HEADER ANTIMICROBIAL PROTEIN 29-JUL-22 8AKJ TITLE ACYL-ENZYME COMPLEX OF CEPHALOTHIN BOUND TO DEACYLATION MUTANT KPC-2 TITLE 2 (E166Q) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC-1; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA, KPC, KPC1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SOLUBL21 KEYWDS ACYL-ENZYME COMPLEX, ANTIBIOTIC RESISTANCE, BETA-LACTAMASE, KEYWDS 2 ANTIBIOTIC, LIGAND, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.TOOKE,P.HINCHLIFFE,J.SPENCER REVDAT 3 07-FEB-24 8AKJ 1 REMARK REVDAT 2 30-AUG-23 8AKJ 1 JRNL REVDAT 1 08-MAR-23 8AKJ 0 JRNL AUTH C.L.TOOKE,P.HINCHLIFFE,M.BEER,K.ZINOVJEV,C.K.COLENSO, JRNL AUTH 2 C.J.SCHOFIELD,A.J.MULHOLLAND,J.SPENCER JRNL TITL TAUTOMER-SPECIFIC DEACYLATION AND OMEGA-LOOP FLEXIBILITY JRNL TITL 2 EXPLAIN THE CARBAPENEM-HYDROLYZING BROAD-SPECTRUM ACTIVITY JRNL TITL 3 OF THE KPC-2 BETA-LACTAMASE. JRNL REF J.AM.CHEM.SOC. V. 145 7166 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 36972204 JRNL DOI 10.1021/JACS.2C12123 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 59287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1680 - 3.7822 1.00 2807 138 0.1493 0.1713 REMARK 3 2 3.7822 - 3.0022 1.00 2667 145 0.1267 0.1506 REMARK 3 3 3.0022 - 2.6227 1.00 2641 138 0.1223 0.1610 REMARK 3 4 2.6227 - 2.3829 1.00 2608 125 0.1182 0.1499 REMARK 3 5 2.3829 - 2.2121 1.00 2584 151 0.1196 0.1471 REMARK 3 6 2.2121 - 2.0817 1.00 2586 128 0.1212 0.1563 REMARK 3 7 2.0817 - 1.9774 0.99 2577 148 0.1280 0.1514 REMARK 3 8 1.9774 - 1.8914 0.99 2570 137 0.1352 0.1903 REMARK 3 9 1.8914 - 1.8185 0.99 2582 109 0.1395 0.1689 REMARK 3 10 1.8185 - 1.7558 0.99 2558 130 0.1454 0.1687 REMARK 3 11 1.7558 - 1.7009 0.99 2556 132 0.1514 0.1735 REMARK 3 12 1.7009 - 1.6523 0.99 2524 133 0.1595 0.2022 REMARK 3 13 1.6523 - 1.6088 0.98 2534 139 0.1696 0.1885 REMARK 3 14 1.6088 - 1.5695 0.98 2507 157 0.1693 0.1726 REMARK 3 15 1.5695 - 1.5338 0.98 2513 137 0.1869 0.2174 REMARK 3 16 1.5338 - 1.5012 0.99 2507 140 0.1936 0.2362 REMARK 3 17 1.5012 - 1.4712 0.98 2494 143 0.2114 0.2324 REMARK 3 18 1.4712 - 1.4434 0.98 2501 137 0.2333 0.2764 REMARK 3 19 1.4434 - 1.4176 0.98 2489 150 0.2456 0.2336 REMARK 3 20 1.4176 - 1.3936 0.98 2495 136 0.2839 0.2987 REMARK 3 21 1.3936 - 1.3711 0.97 2482 152 0.3241 0.2924 REMARK 3 22 1.3711 - 1.3500 0.97 2479 121 0.3622 0.3355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5737 10.3139 -4.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.2629 REMARK 3 T33: 0.0952 T12: -0.0221 REMARK 3 T13: 0.0076 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 4.1979 L22: 6.6331 REMARK 3 L33: 6.3996 L12: 0.4136 REMARK 3 L13: -0.4736 L23: -6.4161 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: 0.5240 S13: -0.1288 REMARK 3 S21: -0.4683 S22: 0.0020 S23: -0.1323 REMARK 3 S31: 0.1898 S32: 0.0093 S33: 0.0783 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0014 18.6227 2.2010 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.1951 REMARK 3 T33: 0.0959 T12: 0.0140 REMARK 3 T13: -0.0061 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.2203 L22: 1.7199 REMARK 3 L33: 1.9406 L12: 1.2798 REMARK 3 L13: -0.1373 L23: -0.1068 REMARK 3 S TENSOR REMARK 3 S11: -0.0825 S12: 0.3546 S13: 0.1962 REMARK 3 S21: -0.1766 S22: 0.1061 S23: 0.0756 REMARK 3 S31: -0.0649 S32: -0.1369 S33: -0.0415 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8956 26.6122 28.9921 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.2183 REMARK 3 T33: 0.1275 T12: 0.0179 REMARK 3 T13: 0.0120 T23: -0.0514 REMARK 3 L TENSOR REMARK 3 L11: 1.5641 L22: 1.6512 REMARK 3 L33: 4.9594 L12: 0.9989 REMARK 3 L13: 2.0262 L23: -0.1124 REMARK 3 S TENSOR REMARK 3 S11: -0.1815 S12: -0.1986 S13: 0.2273 REMARK 3 S21: 0.1587 S22: 0.0011 S23: 0.1724 REMARK 3 S31: -0.5443 S32: -0.0427 S33: 0.1546 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7475 14.3111 34.6445 REMARK 3 T TENSOR REMARK 3 T11: 0.0930 T22: 0.2096 REMARK 3 T33: 0.0801 T12: -0.0243 REMARK 3 T13: -0.0051 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 