HEADER SIGNALING PROTEIN 08-AUG-22 8AOP TITLE CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN COMPLEX TITLE 2 WITH COMPOUND 14R COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEREBLON ISOFORM 4; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CULT DOMAIN-CONTAINING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1; SOURCE 3 ORGANISM_TAXID: 431944; SOURCE 4 GENE: MGR_0879; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEOLYSIS TARGETING CHIMERA, PROTAC, PROTEIN DEGRADATION, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MAIWALD,C.HEIM,M.D.HARTMANN REVDAT 2 07-FEB-24 8AOP 1 REMARK REVDAT 1 11-JAN-23 8AOP 0 JRNL AUTH M.KRASAVIN,M.ADAMCHIK,A.BUBYREV,C.HEIM,S.MAIWALD, JRNL AUTH 2 D.ZHUKOVSKY,P.ZHMUROV,A.BUNEV,M.D.HARTMANN JRNL TITL SYNTHESIS OF NOVEL GLUTARIMIDE LIGANDS FOR THE E3 LIGASE JRNL TITL 2 SUBSTRATE RECEPTOR CEREBLON (CRBN): INVESTIGATION OF THEIR JRNL TITL 3 BINDING MODE AND ANTIPROLIFERATIVE EFFECTS AGAINST MYELOMA JRNL TITL 4 CELL LINES. JRNL REF EUR.J.MED.CHEM. V. 246 14990 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36476642 JRNL DOI 10.1016/J.EJMECH.2022.114990 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.992 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1551 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28300 REMARK 3 B22 (A**2) : 1.19500 REMARK 3 B33 (A**2) : -1.47800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.009 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2137 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1917 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2880 ; 1.496 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4389 ; 1.232 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 6.677 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;34.335 ;20.541 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;11.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;10.777 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2454 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 566 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 316 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 80 ; 0.221 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 969 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 59 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1044 ; 1.412 ; 3.527 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1043 ; 1.413 ; 3.527 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1295 ; 2.195 ; 5.275 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1296 ; 2.194 ; 5.275 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1093 ; 1.845 ; 3.776 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1094 ; 1.845 ; 3.776 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1584 ; 2.918 ; 5.582 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1585 ; 2.917 ; 5.583 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 122 NULL REMARK 3 1 B 20 B 122 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1854 17.7760 1.8547 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: 0.0438 REMARK 3 T33: 0.1116 T12: 0.0111 REMARK 3 T13: -0.0097 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.1594 L22: 1.9875 REMARK 3 L33: 6.1748 L12: 0.0876 REMARK 3 L13: 1.8614 L23: 1.6612 REMARK 3 S TENSOR REMARK 3 S11: 0.0513 S12: 0.1348 S13: -0.2011 REMARK 3 S21: 0.0007 S22: -0.0307 S23: 0.0927 REMARK 3 S31: 0.1746 S32: 0.0186 S33: -0.0206 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 329 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8168 8.1052 23.9187 REMARK 3 T TENSOR REMARK 3 T11: 0.0268 T22: 0.0466 REMARK 3 T33: 0.0776 T12: -0.0193 REMARK 3 T13: 0.0069 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 3.1501 L22: 5.2546 REMARK 3 L33: 3.7675 L12: -1.9338 REMARK 3 L13: -0.2824 L23: -1.2024 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: -0.1992 S13: -0.0391 REMARK 3 S21: 0.0976 S22: -0.0375 S23: -0.0631 REMARK 3 S31: -0.0387 S32: 0.2540 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 18 C 301 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8500 -1.3404 -6.9129 REMARK 3 T TENSOR REMARK 3 T11: 0.2548 T22: 0.4980 REMARK 3 T33: 0.5014 T12: -0.0916 REMARK 3 T13: 0.0472 T23: -0.1501 REMARK 3 L TENSOR REMARK 3 L11: 5.9617 L22: 4.5070 REMARK 3 L33: 7.4537 L12: -0.2070 REMARK 3 L13: 