HEADER TRANSFERASE 11-AUG-22 8AQ3
TITLE IN SURFO STRUCTURE OF THE MEMBRANE INTEGRAL LIPOPROTEIN N-
TITLE 2 ACYLTRANSFERASE LNT FROM E. COLI IN COMPLEX WITH PE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: APOLIPOPROTEIN N-ACYLTRANSFERASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ALP N-ACYLTRANSFERASE,COPPER HOMEOSTASIS PROTEIN CUTE;
COMPND 5 EC: 2.3.1.-;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12;
SOURCE 3 ORGANISM_TAXID: 83333;
SOURCE 4 STRAIN: K12;
SOURCE 5 GENE: LNT, CUTE, B0657, JW0654;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS LNT, APOLIPOPROTEIN N-ACYLTRANSFERASE, BACTERIAL LIPOPROTEINS.,
KEYWDS 2 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.-Y.HUANG,D.WEICHERT,C.BOLAND,L.SMITHERS,V.OLIERIC,M.WANG,M.CAFFREY
REVDAT 2 07-FEB-24 8AQ3 1 REMARK
REVDAT 1 12-JUL-23 8AQ3 0
JRNL AUTH L.SMITHERS,O.DEGTJARIK,D.WEICHERT,C.Y.HUANG,C.BOLAND,
JRNL AUTH 2 K.BOWEN,A.OLUWOLE,C.LUTOMSKI,C.V.ROBINSON,E.M.SCANLAN,
JRNL AUTH 3 M.WANG,V.OLIERIC,M.SHALEV-BENAMI,M.CAFFREY
JRNL TITL STRUCTURE SNAPSHOTS REVEAL THE MECHANISM OF A BACTERIAL
JRNL TITL 2 MEMBRANE LIPOPROTEIN N -ACYLTRANSFERASE.
JRNL REF SCI ADV V. 9 F5799 2023
JRNL REFN ESSN 2375-2548
JRNL PMID 37390210
JRNL DOI 10.1126/SCIADV.ADF5799
REMARK 2
REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_3494
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.38
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 53762
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.226
REMARK 3 R VALUE (WORKING SET) : 0.225
REMARK 3 FREE R VALUE : 0.240
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990
REMARK 3 FREE R VALUE TEST SET COUNT : 2685
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 43.3760 - 6.3836 0.99 2809 148 0.1933 0.2012
REMARK 3 2 6.3836 - 5.0694 1.00 2740 144 0.1962 0.2317
REMARK 3 3 5.0694 - 4.4293 1.00 2736 144 0.1725 0.1615
REMARK 3 4 4.4293 - 4.0246 1.00 2685 142 0.2107 0.2062
REMARK 3 5 4.0246 - 3.7363 1.00 2709 142 0.2175 0.2440
REMARK 3 6 3.7363 - 3.5161 1.00 2688 142 0.2389 0.2558
REMARK 3 7 3.5161 - 3.3401 1.00 2685 141 0.2247 0.2519
REMARK 3 8 3.3401 - 3.1948 1.00 2687 141 0.2375 0.2673
REMARK 3 9 3.1948 - 3.0718 1.00 2667 141 0.2327 0.2368
REMARK 3 10 3.0718 - 2.9658 1.00 2673 141 0.2556 0.2805
REMARK 3 11 2.9658 - 2.8731 1.00 2683 140 0.2682 0.2848
REMARK 3 12 2.8731 - 2.7910 1.00 2656 140 0.2914 0.3449
REMARK 3 13 2.7910 - 2.7175 1.00 2697 140 0.2981 0.3489
REMARK 3 14 2.7175 - 2.6513 1.00 2665 140 0.2978 0.3060
REMARK 3 15 2.6513 - 2.5910 1.00 2654 140 0.3112 0.3323
REMARK 3 16 2.5910 - 2.5359 1.00 2632 138 0.3282 0.3781
REMARK 3 17 2.5359 - 2.4851 1.00 2709 143 0.3590 0.3638
REMARK 3 18 2.4851 - 2.4382 1.00 2645 139 0.3764 0.4037
REMARK 3 19 2.4382 - 2.3950 0.99 2657 139 0.4023 0.4271
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.120
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.70
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8AQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-22.