6.5650 L22: 8.6275 REMARK 3 L33: 2.4771 L12: 2.3467 REMARK 3 L13: 0.9865 L23: 1.2398 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: -0.0984 S13: -0.3718 REMARK 3 S21: 0.0269 S22: 0.0236 S23: -0.0072 REMARK 3 S31: 0.2355 S32: -0.0747 S33: -0.1187 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0121 22.2036 25.7594 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.1622 REMARK 3 T33: 0.0872 T12: -0.0163 REMARK 3 T13: 0.0002 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 5.7257 L22: 0.9238 REMARK 3 L33: 1.5699 L12: -2.1760 REMARK 3 L13: 2.7958 L23: -1.2016 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: -0.2923 S13: 0.0376 REMARK 3 S21: 0.0772 S22: 0.0209 S23: 0.0354 REMARK 3 S31: -0.0747 S32: -0.0669 S33: 0.0236 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1679 19.9398 14.0126 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.1520 REMARK 3 T33: 0.0650 T12: -0.0092 REMARK 3 T13: -0.0014 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.4744 L22: 0.8877 REMARK 3 L33: 0.6283 L12: 0.2799 REMARK 3 L13: -0.1200 L23: -0.0508 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.0095 S13: 0.0663 REMARK 3 S21: 0.0128 S22: -0.0068 S23: -0.0395 REMARK 3 S31: -0.0472 S32: 0.0297 S33: -0.0085 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3187 12.4117 7.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.1766 REMARK 3 T33: 0.0434 T12: -0.0061 REMARK 3 T13: -0.0072 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 5.2055 L22: 7.1245 REMARK 3 L33: 1.2434 L12: 5.1588 REMARK 3 L13: -2.2001 L23: -2.5683 REMARK 3 S TENSOR REMARK 3 S11: -0.1023 S12: 0.1742 S13: -0.0774 REMARK 3 S21: -0.1420 S22: 0.0764 S23: -0.1162 REMARK 3 S31: 0.0538 S32: -0.0272 S33: 0.0175 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4415 13.7211 -0.5286 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.2859 REMARK 3 T33: 0.1440 T12: -0.0015 REMARK 3 T13: 0.0275 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.4603 L22: 3.2863 REMARK 3 L33: 1.9924 L12: -0.6201 REMARK 3 L13: 0.1188 L23: -0.9732 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: 0.1610 S13: 0.0105 REMARK 3 S21: -0.2763 S22: -0.1752 S23: -0.4234 REMARK 3 S31: 0.0627 S32: 0.2723 S33: 0.1960 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.899960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59361 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Z21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 5% V/V REMARK 280 ETHANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.25600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.78950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.25600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.78950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 454 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 PRO A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 HIS A 23 REMARK 465 MET A 24 REMARK 465 GLN A 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 96 O HOH A 403 1.59 REMARK 500 OG SER A 70 O9 CEO A 305 2.09 REMARK 500 O HOH A 608 O HOH A 624 2.09 REMARK 500 O HOH A 498 O HOH A 596 2.13 REMARK 500 O HOH A 412 O HOH A 441 2.14 REMARK 500 O4 SO4 A 302 O HOH A 401 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 473 O HOH A 600 4555 1.86 REMARK 500 O HOH A 626 O HOH A 630 3555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -143.00 49.96 REMARK 500 ARG A 220 -125.39 -114.