VAL ASP ASP ASN ASP ASP TYR PHE SER GLY SEQRES 17 A 246 ASP GLY GLU LEU VAL PHE ARG ASP LYS LYS SER ASN GLY SEQRES 18 A 246 PRO ILE GLN ASP TYR PHE GLU VAL LEU LYS ARG ARG THR SEQRES 19 A 246 TRP ILE LYS TYR GLN LEU GLU ARG PRO HIS ARG ASP SEQRES 1 B 246 GLY PRO LEU GLY SER HIS MET SER THR GLU SER ASN ASP SEQRES 2 B 246 GLY VAL SER GLU THR LEU LEU ALA TRP ARG HIS ILE ASP SEQRES 3 B 246 PHE TRP THR SER GLU HIS ASN PRO ASP LEU ASN ALA THR SEQRES 4 B 246 LEU SER ASP PRO CYS THR GLN ASN ASP ILE THR HIS ALA SEQRES 5 B 246 GLU GLU ASP LEU GLU VAL SER PHE PRO ASN PRO VAL LYS SEQRES 6 B 246 ALA SER PHE LYS ILE HIS ASP GLY GLN GLU ASP LEU GLU SEQRES 7 B 246 SER MET THR GLY THR SER GLY LEU PHE TYR GLY PHE GLN SEQRES 8 B 246 LEU MET THR LEU ASP GLN VAL VAL ALA MET THR GLN ALA SEQRES 9 B 246 TRP ARG ASN VAL ALA LYS ASN LEU ASN LYS ARG SER PRO SEQRES 10 B 246 ASP GLN LYS SER ILE PRO PRO ASN ALA VAL GLN PRO VAL SEQRES 11 B 246 TYR ALA HIS PRO ALA TRP ILE PRO LEU ILE THR ASP ASN SEQRES 12 B 246 ALA GLY ASN HIS ILE GLY VAL ASP LEU ALA PRO GLY PRO SEQRES 13 B 246 ASN GLY LYS TYR ALA GLN ILE ILE THR PHE GLY ARG ASP SEQRES 14 B 246 PHE ASP THR LYS PHE VAL ILE ALA GLU ASN TRP GLY GLU SEQRES 15 B 246 PHE LEU LEU SER PHE ALA ASN ASP LEU GLU ALA GLY ASN SEQRES 16 B 246 TRP TYR LEU VAL ASP ASP ASN ASP ASP TYR PHE SER GLY SEQRES 17 B 246 ASP GLY GLU LEU VAL PHE ARG ASP LYS LYS SER ASN GLY SEQRES 18 B 246 PRO ILE GLN ASP TYR PHE GLU VAL LEU LYS ARG ARG THR SEQRES 19 B 246 TRP ILE LYS TYR GLN LEU GLU ARG PRO HIS ARG ASP FORMUL 3 HOH *69(H2 O) HELIX 1 AA1 GLY A 14 ASN A 33 1 20 HELIX 2 AA2 ASN A 33 THR A 39 1 7 HELIX 3 AA3 THR A 45 GLU A 57 1 13 HELIX 4 AA4 PRO A 61 LYS A 69 1 9 HELIX 5 AA5 THR A 94 LYS A 110 1 17 HELIX 6 AA6 ASN A 179 GLY A 194 1 16 HELIX 7 AA7 ASP A 225 ARG A 242 1 18 HELIX 8 AA8 GLY B 14 ASN B 33 1 20 HELIX 9 AA9 ASN B 33 THR B 39 1 7 HELIX 10 AB1 THR B 45 GLU B 57 1 13 HELIX 11 AB2 PRO B 61 LYS B 69 1 9 HELIX 12 AB3 THR B 94 ARG B 115 1 22 HELIX 13 AB4 ASN B 179 ALA B 193 1 15 HELIX 14 AB5 ASP B 225 LEU B 240 1 16 SHEET 1 AA1 6 LYS A 120 ILE A 122 0 SHEET 2 AA1 6 THR A 172 ALA A 177 1 O LYS A 173 N LYS A 120 SHEET 3 AA1 6 GLN A 162 GLY A 167 -1 N ILE A 163 O ALA A 177 SHEET 4 AA1 6 ASN A 146 ASP A 151 -1 N ASP A 151 O GLN A 162 SHEET 5 AA1 6 TRP A 136 THR A 141 -1 N LEU A 139 O ILE A 148 SHEET 6 AA1 6 GLY A 85 LEU A 92 -1 O GLN A 91 N THR A 141 SHEET 1 AA2 3 TYR A 197 LEU A 198 0 SHEET 2 AA2 3 LEU A 212 ARG A 215 -1 O VAL A 213 N TYR A 197 SHEET 3 AA2 3 ILE A 223 GLN A 224 -1 O GLN A 224 N PHE A 214 SHEET 1 AA3 6 GLN B 91 LEU B 92 0 SHEET 2 AA3 6 TRP B 136 THR B 141 -1 O THR B 141 N GLN B 91 SHEET 3 AA3 6 ASN B 146 ASP B 151 -1 O ILE B 148 N LEU B 139 SHEET 4 AA3 6 GLN B 162 GLY B 167 -1 O GLN B 162 N ASP B 151 SHEET 5 AA3 6 THR B 172 ALA B 177 -1 O ALA B 177 N ILE B 163 SHEET 6 AA3 6 LYS B 120 ILE B 122 1 N LYS B 120 O LYS B 173 SHEET 1 AA4 3 TRP B 196 VAL B 199 0 SHEET 2 AA4 3 GLU B 211 ARG B 215 -1 O VAL B 213 N TYR B 197 SHEET 3 AA4 3 ILE B 223 GLN B 224 -1 O GLN B 224 N PHE B 214 CISPEP 1 ILE A 122 PRO A 123 0 -6.13 CISPEP 2 ILE B 122 PRO B 123 0 -4.28 CRYST1 103.129 103.129 93.587 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009697 0.005598 0.000000 0.00000 SCALE2 0.000000 0.011197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010685 0.00000