HEADER SIGNALING PROTEIN 23-AUG-22 8ATK TITLE THE SH2 DOMAIN OF MOUSE SH2B1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH2B ADAPTER PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRO-RICH,PH AND SH2 DOMAIN-CONTAINING SIGNALING MEDIATOR, COMPND 5 PSM,SH2 DOMAIN-CONTAINING PROTEIN 1B,SH2-B PH DOMAIN-CONTAINING COMPND 6 SIGNALING MEDIATOR 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SH2B1, SH2BPSM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SH2 DOMAIN, PHOSPHOTYROSINE BINDING, JAK2 BINDING, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.J.FOWLER,M.P.WILLIAMSON,M.F.ALBALWI REVDAT 4 19-JUN-24 8ATK 1 REMARK REVDAT 3 16-AUG-23 8ATK 1 JRNL REVDAT 2 05-JUL-23 8ATK 1 JRNL REVDAT 1 24-MAY-23 8ATK 0 JRNL AUTH N.J.FOWLER,M.F.ALBALWI,S.LEE,A.M.HOUNSLOW,M.P.WILLIAMSON JRNL TITL IMPROVED METHODOLOGY FOR PROTEIN NMR STRUCTURE CALCULATION JRNL TITL 2 USING HYDROGEN BOND RESTRAINTS AND ANSURR VALIDATION: THE JRNL TITL 3 SH2 DOMAIN OF SH2B1. JRNL REF STRUCTURE V. 31 975 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 37311460 JRNL DOI 10.1016/J.STR.2023.05.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NOE RESTRAINTS WERE CONSENSUS REMARK 3 RESTRAINTS, APPEARING IN AT LEAST 60% OF THE CALCULATIONS FROM REMARK 3 THE PREVIOUS CALCULATION REMARK 4 REMARK 4 8ATK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124992. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50 MM POTASSIUM PHOSPHATE, 1 MM REMARK 210 TRIMETHYLSILYL PROPIONATE, 0.8 REMARK 210 MM [U-100% 13C; U-100% 15N] SH2, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 2D 1H- REMARK 210 13C HSQC; 3D HBHA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 2D 1H- REMARK 210 13C HSQC AROMATIC; 2D HBCBCGCDHD; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.98.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LYS A 1 REMARK 465 ILE A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 45 HG23 VAL A 55 1.34 REMARK 500 HE2 TYR A 15 HB ILE A 87 1.35 REMARK 500 O LEU A 12 H GLY A 14 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 13 42.46 -61.58 REMARK 500 1 SER A 107 -63.56 -160.28 REMARK 500 1 ASP A 108 2.45 -65.81 REMARK 500 2 SER A 13 41.17 -60.95 REMARK 500 2 GLN A 80 -78.62 65.06 REMARK 500 2 HIS A 81 -7.55 -150.24 REMARK 500 2 SER A 107 140.45 -176.97 REMARK 500 2 ASP A 108 43.28 -82.73 REMARK 500 2 LEU A 111 95.64 -65.86 REMARK 500 3 PRO A 11 -113.51 -73.36 REMARK 500 3 SER A 13 42.55 -61.74 REMARK 500 3 ARG A 50 -170.70 85.95 REMARK 500 3 SER A 106 77.25 56.90 REMARK 500 3 ASP A 108 25.23 -77.54 REMARK 500 4 SER A 13 41.37 -62.07 REMARK 500 4 GLN A 80 -65.02 71.64 REMARK 500 4 HIS A 81 -5.14 -177.14 REMARK 500 4 LEU A 82 -167.11 -128.22 REMARK 500 4 ASP A 108 31.84 -81.77 REMARK 