HEADER VIRUS 22-AUG-22 8AT5 TITLE NATIVE COXSACKIEVIRUS A9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP4; COMPND 3 CHAIN: D; COMPND 4 SYNONYM: P1A,VIRION PROTEIN 4; COMPND 5 OTHER_DETAILS: VIRAL PROTEIN 4, VP4; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAPSID PROTEIN VP1; COMPND 8 CHAIN: A; COMPND 9 SYNONYM: P1D,VIRION PROTEIN 1; COMPND 10 OTHER_DETAILS: VIRAL PROTEIN 1, VP1; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CAPSID PROTEIN VP2; COMPND 13 CHAIN: B; COMPND 14 SYNONYM: P1B,VIRION PROTEIN 2; COMPND 15 OTHER_DETAILS: VIRAL PROTEIN 2, VP2; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: CAPSID PROTEIN VP3; COMPND 18 CHAIN: C; COMPND 19 SYNONYM: P1C,VIRION PROTEIN 3; COMPND 20 OTHER_DETAILS: VIRAL PROTEIN 3, VP3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN COXSACKIEVIRUS A9 (STRAIN GRIGGS); SOURCE 3 ORGANISM_TAXID: 12068; SOURCE 4 STRAIN: GRIGGS; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HUMAN COXSACKIEVIRUS A9 (STRAIN GRIGGS); SOURCE 7 ORGANISM_TAXID: 12068; SOURCE 8 STRAIN: GRIGGS; SOURCE 9 CELL_LINE: GMK; SOURCE 10 ATCC: 4594; SOURCE 11 ORGAN: KIDNEY; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: HUMAN COXSACKIEVIRUS A9 (STRAIN GRIGGS); SOURCE 14 ORGANISM_TAXID: 12068; SOURCE 15 STRAIN: GRIGGS; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN COXSACKIEVIRUS A9 (STRAIN GRIGGS); SOURCE 18 ORGANISM_TAXID: 12068; SOURCE 19 STRAIN: GRIGGS KEYWDS ICOSAHEDRAL SYMMETRY, INTACT VIRION, PICORNAVIRUS, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR A.DOMANSKA,Z.PLAVEC,V.RUOKOLAINEN,V.S.MARJOMAKI,S.J.BUTCHER REVDAT 2 01-FEB-23 8AT5 1 JRNL REVDAT 1 16-NOV-22 8AT5 0 JRNL AUTH A.DOMANSKA,Z.PLAVEC,V.RUOKOLAINEN,B.LOFLUND,V.MARJOMAKI, JRNL AUTH 2 S.J.BUTCHER JRNL TITL STRUCTURAL STUDIES REVEAL THAT ENDOSOMAL CATIONS PROMOTE JRNL TITL 2 FORMATION OF INFECTIOUS COXSACKIEVIRUS A9 A-PARTICLES, JRNL TITL 3 FACILITATING RNA AND VP4 RELEASE. JRNL REF J.VIROL. V. 96 36722 2022 JRNL REFN ESSN 1098-5514 JRNL PMID 36448797 JRNL DOI 10.1128/JVI.01367-22 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : XMIPP, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 RELION, RELION, RELION, RELION, COOT REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1D4M REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 21365 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8AT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292124035. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COXSACKIEVIRUS A9 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.25 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 150000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 240-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.808162 0.308815 -0.501505 74.61366 REMARK 350 BIOMT2 2 0.310070 0.500855 0.808085 -120.11259 REMARK 350 BIOMT3 2 0.500730 -0.808565 0.309017 193.61183 REMARK 350 BIOMT1 3 -0.001246 0.999996 -0.002414 0.83387 REMARK 350 BIOMT2 3 0.001167 0.002416 0.999996 -0.81649 REMARK 350 BIOMT3 3 0.999999 0.001243 -0.001170 -0.01439 REMARK 350 BIOMT1 4 0.808878 -0.307835 -0.500954 193.88569 REMARK 350 BIOMT2 4 0.310422 -0.499999 0.808480 73.72591 REMARK 350 BIOMT3 4 -0.499354 -0.809468 -0.308879 507.57965 REMARK 350 BIOMT1 5 -0.808299 -0.309849 -0.500646 507.85354 REMARK 350 BIOMT2 5 -0.309849 -0.499186 0.809201 193.72468 REMARK 350 BIOMT3 5 -0.500646 0.809201 0.307485 74.56492 REMARK 350 BIOMT1 6 -0.500000 -0.808894 0.309339 387.69645 REMARK 350 BIOMT2 6 0.808502 -0.307984 0.501469 -0.54608 REMARK 350 BIOMT3 6 -0.310363 0.500835 0.807984 0.36101 REMARK 350 BIOMT1 7 -0.308797 0.501483 0.808183 -0.10634 REMARK 350 BIOMT2 7 -0.498431 -0.809012 0.311554 386.86227 REMARK 350 BIOMT3 7 0.810069 -0.306616 0.499775 -0.66404 REMARK 350 BIOMT1 8 0.809871 -0.308184 0.499131 -0.19617 REMARK 350 BIOMT2 8 -0.308992 0.499146 0.809554 -0.00448 REMARK 350 BIOMT3 8 -0.498631 -0.809862 0.309017 387.68039 REMARK 350 BIOMT1 9 0.809151 0.311231 0.498407 -119.97005 REMARK 350 BIOMT2 9 -0.306579 -0.499996 0.809947 193.10289 REMARK 350 BIOMT3 9 0.501282 -0.808170 -0.309155 313.31716 REMARK 350 BIOMT1 10 0.001246 -0.999999 -0.000351 387.58545 REMARK 350 BIOMT2 10 -0.000893 -0.000352 1.000000 0.11885 REMARK 350 BIOMT3 10 -0.999999 -0.001245 -0.000894 388.29624 REMARK 350 BIOMT1 11 -0.809734 0.309214 0.498715 194.32968 REMARK 350 BIOMT2 11 0.309214 -0.497474 0.810497 73.07968 REMARK 350 BIOMT3 11 0.498715 0.810497 0.307209 -119.44996 REMARK 350 BIOMT1 12 0.307411 0.500667 -0.809216 194.22328 REMARK 350 BIOMT2 12 0.500667 -0.808272 -0.309886 313.47500 REMARK 350 BIOMT3 12 -0.809216 -0.309886 -0.499139 507.74571 REMARK 350 BIOMT1 13 -0.001246 0.001167 0.999999 0.01638 REMARK 350 BIOMT2 13 0.999996 0.002416 0.001243 -0.83188 REMARK 350 BIOMT3 13 -0.002414 0.999996 -0.001170 0.81848 REMARK 350 BIOMT1 14 0.310619 -0.497659 0.809847 73.09247 REMARK 350 BIOMT2 14 -0.497659 -0.811032 -0.307509 507.16564 REMARK 350 BIOMT3 14 0.809847 -0.307509 -0.499587 193.36895 REMARK 350 BIOMT1 15 -0.307632 -0.500752 0.809080 193.74500 REMARK 350 BIOMT2 15 -0.502336 0.807631 0.308855 74.80866 REMARK 350 BIOMT3 15 -0.808097 -0.311416 -0.499999 507.99203 REMARK 350 BIOMT1 16 0.502236 -0.807645 0.308979 193.14949 REMARK 350 BIOMT2 16 -0.808145 -0.311253 0.500024 313.90195 REMARK 350 BIOMT3 16 -0.307671 -0.500830 -0.809017 507.58171 REMARK 350 BIOMT1 17 -0.809015 -0.310201 0.499270 314.13639 REMARK 350 BIOMT2 17 0.306801 0.501666 0.808829 -119.78005 REMARK 350 BIOMT3 17 -0.501367 0.807531 -0.310685 194.91678 REMARK 350 BIOMT1 18 0.307853 0.502420 0.807960 -119.83868 REMARK 350 BIOMT2 18 0.502420 -0.806992 0.310383 192.59153 REMARK 350 BIOMT3 18 0.807960 0.310383 -0.500861 74.22336 REMARK 350 BIOMT1 19 0.497761 0.810520 0.308693 -119.55661 REMARK 350 BIOMT2 19 0.809744 -0.306779 -0.500201 193.24383 REMARK 350 BIOMT3 19 -0.310722 0.498943 -0.809016 314.39948 REMARK 350 BIOMT1 20 0.502236 -0.808145 -0.307671 312.83985 REMARK 350 BIOMT2 20 -0.807645 -0.311253 -0.500830 507.91128 REMARK 350 BIOMT3 20 0.308979 0.500024 -0.809017 194.00441 REMARK 350 BIOMT1 21 -0.999996 -0.002765 0.000003 388.41706 REMARK 350 BIOMT2 21 -0.002765 0.999994 -0.002063 0.93761 REMARK 350 BIOMT3 21 0.000003 -0.002063 -0.999998 388.28016 REMARK 350 BIOMT1 22 -0.497846 -0.810383 -0.308915 507.47193 REMARK 350 BIOMT2 22 -0.810383 0.307808 0.498531 194.64051 REMARK 350 BIOMT3 22 -0.308915 0.498531 -0.809962 314.31225 REMARK 350 BIOMT1 23 0.001246 -0.000893 -0.999999 387.81308 REMARK 350 BIOMT2 23 -0.999999 -0.000352 -0.001245 388.06873 REMARK 350 BIOMT3 23 -0.000351 1.000000 -0.000894 0.36416 REMARK 350 BIOMT1 24 -0.502151 0.808281 0.307450 75.04263 REMARK 350 BIOMT2 24 0.808281 0.312284 0.499159 -120.27460 REMARK 350 BIOMT3 24 0.307450 0.499159 -0.810133 194.68511 REMARK 350 BIOMT1 25 0.999996 0.002765 -0.000276 -0.48155 REMARK 350 BIOMT2 25 0.002765 -0.999996 0.000000 387.09892 REMARK 350 BIOMT3 25 -0.000276 0.000000 -1.000000 387.93493 REMARK 350 BIOMT1 26 0.309018 0.498516 -0.809932 194.46738 REMARK 350 BIOMT2 26 -0.499815 0.809653 0.307647 74.16196 REMARK 350 BIOMT3 26 0.809131 0.309747 0.499363 -119.86458 REMARK 350 BIOMT1 27 -0.001519 -0.001171 -0.999998 388.40298 REMARK 350 BIOMT2 27 0.999999 0.000349 -0.001520 0.10400 REMARK 350 BIOMT3 27 0.000351 -0.999999 0.001170 387.46340 REMARK 350 BIOMT1 28 -0.309239 0.499899 -0.808994 313.92292 REMARK 350 BIOMT2 28 -0.500186 -0.809017 -0.308716 507.49915 REMARK 350 BIOMT3 28 -0.808817 0.309180 0.500222 193.86544 REMARK 350 BIOMT1 29 -0.810007 0.307963 -0.499046 388.13150 REMARK 350 BIOMT2 29 0.307963 -0.500816 -0.808914 388.03966 REMARK 350 BIOMT3 29 -0.499046 -0.808914 0.310824 387.22688 REMARK 350 BIOMT1 30 0.499915 0.809031 -0.309118 0.13291 REMARK 350 BIOMT2 30 -0.809140 0.309017 -0.499800 387.78210 REMARK 350 BIOMT3 30 -0.308831 0.499978 0.809102 0.01335 REMARK 350 BIOMT1 31 0.309018 -0.501567 -0.808046 387.93551 REMARK 350 BIOMT2 31 0.500101 0.808378 -0.310522 0.37235 REMARK 350 BIOMT3 31 0.808954 -0.308148 0.500638 -0.31835 REMARK 350 BIOMT1 32 -0.307632 -0.502336 -0.808097 507.68829 REMARK 350 BIOMT2 32 -0.500752 0.807631 -0.311416 194.79718 REMARK 350 BIOMT3 32 0.809080 0.308855 -0.499999 74.13523 REMARK 350 BIOMT1 33 -0.502320 0.807508 -0.309201 194.81874 REMARK 350 BIOMT2 33 0.807508 0.310219 -0.501692 74.38137 REMARK 350 BIOMT3 33 -0.309201 -0.501692 -0.807899 507.82862 REMARK 350 BIOMT1 34 -0.310398 0.497575 -0.809983 314.78983 REMARK 350 BIOMT2 34 0.499329 0.810396 0.306478 -119.53034 REMARK 350 BIOMT3 34 0.808903 -0.309318 -0.499998 193.98251 REMARK 350 BIOMT1 35 0.808878 0.310422 -0.499354 73.74616 REMARK 350 BIOMT2 35 -0.307835 -0.499999 -0.809468 507.41728 REMARK 350 BIOMT3 35 -0.500954 0.808480 -0.308879 194.30253 REMARK 350 BIOMT1 36 -0.001519 