REMARK 100 THE DEPOSITION ID IS D_1292124722.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-MAR-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I24
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53802
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.395
REMARK 200 RESOLUTION RANGE LOW (A) : 46.480
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 11.10
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4600
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8
REMARK 200 DATA REDUNDANCY IN SHELL : 11.22
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.880
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5N6L
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 78.66
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.76
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM ACETATE PH 5.0, 50 MM
REMARK 280 MAGNESIUM ACETATE AND 28-36 %(V/V) PEG200, VAPOR DIFFUSION,
REMARK 280 TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.85467
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.42733
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.42733
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.85467
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -19
REMARK 465 GLY A -18
REMARK 465 SER A -17
REMARK 465 SER A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 HIS A -11
REMARK 465 HIS A -10
REMARK 465 SER A -9
REMARK 465 SER A -8
REMARK 465 GLY A -7
REMARK 465 LEU A -6
REMARK 465 VAL A -5
REMARK 465 PRO A -4
REMARK 465 ARG A -3
REMARK 465 GLY A -2
REMARK 465 SER A -1
REMARK 465 HIS A 0
REMARK 465 GLN A 509
REMARK 465 ARG A 510
REMARK 465 ARG A 511
REMARK 465 LYS A 512
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 118 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ILE A 126 -59.99 -123.55
REMARK 500 THR A 144 -13.79 78.78
REMARK 500 PHE A 146 82.33 -157.55
REMARK 500 PRO A 147 42.01 -87.39
REMARK 500 LEU A 149 72.70 62.36
REMARK 500 ARG A 209 -9.45 -59.65
REMARK 500 GLN A 217 78.46 -112.68
REMARK 500 SER A 268 42.60 38.62
REMARK 500 ALA A 323 56.80 -159.51
REMARK 500 PHE A 341 -16.24 71.85
REMARK 500 ASP A 359 44.17 -141.75
REMARK 500 ASN A 378 -3.40 66.13
REMARK 500 ALA A 387 -117.10 44.53
REMARK 500 LEU A 507 51.11 -93.26
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 PG5 A 603
REMARK 610 PG5 A 604
REMARK 610 PG5 A 605
REMARK 610 PG5 A 606
REMARK 610 PG6 A 607
REMARK 610 LMT A 617
REMARK 610 LMT A 618
REMARK 610 LMT A 619
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 6OU A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 6OU A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PG5 A 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PG5 A 604
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PG5 A 605
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PG5 A 606
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 A 607
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 608
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 609
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 610
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 611