500 5 SER A 13 41.01 -68.34 REMARK 500 5 GLN A 80 -84.45 62.59 REMARK 500 5 HIS A 81 -6.08 -147.76 REMARK 500 5 ASP A 108 36.12 -82.31 REMARK 500 6 SER A 13 42.99 -57.59 REMARK 500 6 VAL A 79 -166.71 -126.60 REMARK 500 6 GLN A 80 96.05 -46.36 REMARK 500 6 SER A 106 29.31 -159.92 REMARK 500 6 ASP A 108 29.60 -78.01 REMARK 500 7 SER A 13 45.26 -60.71 REMARK 500 7 GLN A 80 -85.91 62.66 REMARK 500 7 HIS A 81 -2.97 -145.13 REMARK 500 7 SER A 106 142.78 -175.22 REMARK 500 7 SER A 107 34.45 -91.48 REMARK 500 7 ASP A 108 29.67 -79.25 REMARK 500 8 SER A 13 41.99 -60.54 REMARK 500 8 GLN A 80 -73.86 64.33 REMARK 500 8 HIS A 81 -18.22 -145.35 REMARK 500 8 GLN A 85 -64.00 -100.37 REMARK 500 8 ASP A 108 43.87 -81.41 REMARK 500 8 LEU A 111 90.87 -68.59 REMARK 500 9 PRO A 11 0.61 -66.04 REMARK 500 9 SER A 13 41.34 -62.58 REMARK 500 9 ARG A 50 97.83 -163.01 REMARK 500 9 GLN A 80 100.70 -48.57 REMARK 500 9 HIS A 81 -7.26 72.21 REMARK 500 9 ASP A 108 29.69 -77.06 REMARK 500 10 PRO A 11 -114.43 -70.18 REMARK 500 10 SER A 13 40.49 -63.74 REMARK 500 10 GLN A 85 -62.87 -99.80 REMARK 500 10 ASP A 108 43.54 -82.46 REMARK 500 REMARK 500 THIS ENTRY HAS 106 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 51342 RELATED DB: BMRB DBREF 8ATK A 9 118 UNP Q91ZM2 SH2B1_MOUSE 519 628 SEQADV 8ATK LYS A 1 UNP Q91ZM2 EXPRESSION TAG SEQADV 8ATK ILE A 2 UNP Q91ZM2 EXPRESSION TAG SEQADV 8ATK HIS A 3 UNP Q91ZM2 EXPRESSION TAG SEQADV 8ATK HIS A 4 UNP Q91ZM2 EXPRESSION TAG SEQADV 8ATK HIS A 5 UNP Q91ZM2 EXPRESSION TAG SEQADV 8ATK HIS A 6 UNP Q91ZM2 EXPRESSION TAG SEQADV 8ATK HIS A 7 UNP Q91ZM2 EXPRESSION TAG SEQADV 8ATK HIS A 8 UNP Q91ZM2 EXPRESSION TAG SEQRES 1 A 118 LYS ILE HIS HIS HIS HIS HIS HIS ASP GLN PRO LEU SER SEQRES 2 A 118 GLY TYR PRO TRP PHE HIS GLY MET LEU SER ARG LEU LYS SEQRES 3 A 118 ALA ALA GLN LEU VAL LEU GLU GLY GLY THR GLY SER HIS SEQRES 4 A 118 GLY VAL PHE LEU VAL ARG GLN SER GLU THR ARG ARG GLY SEQRES 5 A 118 GLU TYR VAL LEU THR PHE ASN PHE GLN GLY LYS ALA LYS SEQRES 6 A 118 HIS LEU ARG LEU SER LEU ASN GLU GLU GLY GLN CYS ARG SEQRES 7 A 118 VAL GLN HIS LEU TRP PHE GLN SER ILE PHE ASP MET LEU SEQRES 8 A 118 GLU HIS PHE ARG VAL HIS PRO ILE PRO LEU GLU SER GLY SEQRES 9 A 118 GLY SER SER ASP VAL VAL LEU VAL SER TYR VAL PRO SER SEQRES 10 A 118 GLN HELIX 1 AA1 SER A 23 LEU A 32 1 10 HELIX 2 AA2 GLY A 35 HIS A 39 5 5 HELIX 3 AA3 SER A 86 HIS A 97 1 12 SHEET 1 AA1 6 LEU A 82 PHE A 84 0 SHEET 2 AA1 6 CYS A 77 VAL A 79 -1 N CYS A 77 O PHE A 84 SHEET 3 AA1 6 LYS A 63 LEU A 71 -1 N SER A 70 O ARG A 78 SHEET 4 AA1 6 GLU A 53 PHE A 60 -1 N LEU A 56 O LEU A 67 SHEET 5 AA1 6 VAL A 41 ARG A 45 -1 N ARG A 45 O VAL A 55 SHEET 6 AA1 6 SER A 113 TYR A 114 1 O SER A 113 N PHE A 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1