0.999999 0.000351 0.35006 REMARK 350 BIOMT2 36 -0.001171 0.000349 -0.999999 387.91771 REMARK 350 BIOMT3 36 -0.999998 -0.001520 0.001170 387.94909 REMARK 350 BIOMT1 37 0.809871 -0.308992 -0.498631 193.46690 REMARK 350 BIOMT2 37 -0.308184 0.499146 -0.809862 313.90920 REMARK 350 BIOMT3 37 0.499131 0.809554 0.309017 -119.69833 REMARK 350 BIOMT1 38 -0.809014 -0.311452 -0.498491 507.88508 REMARK 350 BIOMT2 38 0.307613 0.498327 -0.810583 194.77921 REMARK 350 BIOMT3 38 0.500869 -0.809115 -0.307347 313.22953 REMARK 350 BIOMT1 39 -0.497676 -0.809881 0.310501 387.21179 REMARK 350 BIOMT2 39 -0.809881 0.305746 -0.500612 388.71701 REMARK 350 BIOMT3 39 0.310501 -0.500612 -0.808070 387.46673 REMARK 350 BIOMT1 40 -0.310398 0.499329 0.808903 0.48200 REMARK 350 BIOMT2 40 0.497575 0.810396 -0.309318 0.23784 REMARK 350 BIOMT3 40 -0.809983 0.306478 -0.499998 388.59885 REMARK 350 BIOMT1 41 0.809151 -0.306579 0.501282 -0.78492 REMARK 350 BIOMT2 41 0.311231 -0.499996 -0.808170 387.10270 REMARK 350 BIOMT3 41 0.498407 0.809946 -0.309155 0.25461 REMARK 350 BIOMT1 42 0.808162 0.310070 0.500730 -120.00382 REMARK 350 BIOMT2 42 0.308815 0.500855 -0.808565 193.66492 REMARK 350 BIOMT3 42 -0.501505 0.808085 0.309017 74.65088 REMARK 350 BIOMT1 43 0.001520 -0.999996 0.002414 386.99537 REMARK 350 BIOMT2 43 0.000897 -0.002413 -0.999997 388.05162 REMARK 350 BIOMT3 43 0.999998 0.001522 0.000893 -0.46846 REMARK 350 BIOMT1 44 -0.809014 0.307613 0.500869 194.08248 REMARK 350 BIOMT2 44 -0.311452 0.498327 -0.809115 314.55690 REMARK 350 BIOMT3 44 -0.498491 -0.810583 -0.307347 507.33113 REMARK 350 BIOMT1 45 -0.809015 0.306801 -0.501367 388.61435 REMARK 350 BIOMT2 45 -0.310201 0.501666 0.807531 0.13381 REMARK 350 BIOMT3 45 0.499270 0.808829 -0.310685 0.60061 REMARK 350 BIOMT1 46 0.001520 0.000897 0.999998 -0.46769 REMARK 350 BIOMT2 46 -0.999996 -0.002413 0.001522 387.93084 REMARK 350 BIOMT3 46 0.002414 -0.999997 0.000893 387.11644 REMARK 350 BIOMT1 47 0.309018 -0.499815 0.809131 73.95953 REMARK 350 BIOMT2 47 0.498516 0.809653 0.309747 -119.86275 REMARK 350 BIOMT3 47 -0.809932 0.307647 0.499363 194.54558 REMARK 350 BIOMT1 48 -0.308797 -0.498431 0.810069 193.32910 REMARK 350 BIOMT2 48 0.501483 -0.809012 -0.306616 312.82607 REMARK 350 BIOMT3 48 0.808183 0.311554 0.499775 -120.11068 REMARK 350 BIOMT1 49 0.500084 -0.808364 0.310585 193.39482 REMARK 350 BIOMT2 49 0.809530 0.309019 -0.499167 73.73204 REMARK 350 BIOMT3 49 0.307533 0.501053 0.808931 -119.70028 REMARK 350 BIOMT1 50 -0.808025 -0.309036 0.501590 313.26854 REMARK 350 BIOMT2 50 -0.309036 -0.502522 -0.807445 507.74705 REMARK 350 BIOMT3 50 0.501590 -0.807445 0.310547 192.93135 REMARK 350 BIOMT1 51 0.309018 0.500101 0.808954 -119.80776 REMARK 350 BIOMT2 51 -0.501567 0.808378 -0.308148 194.17673 REMARK 350 BIOMT3 51 -0.808046 -0.310522 0.500638 313.74463 REMARK 350 BIOMT1 52 0.500084 0.809530 0.307533 -119.59029 REMARK 350 BIOMT2 52 -0.808364 0.309019 0.501053 