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 612
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 613
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 614
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 615
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 616
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 618
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 619
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 6OU A 620
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 621
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 622
REMARK 800
REMARK 800 SITE_IDENTIFIER: AE4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 623
DBREF 8AQ3 A 1 512 UNP P23930 LNT_ECOLI 1 512
SEQADV 8AQ3 MET A -19 UNP P23930 INITIATING METHIONINE
SEQADV 8AQ3 GLY A -18 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 SER A -17 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 SER A -16 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 HIS A -15 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 HIS A -14 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 HIS A -13 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 HIS A -12 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 HIS A -11 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 HIS A -10 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 SER A -9 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 SER A -8 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 GLY A -7 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 LEU A -6 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 VAL A -5 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 PRO A -4 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 ARG A -3 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 GLY A -2 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 SER A -1 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 HIS A 0 UNP P23930 EXPRESSION TAG
SEQADV 8AQ3 ALA A 387 UNP P23930 CYS 387 ENGINEERED MUTATION
SEQRES 1 A 532 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 532 LEU VAL PRO ARG GLY SER HIS MET ALA PHE ALA SER LEU
SEQRES 3 A 532 ILE GLU ARG GLN ARG ILE ARG LEU LEU LEU ALA LEU LEU
SEQRES 4 A 532 PHE GLY ALA CYS GLY THR LEU ALA PHE SER PRO TYR ASP
SEQRES 5 A 532 VAL TRP PRO ALA ALA ILE ILE SER LEU MET GLY LEU GLN
SEQRES 6 A 532 ALA LEU THR PHE ASN ARG ARG PRO LEU GLN SER ALA ALA
SEQRES 7 A 532 ILE GLY PHE CYS TRP GLY PHE GLY LEU PHE GLY SER GLY
SEQRES 8 A 532 ILE ASN TRP VAL TYR VAL SER ILE ALA THR PHE GLY GLY
SEQRES 9 A 532 MET PRO GLY PRO VAL ASN ILE PHE LEU VAL VAL LEU LEU
SEQRES 10 A 532 ALA ALA TYR LEU SER LEU TYR THR GLY LEU PHE ALA GLY
SEQRES 11 A 532 VAL LEU SER ARG LEU TRP PRO LYS THR THR TRP LEU ARG
SEQRES 12 A 532 VAL ALA ILE ALA ALA PRO ALA LEU TRP GLN VAL THR GLU
SEQRES 13 A 532 PHE LEU ARG GLY TRP VAL LEU THR GLY PHE PRO TRP LEU
SEQRES 14 A 532 GLN PHE GLY TYR SER GLN ILE ASP GLY PRO LEU LYS GLY
SEQRES 15 A 532 LEU ALA PRO ILE MET GLY VAL GLU ALA ILE ASN PHE LEU
SEQRES 16 A 532 LEU MET MET VAL SER GLY LEU LEU ALA LEU ALA LEU VAL