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 647 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 648 DISTANCE = 7.20 ANGSTROMS DBREF 8AKJ A 25 295 UNP Q9F663 BLKPC_KLEPN 25 293 SEQADV 8AKJ MET A 4 UNP Q9F663 INITIATING METHIONINE SEQADV 8AKJ GLY A 5 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ SER A 6 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ SER A 7 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ HIS A 8 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ HIS A 9 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ HIS A 10 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ HIS A 11 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ HIS A 12 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ HIS A 13 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ SER A 14 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ SER A 15 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ GLY A 16 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ LEU A 17 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ VAL A 18 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ PRO A 19 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ ARG A 20 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ GLY A 21 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ SER A 22 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ HIS A 23 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ MET A 24 UNP Q9F663 EXPRESSION TAG SEQADV 8AKJ GLN A 166 UNP Q9F663 GLU 165 ENGINEERED MUTATION SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LEU THR ASN LEU VAL SEQRES 3 A 290 ALA GLU PRO PHE ALA LYS LEU GLU GLN ASP PHE GLY GLY SEQRES 4 A 290 SER ILE GLY VAL TYR ALA MET ASP THR GLY SER GLY ALA SEQRES 5 A 290 THR VAL SER TYR ARG ALA GLU GLU ARG PHE PRO LEU CYS SEQRES 6 A 290 SER SER PHE LYS GLY PHE LEU ALA ALA ALA VAL LEU ALA SEQRES 7 A 290 ARG SER GLN GLN GLN ALA GLY LEU LEU ASP THR PRO ILE SEQRES 8 A 290 ARG TYR GLY LYS ASN ALA LEU VAL PRO TRP SER PRO ILE SEQRES 9 A 290 SER GLU LYS TYR LEU THR THR GLY MET THR VAL ALA GLU SEQRES 10 A 290 LEU SER ALA ALA ALA VAL GLN TYR SER ASP ASN ALA ALA SEQRES 11 A 290 ALA ASN LEU LEU LEU LYS GLU LEU GLY GLY PRO ALA GLY SEQRES 12 A 290 LEU THR ALA PHE MET ARG SER ILE GLY ASP THR THR PHE SEQRES 13 A 290 ARG LEU ASP ARG TRP GLN LEU GLU LEU ASN SER ALA ILE SEQRES 14 A 290 PRO GLY ASP ALA ARG ASP THR SER SER PRO ARG ALA VAL SEQRES 15 A 290 THR GLU SER LEU GLN LYS LEU THR LEU GLY SER ALA LEU SEQRES 16 A 290 ALA ALA PRO GLN ARG GLN GLN PHE VAL ASP TRP LEU LYS SEQRES 17 A 290 GLY ASN THR THR GLY ASN HIS ARG ILE ARG ALA ALA VAL SEQRES 18 A 290 PRO ALA ASP TRP ALA VAL GLY ASP LYS THR GLY THR CYS SEQRES 19 A 290 GLY VAL TYR GLY THR ALA ASN ASP TYR ALA VAL VAL TRP SEQRES 20 A 290 PRO THR GLY ARG ALA PRO ILE VAL LEU ALA VAL TYR THR SEQRES 21 A 290 ARG ALA PRO ASN LYS ASP ASP LYS HIS SER GLU ALA VAL SEQRES 22 A 290 ILE ALA ALA ALA ALA ARG LEU ALA LEU GLU GLY LEU GLY SEQRES 23 A 290 VAL ASN GLY GLN HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET GOL A 304 14 HET CEO A 305 68 HET GOL A 306 14 HET GOL A 307 14 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CEO 5-METHYLENE-2-[2-OXO-1-(2-THIOPHEN-2-YL-ACETYLAMINO)- HETNAM 2 CEO ETHYL]-5,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN CEO HYDROLYZED CEPHALOTHIN FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 CEO C14 H14 N2 O4 S2 FORMUL 9 HOH *248(H2 O) HELIX 1 AA1 PRO A 32 GLY A 41 1 10 HELIX 2 AA2 SER A 71 GLN A 85 1 15 HELIX 3 AA3 GLY A 98 LEU A 102 5 5 HELIX 4 AA4 ILE A 108 LEU A 113 5 6 HELIX 5 AA5 VAL A 119 TYR A 129 1 11 HELIX 6 AA6 ASP A 131 LEU A 142 1 12 HELIX 7 AA7 GLY A 143 ILE A 155 1 13 HELIX 8 AA8 LEU A 167 SER A 171 5 5 HELIX 9 AA9 SER A 182 LEU A 195 1 14 HELIX 10 AB1 ALA A 200 GLY A 213 1 14 HELIX 11 AB2 ARG A 220 VAL A 225 5 6 HELIX 12 AB3 SER A 275 LEU A 290 1 16 SHEET 1 AA1 5 THR A 56 TYR A 60 0 SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60 SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O VAL A 260 N MET A 49 SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N VAL A 250 O ILE A 259 SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N ALA A 230 O TRP A 251 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66 SHEET 1 AA3 2 PRO A 94 ILE A 95 0 SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.03 LINK OG SER A 70 C8 ACEO A 305 1555 1555 1.25 LINK OG SER A 70 C8 BCEO A 305 1555 1555 1.34 CISPEP 1 GLN A 166 LEU A 167 0 6.43 CRYST1 60.512 79.579 55.955 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017872 0.00000