193.52512 REMARK 350 BIOMT3 52 0.310585 -0.499167 0.808931 73.56845 REMARK 350 BIOMT1 53 0.499915 -0.809140 -0.308831 313.70787 REMARK 350 BIOMT2 53 0.809031 0.309017 0.499978 -119.94547 REMARK 350 BIOMT3 53 -0.309118 -0.499800 0.809102 193.84383 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000274 387.82924 REMARK 350 BIOMT2 54 0.000000 -0.999998 0.002064 387.23517 REMARK 350 BIOMT3 54 0.000274 0.002064 0.999998 -0.45261 REMARK 350 BIOMT1 55 -0.499999 -0.809667 -0.307311 507.43972 REMARK 350 BIOMT2 55 0.809004 -0.310048 -0.499383 193.86224 REMARK 350 BIOMT3 55 0.309053 -0.498307 0.810047 73.48231 REMARK 350 BIOMT1 56 0.497761 0.809744 -0.310722 0.72360 REMARK 350 BIOMT2 56 0.810520 -0.306779 0.498943 -0.68134 REMARK 350 BIOMT3 56 0.308693 -0.500201 -0.809016 387.92139 REMARK 350 BIOMT1 57 -0.499999 0.809004 0.309053 74.17440 REMARK 350 BIOMT2 57 -0.809667 -0.310048 -0.498307 507.58048 REMARK 350 BIOMT3 57 -0.307311 -0.499383 0.810047 193.22913 REMARK 350 BIOMT1 58 0.310176 -0.499245 -0.809040 387.45358 REMARK 350 BIOMT2 58 -0.499245 -0.809762 0.308286 387.79924 REMARK 350 BIOMT3 58 -0.809040 0.308286 -0.500414 388.14602 REMARK 350 BIOMT1 59 -0.309239 -0.500186 -0.808817 507.72291 REMARK 350 BIOMT2 59 0.499899 -0.809017 0.309180 193.70625 REMARK 350 BIOMT3 59 -0.808994 -0.308716 0.500222 313.65926 REMARK 350 BIOMT1 60 -0.500000 0.808502 -0.310363 194.40170 REMARK 350 BIOMT2 60 -0.808894 -0.307984 0.500835 313.25632 REMARK 350 BIOMT3 60 0.309339 0.501469 0.807984 -119.94756 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR D 15 REMARK 465 SER D 16 REMARK 465 LEU D 17 REMARK 465 SER D 18 REMARK 465 ALA D 19 REMARK 465 ALA D 20 REMARK 465 GLY D 21 REMARK 465 ASN D 22 REMARK 465 SER D 23 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 284 REMARK 465 ALA A 285 REMARK 465 GLN A 286 REMARK 465 SER A 287 REMARK 465 ARG A 288 REMARK 465 ARG A 289 REMARK 465 ARG A 290 REMARK 465 GLY A 291 REMARK 465 ASP A 292 REMARK 465 MET A 293 REMARK 465 SER A 294 REMARK 465 THR A 295 REMARK 465 LEU A 296 REMARK 465 ASN A 297 REMARK 465 THR A 298 REMARK 465 HIS A 299 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 CYS B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 GLN B 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY D 2 O2 MYR D 101 2.04 REMARK 500 OD2 ASP A 203 NH1 ARG A 205 2.14 REMARK 500 NH2 ARG B 12 OE2 GLU B 27 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 257 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 12 -108.70 42.47 REMARK 500 HIS A 13 145.33 68.70 REMARK 500 ARG A 59 37.62 -99.72 REMARK 500 GLN A 163 38.92 -97.10 REMARK 500 THR A 164 121.94 -37.06 REMARK 500 VAL A 249 75.20 54.01 REMARK 500 ASN B 30 -178.11 -65.69 REMARK 500 ASP B 57 -121.92 62.96 REMARK 500 LEU B 66 54.35 -96.55 REMARK 500 ASP B 67 -178.84 60.83 REMARK 500 GLN B 139 -164.00 52.63 REMARK 500 ALA B 143 48.47 -82.95 REMARK 500 MET B 146 -2.08 -142.38 REMARK 500 ALA B 147 115.68 -162.23 REMARK 500 ARG B 256 36.11 -141.84 REMARK 500 LEU B 257 157.13 57.15 REMARK 500 GLN C 59 -5.50 71.07 REMARK 500 PRO C 136 171.64 -58.90 REMARK 500 MET C 224 70.27 61.