SEQRES 17 A 532 LYS ARG ASN TRP ARG PRO LEU VAL VAL ALA VAL VAL LEU
SEQRES 18 A 532 PHE ALA LEU PRO PHE PRO LEU ARG TYR ILE GLN TRP PHE
SEQRES 19 A 532 THR PRO GLN PRO GLU LYS THR ILE GLN VAL SER MET VAL
SEQRES 20 A 532 GLN GLY ASP ILE PRO GLN SER LEU LYS TRP ASP GLU GLY
SEQRES 21 A 532 GLN LEU LEU ASN THR LEU LYS ILE TYR TYR ASN ALA THR
SEQRES 22 A 532 ALA PRO LEU MET GLY LYS SER SER LEU ILE ILE TRP PRO
SEQRES 23 A 532 GLU SER ALA ILE THR ASP LEU GLU ILE ASN GLN GLN PRO
SEQRES 24 A 532 PHE LEU LYS ALA LEU ASP GLY GLU LEU ARG ASP LYS GLY
SEQRES 25 A 532 SER SER LEU VAL THR GLY ILE VAL ASP ALA ARG LEU ASN
SEQRES 26 A 532 LYS GLN ASN ARG TYR ASP THR TYR ASN THR ILE ILE THR
SEQRES 27 A 532 LEU GLY LYS GLY ALA PRO TYR SER TYR GLU SER ALA ASP
SEQRES 28 A 532 ARG TYR ASN LYS ASN HIS LEU VAL PRO PHE GLY GLU PHE
SEQRES 29 A 532 VAL PRO LEU GLU SER ILE LEU ARG PRO LEU ALA PRO PHE
SEQRES 30 A 532 PHE ASP LEU PRO MET SER SER PHE SER ARG GLY PRO TYR
SEQRES 31 A 532 ILE GLN PRO PRO LEU SER ALA ASN GLY ILE GLU LEU THR
SEQRES 32 A 532 ALA ALA ILE ALA TYR GLU ILE ILE LEU GLY GLU GLN VAL
SEQRES 33 A 532 ARG ASP ASN PHE ARG PRO ASP THR ASP TYR LEU LEU THR
SEQRES 34 A 532 ILE SER ASN ASP ALA TRP PHE GLY LYS SER ILE GLY PRO
SEQRES 35 A 532 TRP GLN HIS PHE GLN MET ALA ARG MET ARG ALA LEU GLU
SEQRES 36 A 532 LEU ALA ARG PRO LEU LEU ARG SER THR ASN ASN GLY ILE
SEQRES 37 A 532 THR ALA VAL ILE GLY PRO GLN GLY GLU ILE GLN ALA MET
SEQRES 38 A 532 ILE PRO GLN PHE THR ARG GLU VAL LEU THR THR ASN VAL
SEQRES 39 A 532 THR PRO THR THR GLY LEU THR PRO TYR ALA ARG THR GLY
SEQRES 40 A 532 ASN TRP PRO LEU TRP VAL LEU THR ALA LEU PHE GLY PHE
SEQRES 41 A 532 ALA ALA VAL LEU MET SER LEU ARG GLN ARG ARG LYS
HET 6OU A 601 49
HET 6OU A 602 49
HET PG5 A 603 10
HET PG5 A 604 11
HET PG5 A 605 8
HET PG5 A 606 10
HET PG6 A 607 13
HET TRS A 608 8
HET ACT A 609 4
HET GOL A 610 6
HET GOL A 611 6
HET LMT A 612 35
HET LMT A 613 35
HET GOL A 614 6
HET GOL A 615 6
HET GOL A 616 6
HET LMT A 617 12
HET LMT A 618 12
HET LMT A 619 12
HET 6OU A 620 49
HET CL A 621 1
HET CL A 622 1
HET CL A 623 1
HETNAM 6OU [(2~{R})-1-[2-AZANYLETHOXY(OXIDANYL)PHOSPHORYL]OXY-3-
HETNAM 2 6OU HEXADECANOYLOXY-PROPAN-2-YL] (~{Z})-OCTADEC-9-ENOATE
HETNAM PG5 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-
HETNAM 2 PG6 ETHOXY}-ETHANE
HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HETNAM ACT ACETATE ION
HETNAM GOL GLYCEROL
HETNAM LMT DODECYL-BETA-D-MALTOSIDE
HETNAM CL CHLORIDE ION
HETSYN TRS TRIS BUFFER
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 6OU 3(C39 H76 N O8 P)
FORMUL 4 PG5 4(C8 H18 O4)
FORMUL 8 PG6 C12 H26 O6
FORMUL 9 TRS C4 H12 N O3 1+
FORMUL 10 ACT C2 H3 O2 1-
FORMUL 11 GOL 5(C3 H8 O3)
FORMUL 13 LMT 5(C24 H46 O11)
FORMUL 22 CL 3(CL 1-)
FORMUL 25 HOH *57(H2 O)
HELIX 1 AA1 MET A 1 GLU A 8 1 8
HELIX 2 AA2 ARG A 9 THR A 25 1 17
HELIX 3 AA3 LEU A 26 PHE A 28 5 3
HELIX 4 AA4 TRP A 34 LEU A 47 1 14
HELIX 5 AA5 ARG A 52 ILE A 72 1 21
HELIX 6 AA6 TRP A 74 GLY A 84 1 11
HELIX 7 AA7 PRO A 86 TRP A 116 1 31
HELIX 8 AA8 THR A 120 ILE A 126 1 7
HELIX 9 AA9 ILE A 126 GLY A 140 1 15
HELIX 10 AB1 TRP A 141 GLY A 145 5 5