1.7580 L23: 0.1985 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: 0.2203 S13: -0.5242 REMARK 3 S21: -0.2836 S22: -0.1275 S23: 0.7396 REMARK 3 S31: 0.3931 S32: -0.9550 S33: 0.1743 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.930 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.99 REMARK 200 R MERGE FOR SHELL (I) : 0.97900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4V2Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M AMMONIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.39500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.93050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.59700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.93050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.39500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.59700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLN A 12 REMARK 465 MET A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 GLY A 18 REMARK 465 ASP A 124 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 ASP B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 GLN B 8 REMARK 465 ASN B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 GLN B 12 REMARK 465 MET B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 PRO B 17 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 465 ASP B 124 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 LEU C 3 REMARK 465 ASP C 4 REMARK 465 ALA C 5 REMARK 465 GLY C 6 REMARK 465 GLY C 7 REMARK 465 GLN C 8 REMARK 465 ASN C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLN C 12 REMARK 465 MET C 13 REMARK 465 VAL C 14 REMARK 465 LEU C 15 REMARK 465 ALA C 16 REMARK 465 PRO C 17 REMARK 465 LEU C 37 REMARK 465 LEU C 38 REMARK 465 PRO C 39 REMARK 465 MET C 40 REMARK 465 GLY C 41 REMARK 465 GLY C 42 REMARK 465 ASP C 43 REMARK 465 HIS C 44 REMARK 465 GLU C 45 REMARK 465 HIS C 46 REMARK 465 VAL C 47 REMARK 465 VAL C 48 REMARK 465 PHE C 49 REMARK 465 ASN C 50 REMARK 465 PRO C 51 REMARK 465 ALA C 52 REMARK 465 GLY C 53 REMARK 465 MET C 54 REMARK 465 ILE C 55 REMARK 465 PHE C 56 REMARK 465 ARG C 57 REMARK 465 VAL C 58 REMARK 465 TRP C 59 REMARK 465 GLY C 71 REMARK 465 ALA C 72 REMARK 465 PRO C 73 REMARK 465 SER C 74 REMARK 465 GLY C 75 REMARK 465 GLU C 76 REMARK 465 PHE C 77 REMARK 465 SER C 78 REMARK 465 TRP C 79 REMARK 465 PHE C 80 REMARK 465 LYS C 81 REMARK 465 GLY C 82 REMARK 465 TYR C 83 REMARK 465 ASP C 84 REMARK 465 TRP C 85 REMARK 465 THR C 86 REMARK 465 HIS C 100 REMARK 465 TYR C 101 REMARK 465 GLU C 102 REMARK 465 GLY C 103 REMARK 465 GLY C 104 REMARK 465 SER C 105 REMARK 465 GLN C 106 REMARK 465 PRO C 107 REMARK 465 GLN C 108 REMARK 465 THR C 109 REMARK 465 PHE C 110 REMARK 465 PHE C 111 REMARK 465 GLY C 112 REMARK 465 LEU C 113 REMARK 465 ASP C 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 115 CD CE NZ REMARK 470 ARG B 68 NE CZ NH1 NH2 REMARK 470 ARG C 25 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 33 NE CZ NH1 NH2 REMARK 470 HIS C 96 CG ND1 CD2 CE1 NE2 REMARK 470 TRP C 99 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 99 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP C 99 C TRP C 99 O 0.298 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 20 -9.47 -143.81 REMARK 500 GLN A 106 70.76 48.09 REMARK 500 GLN B 106 70.49 48.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 CYS A 27 SG 112.3 REMARK 620 3 CYS A 90 SG 107.5 99.8 REMARK 620 4 CYS A 93 SG 110.3 114.0 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 24 SG REMARK 620 2 CYS B 27 SG 115.2 REMARK 620 3 CYS B 90 SG 112.2 105.6 REMARK 620 4 CYS B 93 SG 102.5 110.0 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 24 SG REMARK 620 2 CYS C 27 SG 114.9 REMARK 620 3 CYS C 90 SG 108.1 100.4 REMARK 620 4 CYS C 93 SG 107.2 111.2 115.2 REMARK 620 N 1 2 3 DBREF 8AOP A 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8AOP B 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8AOP C 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 SEQRES 1 A 124 MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN MET SEQRES 2 A 124 VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG GLN SEQRES 3 A 124 CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU PRO SEQRES 4 A 124 MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO ALA SEQRES 5 A 124 GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA GLN SEQRES 6 A 124 GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SER SEQRES 7 A 124 TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS GLY SEQRES 8 A 124 GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY GLY SEQRES 9 A 124 SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP ARG SEQRES 10 A 124 LEU ALA GLU GLY PRO ALA ASP SEQRES 1 B 124 MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN MET SEQRES 2 B 124 VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG GLN SEQRES 3 B 124 CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU PRO SEQRES 4 B 124 MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO ALA SEQRES 5 B 124 GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA GLN SEQRES 6 B 124 GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SER SEQRES 7 B 124 TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS GLY SEQRES 8 B 124 GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY GLY SEQRES 9 B 124 SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP ARG SEQRES 10 B 124 LEU ALA GLU GLY PRO ALA ASP SEQRES 1 C 124 MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN MET SEQRES 2 C 124 VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG GLN SEQRES 3 C 124 CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU PRO SEQRES 4 C 124 MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO ALA SEQRES 5 C 124 GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA GLN SEQRES 6 C 124 GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SER SEQRES 7 C 124 TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS GLY SEQRES 8 C 124 GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY GLY SEQRES 9 C 124 SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP ARG SEQRES 10 C 124 LEU ALA GLU GLY PRO ALA ASP HET ZN A 201 1 HET MW6 A 202 17 HET PO4 A 203 5 HET ZN B 201 1 HET MW6 B 202 17 HET PO4 B 203 5 HET ZN C 201 1 HETNAM ZN ZINC ION HETNAM MW6 (3S)-3-[(3-AMINOPHENYL)SULFANYLMETHYL]PIPERIDINE-2,6- HETNAM 2 MW6 DIONE HETNAM PO4 PHOSPHATE ION FORMUL 4 ZN 3(ZN 2+) FORMUL 5 MW6 2(C12 H14 N2 O2 S) FORMUL 6 PO4 2(O4 P 3-) FORMUL 11 HOH *57(H2 O) HELIX 1 AA1 ASP A 35 LEU A 37 5 3 HELIX 2 AA2 PRO A 39 ASP A 43 5 5 HELIX 3 AA3 ASP B 35 LEU B 37 5 3 HELIX 4 AA4 PRO B 39 ASP B 43 5 5 HELIX 5 AA5 ILE C 114 ASP C 116 5 3 SHEET 1 AA1 3 THR A 30 ARG A 33 0 SHEET 2 AA1 3 ILE A 21 CYS A 24 -1 N PHE A 22 O SER A 32 SHEET 3 AA1 3 LEU A 118 GLY A 121 -1 O ALA A 119 N ARG A 23 SHEET 1 AA2 6 GLU A 45 PHE A 49 0 SHEET 2 AA2 6 ILE A 55 PHE A 61 -1 O VAL A 58 N HIS A 46 SHEET 3 AA2 6 PHE A 110 ILE A 114 -1 O LEU A 113 N TRP A 59 SHEET 4 AA2 6 HIS A 96 GLU A 102 -1 N TYR A 101 O PHE A 110 SHEET 5 AA2 6 ASP A 84 CYS A 90 -1 N ASP A 84 O GLU A 102 SHEET 6 AA2 6 LEU A 67 SER A 74 -1 N SER A 74 O TRP A 85 SHEET 1 AA3 3 THR B 30 ARG B 33 0 SHEET 2 AA3 3 ILE B 21 CYS B 24 -1 N PHE B 22 O SER B 32 SHEET 3 AA3 3 LEU B 118 GLY B 121 -1 O ALA B 119 N ARG B 23 SHEET 1 AA4 6 GLU B 45 PHE B 49 0 SHEET 2 AA4 6 ILE B 55 PHE B 61 -1 O VAL B 58 N HIS B 46 SHEET 3 AA4 6 PHE B 110 ILE B 114 -1 O PHE B 111 N PHE B 61 SHEET 4 AA4 6 HIS B 96 GLU B 102 -1 N TYR B 101 O PHE B 110 SHEET 5 AA4 6 ASP B 84 CYS B 90 -1 N ASP B 84 O GLU B 102 SHEET 6 AA4 6 LEU B 67 SER B 74 -1 N SER B 74 O TRP B 85 SHEET 1 AA5 3 THR C 30 ARG C 33 0 SHEET 2 AA5 3 ILE C 21 CYS C 24 -1 N PHE C 22 O SER C 32 SHEET 3 AA5 3 LEU C 118 GLY C 121 -1 O ALA C 119 N ARG C 23 SHEET 1 AA6 3 LEU C 67 ARG C 68 0 SHEET 2 AA6 3 ALA C 88 CYS C 90 -1 O LEU C 89 N ARG C 68 SHEET 3 AA6 3 HIS C 96 GLY C 98 -1 O GLY C 98 N ALA C 88 LINK SG CYS A 24 ZN ZN A 201 1555 1555 2.28 LINK SG CYS A 27 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 90 ZN ZN A 201 1555 1555 2.32 LINK SG CYS A 93 ZN ZN A 201 1555 1555 2.31 LINK SG CYS B 24 ZN ZN B 201 1555 1555 2.36 LINK SG CYS B 27 ZN ZN B 201 1555 1555 2.37 LINK SG CYS B 90 ZN ZN B 201 1555 1555 2.30 LINK SG CYS B 93 ZN ZN B 201 1555 1555 2.37 LINK SG CYS C 24 ZN ZN C 201 1555 1555 2.34 LINK SG CYS C 27 ZN ZN C 201 1555 1555 2.35 LINK SG CYS C 90 ZN ZN C 201 1555 1555 2.35 LINK SG CYS C 93 ZN ZN C 201 1555 1555 2.35 CISPEP 1 GLN A 106 PRO A 107 0 -3.38 CISPEP 2 GLN B 106 PRO B 107 0 -4.98 CRYST1 56.790 59.194 87.861 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017609 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011382 0.00000