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15634 RELATED DB: EMDB REMARK 900 NATIVE COXSACKIEVIRUS A9 DBREF 8AT5 D 2 69 UNP P21404 POLG_CXA9 2 69 DBREF 8AT5 A 1 299 UNP P21404 POLG_CXA9 569 867 DBREF 8AT5 B 1 261 UNP P21404 POLG_CXA9 70 330 DBREF 8AT5 C 1 238 UNP P21404 POLG_CXA9 331 568 SEQADV 8AT5 VAL A 11 UNP P21404 ARG 579 VARIANT SEQADV 8AT5 VAL A 12 UNP P21404 CYS 580 VARIANT SEQADV 8AT5 HIS A 13 UNP P21404 THR 581 VARIANT SEQADV 8AT5 SER A 20 UNP P21404 THR 588 VARIANT SEQADV 8AT5 ASN A 84 UNP P21404 LYS 652 VARIANT SEQADV 8AT5 ASP A 85 UNP P21404 HIS 653 VARIANT SEQADV 8AT5 HIS A 142 UNP P21404 ARG 710 VARIANT SEQADV 8AT5 VAL B 110 UNP P21404 LEU 179 VARIANT SEQRES 1 D 68 GLY ALA GLN VAL SER THR GLN LYS THR GLY ALA HIS GLU SEQRES 2 D 68 THR SER LEU SER ALA ALA GLY ASN SER ILE ILE HIS TYR SEQRES 3 D 68 THR ASN ILE ASN TYR TYR LYS ASP ALA ALA SER ASN SER SEQRES 4 D 68 ALA ASN ARG GLN ASP PHE THR GLN ASP PRO SER LYS PHE SEQRES 5 D 68 THR GLU PRO VAL LYS ASP VAL MET ILE LYS SER LEU PRO SEQRES 6 D 68 ALA LEU ASN SEQRES 1 A 299 GLY ASP VAL GLU GLU ALA ILE GLU ARG ALA VAL VAL HIS SEQRES 2 A 299 VAL ALA ASP THR MET ARG SER GLY PRO SER ASN SER ALA SEQRES 3 A 299 SER VAL PRO ALA LEU THR ALA VAL GLU THR GLY HIS THR SEQRES 4 A 299 SER GLN VAL THR PRO SER ASP THR MET GLN THR ARG HIS SEQRES 5 A 299 VAL LYS ASN TYR HIS SER ARG SER GLU SER THR VAL GLU SEQRES 6 A 299 ASN PHE LEU GLY ARG SER ALA CYS VAL TYR MET GLU GLU SEQRES 7 A 299 TYR LYS THR THR ASP ASN ASP VAL ASN LYS LYS PHE VAL SEQRES 8 A 299 ALA TRP PRO ILE ASN THR LYS GLN MET VAL GLN MET ARG SEQRES 9 A 299 ARG LYS LEU GLU MET PHE THR TYR LEU ARG PHE ASP MET SEQRES 10 A 299 GLU VAL THR PHE VAL ILE THR SER ARG GLN ASP PRO GLY SEQRES 11 A 299 THR THR LEU ALA GLN ASP MET PRO VAL LEU THR HIS GLN SEQRES 12 A 299 ILE MET TYR VAL PRO PRO GLY GLY PRO ILE PRO ALA LYS SEQRES 13 A 299 VAL ASP ASP TYR ALA TRP GLN THR SER THR ASN PRO SER SEQRES 14 A 299 ILE PHE TRP THR GLU GLY ASN ALA PRO ALA ARG MET SER SEQRES 15 A 299 ILE PRO PHE ILE SER ILE GLY ASN ALA TYR SER ASN PHE SEQRES 16 A 299 TYR ASP GLY TRP SER ASN PHE ASP GLN ARG GLY SER TYR SEQRES 17 A 299 GLY TYR ASN THR LEU ASN ASN LEU GLY HIS ILE TYR VAL SEQRES 18 A 299 ARG HIS VAL SER GLY SER SER PRO HIS PRO ILE THR SER SEQRES 19 A 299 THR ILE ARG VAL TYR PHE LYS PRO LYS HIS THR ARG ALA SEQRES 20 A 299 TRP VAL PRO ARG PRO PRO ARG LEU CYS GLN TYR LYS LYS SEQRES 21 A 299 ALA PHE SER VAL ASP PHE THR PRO THR PRO ILE THR ASP SEQRES 22 A 299 THR ARG LYS ASP ILE ASN THR VAL THR THR VAL ALA GLN SEQRES 23 A 299 SER ARG ARG ARG GLY ASP MET SER THR LEU ASN THR HIS SEQRES 1 B 261 SER PRO THR VAL GLU GLU CYS GLY TYR SER ASP ARG VAL SEQRES 2 B 261 ARG SER ILE THR LEU GLY ASN SER THR ILE THR