HELIX 11 AB2 GLN A 150 ILE A 156 5 7
HELIX 12 AB3 LEU A 160 GLY A 162 5 3
HELIX 13 AB4 LEU A 163 GLY A 168 1 6
HELIX 14 AB5 GLY A 168 LYS A 189 1 22
HELIX 15 AB6 ASN A 191 LEU A 204 1 14
HELIX 16 AB7 PHE A 206 ILE A 211 5 6
HELIX 17 AB8 PRO A 218 THR A 221 5 4
HELIX 18 AB9 PRO A 232 TRP A 237 1 6
HELIX 19 AC1 ASP A 238 GLY A 240 5 3
HELIX 20 AC2 GLN A 241 ALA A 254 1 14
HELIX 21 AC3 PRO A 255 MET A 257 5 3
HELIX 22 AC4 GLN A 277 GLY A 292 1 16
HELIX 23 AC5 LEU A 347 ARG A 352 1 6
HELIX 24 AC6 ALA A 355 LEU A 360 5 6
HELIX 25 AC7 TYR A 388 ILE A 391 5 4
HELIX 26 AC8 LEU A 392 PHE A 400 1 9
HELIX 27 AC9 ASP A 413 GLY A 417 5 5
HELIX 28 AD1 ILE A 420 ALA A 437 1 18
HELIX 29 AD2 THR A 481 GLY A 487 1 7
HELIX 30 AD3 ASN A 488 SER A 506 1 19
SHEET 1 AA1 2 THR A 215 PRO A 216 0
SHEET 2 AA1 2 THR A 477 THR A 478 -1 O THR A 478 N THR A 215
SHEET 1 AA2 6 ARG A 332 ASN A 334 0
SHEET 2 AA2 6 TYR A 310 GLY A 320 -1 N ILE A 316 O TYR A 333
SHEET 3 AA2 6 SER A 294 LEU A 304 -1 N ASP A 301 O TYR A 313
SHEET 4 AA2 6 LEU A 262 LEU A 273 1 N TRP A 265 O VAL A 296
SHEET 5 AA2 6 ILE A 222 GLN A 228 1 N VAL A 227 O ILE A 264
SHEET 6 AA2 6 GLU A 468 VAL A 474 -1 O GLU A 468 N GLN A 228
SHEET 1 AA3 6 LEU A 375 ALA A 377 0
SHEET 2 AA3 6 ILE A 380 ILE A 386 -1 O ILE A 380 N ALA A 377
SHEET 3 AA3 6 TYR A 406 SER A 411 1 O LEU A 408 N THR A 383
SHEET 4 AA3 6 LEU A 440 THR A 444 1 O LEU A 441 N THR A 409
SHEET 5 AA3 6 ALA A 450 ILE A 452 -1 O ALA A 450 N ARG A 442
SHEET 6 AA3 6 ILE A 458 MET A 461 -1 O ALA A 460 N VAL A 451
CISPEP 1 SER A 29 PRO A 30 0 8.84
SITE 1 AC1 23 TRP A 74 VAL A 75 SER A 78 ILE A 79
SITE 2 AC1 23 LEU A 143 PHE A 146 LYS A 236 TRP A 237
SITE 3 AC1 23 GLU A 267 SER A 268 LYS A 335 VAL A 339
SITE 4 AC1 23 PRO A 340 PHE A 341 GLY A 342 PRO A 361
SITE 5 AC1 23 MET A 362 ALA A 387 TYR A 388 SER A 411
SITE 6 AC1 23 ASN A 412 ASP A 413 TRP A 415
SITE 1 AC2 18 MET A 1 ALA A 2 ARG A 9 CYS A 23
SITE 2 AC2 18 THR A 25 SER A 29 PRO A 30 TYR A 31
SITE 3 AC2 18 ASP A 32 SER A 70 ASN A 73 LYS A 418
SITE 4 AC2 18 SER A 419 TRP A 423 ARG A 430 ILE A 458
SITE 5 AC2 18 HOH A 702 HOH A 738
SITE 1 AC3 1 ARG A 209
SITE 1 AC4 3 ARG A 485 GOL A 615 GOL A 616
SITE 1 AC5 2 GLY A 258 SER A 261
SITE 1 AC6 2 LEU A 347 GOL A 611
SITE 1 AC7 5 GLU A 8 ARG A 13 LEU A 47 ASN A 50
SITE 2 AC7 5 VAL A 188
SITE 1 AC8 2 TYR A 250 PHE A 280
SITE 1 AC9 1 ARG A 52
SITE 1 AD1 1 GLY A 87
SITE 1 AD2 5 THR A 144 PRO A 346 PG5 A 606 LMT A 613
SITE 2 AD2 5 HOH A 740
SITE 1 AD3 2 ARG A 397 TRP A 489
SITE 1 AD4 4 TRP A 141 LEU A 143 GOL A 611 HOH A 740
SITE 1 AD5 1 HOH A 746
SITE 1 AD6 2 ARG A 485 PG5 A 604
SITE 1 AD7 2 GLN A 212 PG5 A 604
SITE 1 AD8 1 PHE A 65
SITE 1 AD9 1 VAL A 33
SITE 1 AE1 8 VAL A 134 PHE A 137 GLU A 394 ASN A 488
SITE 2 AE1 8 TRP A 489 TRP A 492 ALA A 496 GLY A 499
SITE 1 AE2 2 ARG A 289 GLY A 322
SITE 1 AE3 2 TRP A 121 ARG A 193
SITE 1 AE4 2 ARG A 9 ARG A 11
CRYST1 160.994 160.994 91.282 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006211 0.003586 0.000000 0.00000
SCALE2 0.000000 0.007172 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010955 0.00000