THR GLN SEQRES 3 B 261 GLU CYS ALA ASN VAL VAL VAL GLY TYR GLY ARG TRP PRO SEQRES 4 B 261 THR TYR LEU ARG ASP ASP GLU ALA THR ALA GLU ASP GLN SEQRES 5 B 261 PRO THR GLN PRO ASP VAL ALA THR CYS ARG PHE TYR THR SEQRES 6 B 261 LEU ASP SER ILE LYS TRP GLU LYS GLY SER VAL GLY TRP SEQRES 7 B 261 TRP TRP LYS PHE PRO GLU ALA LEU SER ASP MET GLY LEU SEQRES 8 B 261 PHE GLY GLN ASN MET GLN TYR HIS TYR LEU GLY ARG ALA SEQRES 9 B 261 GLY TYR THR ILE HIS VAL GLN CYS ASN ALA SER LYS PHE SEQRES 10 B 261 HIS GLN GLY CYS LEU LEU VAL VAL CYS VAL PRO GLU ALA SEQRES 11 B 261 GLU MET GLY GLY ALA VAL VAL GLY GLN ALA PHE SER ALA SEQRES 12 B 261 THR ALA MET ALA ASN GLY ASP LYS ALA TYR GLU PHE THR SEQRES 13 B 261 SER ALA THR GLN SER ASP GLN THR LYS VAL GLN THR ALA SEQRES 14 B 261 ILE HIS ASN ALA GLY MET GLY VAL GLY VAL GLY ASN LEU SEQRES 15 B 261 THR ILE TYR PRO HIS GLN TRP ILE ASN LEU ARG THR ASN SEQRES 16 B 261 ASN SER ALA THR ILE VAL MET PRO TYR ILE ASN SER VAL SEQRES 17 B 261 PRO MET ASP ASN MET PHE ARG HIS TYR ASN PHE THR LEU SEQRES 18 B 261 MET VAL ILE PRO PHE VAL LYS LEU ASP TYR ALA ASP THR SEQRES 19 B 261 ALA SER THR TYR VAL PRO ILE THR VAL THR VAL ALA PRO SEQRES 20 B 261 MET CYS ALA GLU TYR ASN GLY LEU ARG LEU ALA GLN ALA SEQRES 21 B 261 GLN SEQRES 1 C 238 GLY LEU PRO THR MET ASN THR PRO GLY SER THR GLN PHE SEQRES 2 C 238 LEU THR SER ASP ASP PHE GLN SER PRO CYS ALA LEU PRO SEQRES 3 C 238 GLN PHE ASP VAL THR PRO SER MET ASN ILE PRO GLY GLU SEQRES 4 C 238 VAL LYS ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 C 238 VAL PRO VAL ASN ASN VAL GLN ASP THR THR ASP GLN MET SEQRES 6 C 238 GLU MET PHE ARG ILE PRO VAL THR ILE ASN ALA PRO LEU SEQRES 7 C 238 GLN GLN GLN VAL PHE GLY LEU ARG LEU GLN PRO GLY LEU SEQRES 8 C 238 ASP SER VAL PHE LYS HIS THR LEU LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR ALA HIS TRP SER GLY SER MET LYS LEU THR SEQRES 10 C 238 PHE VAL PHE CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 C 238 LEU ILE ALA TYR SER PRO PRO GLY ALA ASN PRO PRO LYS SEQRES 12 C 238 THR ARG LYS ASP ALA MET LEU GLY THR HIS ILE ILE TRP SEQRES 13 C 238 ASP ILE GLY LEU GLN SER SER CYS VAL LEU CYS VAL PRO SEQRES 14 C 238 TRP ILE SER GLN THR HIS TYR ARG LEU VAL GLN GLN ASP SEQRES 15 C 238 GLU TYR THR SER ALA GLY TYR VAL THR CYS TRP TYR GLN SEQRES 16 C 238 THR GLY MET ILE VAL PRO PRO GLY THR PRO ASN SER SER SEQRES 17 C 238 SER ILE MET CYS PHE ALA SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG MET LEU ARG ASP THR PRO PHE ILE SER GLN ASP SEQRES 19 C 238 ASN LYS LEU GLN HET MYR D 101 43 HET PLM A 301 49 HETNAM MYR MYRISTIC ACID HETNAM PLM PALMITIC ACID FORMUL 5 MYR C14 H28 O2 FORMUL 6 PLM C16 H32 O2 HELIX 1 AA1 ASP D 35 ASN D 39 5 5 HELIX 2 AA2 PRO D 50 GLU D 55 1 6 HELIX 3 AA3 ALA A 33 GLY A 37 5 5 HELIX 4 AA4 THR A 43 THR A 47 5 5 HELIX 5 AA5 ARG A 59 SER A 62 5 4 HELIX 6 AA6 THR A 63 LEU A 68 1 6 HELIX 7 AA7 ASP A 85 PHE A 90 5 6 HELIX 8 AA8 MET A 100 GLU A 108 1 9 HELIX 9 AA9 ASP A 159 GLN A 163 5 5 HELIX 10 AB1 GLY A 209 ASN A 214 5 6 HELIX 11 AB2 PRO B 56 THR B 60 5 5 HELIX 12 AB3 PRO B 83 SER B 87 5 5 HELIX 13 AB4 MET B 89 TYR B 98 1 10 HELIX 14 AB5 ALA B 169 ALA B 173 5 5 HELIX 15 AB6 GLY B 178 TYR B 185 5 8 HELIX 16 AB7 ASN C 42 GLU C 48 1 7 HELIX 17 AB8 ASP C 63 ARG C 69 5 7 HELIX 18 AB9 ASP C 92 HIS C 97 1 6 HELIX 19 AC1 THR C 98 ASN C 105 1 8 HELIX 20 AC2 THR C 144 MET C 149 1 6 HELIX 21 AC3 ASP C 182 SER C 186 5 5 SHEET 1 AA1 3 HIS D 26 ASN D 29 0 SHEET 2 AA1 3 ALA D 3 THR D 7 -1 N GLN D 4 O ASN D 29 SHEET 3 AA1 3 VAL A 3 GLU A 4 1 O GLU A 4 N ALA D 3 SHEET 1 AA2 5 LEU A 31 THR A 32 0 SHEET 2 AA2 5 SER C 163 VAL C 168 -1 O SER C 163 N THR A 32 SHEET 3 AA2 5 MET C 114 PHE C 120 -1 N LEU C 116 O LEU C 166 SHEET 4 AA2 5 SER C 207 ALA C 216 -1 O SER C 215 N LYS C 115 SHEET 5 AA2 5 SER C 51 VAL C 52 -1 N SER C 51 O ALA C 214 SHEET 1 AA3 5 LEU A 31 THR A 32 0 SHEET 2 AA3 5 SER C 163 VAL C 168 -1 O SER C 163 N THR A 32 SHEET 3 AA3 5 MET C 114 PHE C 120 -1 N LEU C 116 O LEU C 166 SHEET 4 AA3 5 SER C 207 ALA C 216 -1 O SER C 215 N LYS C 115 SHEET 5 AA3 5 ILE C 70 THR C 73 -1 N ILE C 70 O ILE C 210 SHEET 1 AA4 4 ALA A 72 LYS A 80 0 SHEET 2 AA4 4 ILE A 232 PRO A 250 -1 O VAL A 238 N VAL A 74 SHEET 3 AA4 4 PHE A 110 GLN A 127 -1 N ASP A 116 O LYS A 243 SHEET 4 AA4 4 TYR A 192 SER A 193 -1 O TYR A 192 N LEU A 113 SHEET 1 AA5 4 ALA A 179 ILE A 183 0 SHEET 2 AA5 4 PHE A 110 GLN A 127 -1 N MET A 117 O ILE A 183 SHEET 3 AA5 4 ILE A 232 PRO A 250 -1 O LYS A 243 N ASP A 116 SHEET 4 AA5 4 GLU C 39 VAL C 40 -1 O VAL C 40 N ALA A 247 SHEET 1 AA6 4 VAL A 91 PRO A 94 0 SHEET 2 AA6 4 HIS A 218 HIS A 223 -1 O ILE A 219 N TRP A 93 SHEET 3 AA6 4 THR A 141 VAL A 147 -1 N MET A 145 O TYR A 220 SHEET 4 AA6 4 SER A 169 THR A 173 -1 O TRP A 172 N HIS A 142 SHEET 1 AA7 2 ARG B 14 LEU B 18 0 SHEET 2 AA7 2 SER B 21 THR B 25 -1 O ILE B 23 N ILE B 16 SHEET 1 AA8 5 VAL B 32 VAL B 33 0 SHEET 2 AA8 5 SER B 197 MET B 202 1 O VAL B 201 N VAL B 32 SHEET 3 AA8 5 HIS B 99 GLN B 111 -1 N ILE B 108 O ILE B 200 SHEET 4 AA8 5 VAL B 239 LEU B 255 -1 O MET B 248 N GLY B 105 SHEET 5 AA8 5 TYR B 64 TRP B 71 -1 N LEU B 66 O VAL B 243 SHEET 1 AA9 5 TYR B 153 GLU B 154 0 SHEET 2 AA9 5 TRP B 78 PHE B 82 -1 N TRP B 79 O TYR B 153 SHEET 3 AA9 5 PHE B 219 ASP B 230 -1 O LEU B 221 N TRP B 80 SHEET 4 AA9 5 GLN B 119 PRO B 128 -1 N VAL B 127 O THR B 220 SHEET 5 AA9 5 HIS B 187 ASN B 191 -1 O GLN B 188 N VAL B 124 SHEET 1 AB1 4 GLN C 81 ARG C 86 0 SHEET 2 AB1 4 TYR C 189 TYR C 194 -1 O CYS C 192 N VAL C 82 SHEET 3 AB1 4 LYS C 129 SER C 135 -1 N LEU C 131 O TRP C 193 SHEET 4 AB1 4 THR C 152 ASP C 157 -1 O THR C 152 N TYR C 134 SHEET 1 AB2 3 ARG C 177 LEU C 178 0 SHEET 2 AB2 3 TYR C 107 SER C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AB2 3 SER C 221 LEU C 225 -1 O SER C 221 N SER C 111 CISPEP 1 PHE B 82 PRO B 83 0 0.19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000