HEADER TRANSFERASE 25-AUG-22 8AU3 TITLE C-MET Y1234E,Y1235E MUTANT IN COMPLEX WITH TEPOTINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HGF RECEPTOR,HGF/SF RECEPTOR,PROTO-ONCOGENE C-MET,SCATTER COMPND 5 FACTOR RECEPTOR,SF RECEPTOR,TYROSINE-PROTEIN KINASE MET; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MET; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR U.GRAEDLER,A.LAMMENS REVDAT 3 22-NOV-23 8AU3 1 JRNL REVDAT 2 18-OCT-23 8AU3 1 JRNL REVDAT 1 06-SEP-23 8AU3 0 JRNL AUTH U.GRADLER,D.SCHWARZ,A.WEGENER,T.EICHHORN,T.M.BANDEIRAS, JRNL AUTH 2 M.C.FREITAS,A.LAMMENS,O.GANICHKIN,M.AUGUSTIN,S.MINGUZZI, JRNL AUTH 3 F.BECKER,J.BOMKE JRNL TITL BIOPHYSICAL AND STRUCTURAL CHARACTERIZATION OF THE IMPACTS JRNL TITL 2 OF MET PHOSPHORYLATION ON TEPOTINIB BINDING. JRNL REF J.BIOL.CHEM. V. 299 05328 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37806493 JRNL DOI 10.1016/J.JBC.2023.105328 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 120.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.4 REMARK 3 NUMBER OF REFLECTIONS : 27348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 1.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 2 REMARK 3 BIN FREE R VALUE : 0.4350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.376 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.176 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4621 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4449 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6266 ; 1.570 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10180 ; 1.235 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 562 ; 6.551 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;35.807 ;22.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 763 ;12.463 ;15.105 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.237 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 701 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5097 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1078 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1056 1348 B 1056 1348 6320 0.050 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292125142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000040 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.257 REMARK 200 RESOLUTION RANGE LOW (A) : 120.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.18200 REMARK 200 R SYM FOR SHELL (I) : 1.18200 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4R1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.4 M NAFORMIATE, 0.1 M MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.56000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 120.05800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.56000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 120.05800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.56000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 120.05800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.56000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 120.05800 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.33800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 120.05800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 58.33800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 120.05800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 58.33800 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 120.05800 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 58.33800 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 120.05800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 58.33800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.56000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 58.33800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.56000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 58.33800 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 69.56000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 58.33800 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 69.56000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1051 REMARK 465 LYS A 1232 REMARK 465 GLU A 1233 REMARK 465 GLU A 1234 REMARK 465 GLU A 1235 REMARK 465 SER A 1236 REMARK 465 VAL A 1237 REMARK 465 HIS A 1238 REMARK 465 ASN A 1239 REMARK 465 LYS A 1240 REMARK 465 THR A 1241 REMARK 465 GLY A 1242 REMARK 465 ALA A 1243 REMARK 465 LYS A 1244 REMARK 465 VAL B 1051 REMARK 465 HIS B 1052 REMARK 465 ILE B 1053 REMARK 465 ASP B 1054 REMARK 465 LEU B 1055 REMARK 465 LYS B 1232 REMARK 465 GLU B 1233 REMARK 465 GLU B 1234 REMARK 465 GLU B 1235 REMARK 465 SER B 1236 REMARK 465 VAL B 1237 REMARK 465 HIS B 1238 REMARK 465 ASN B 1239 REMARK 465 LYS B 1240 REMARK 465 THR B 1241 REMARK 465 GLY B 1242 REMARK 465 ALA B 1243 REMARK 465 LYS B 1244 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 1052 CG ND1 CD2 CE1 NE2 REMARK 480 ASP A 1054 CG OD1 OD2 REMARK 480 SER A 1056 OG REMARK 480 GLU A 1061 CD OE1 OE2 REMARK 480 GLN A 1064 CD OE1 NE2 REMARK 480 ASN A 1100 CG OD1 ND2 REMARK 480 LYS A 1103 CD CE NZ REMARK 480 LYS A 1104 NZ REMARK 480 ILE A 1130 CD1 REMARK 480 GLU A 1150 CD OE1 OE2 REMARK 480 GLU A 1172 CD OE1 OE2 REMARK 480 LYS A 1198 NZ REMARK 480 LYS A 1199 NZ REMARK 480 LYS A 1215 CE NZ REMARK 480 MET A 1229 SD CE REMARK 480 ASP A 1231 CG OD1 OD2 REMARK 480 LEU A 1245 CG CD1 CD2 REMARK 480 LYS A 1259 NZ REMARK 480 GLU A 1306 CD OE1 OE2 REMARK 480 GLU A 1314 CD OE1 OE2 REMARK 480 GLU A 1325 CD OE1 OE2 REMARK 480 GLU B 1061 CD OE1 OE2 REMARK 480 GLN B 1064 CD OE1 NE2 REMARK 480 GLN B 1067 CD OE1 NE2 REMARK 480 ILE B 1077 CD1 REMARK 480 GLU B 1082 CD OE1 OE2 REMARK 480 ARG B 1086 NE CZ NH1 NH2 REMARK 480 LYS B 1103 CE NZ REMARK 480 ILE B 1115 CD1 REMARK 480 ILE B 1118 CD1 REMARK 480 ILE B 1130 CD1 REMARK 480 LYS B 1132 CD CE NZ REMARK 480 SER B 1149 OG REMARK 480 GLU B 1150 CD OE1 OE2 REMARK 480 GLU B 1172 CD OE1 OE2 REMARK 480 LYS B 1193 NZ REMARK 480 LYS B 1198 CE NZ REMARK 480 LYS B 1199 CE NZ REMARK 480 GLU B 1214 CD OE1 OE2 REMARK 480 LYS B 1215 CE NZ REMARK 480 LYS B 1259 CE NZ REMARK 480 GLU B 1314 CD OE1 OE2 REMARK 480 LYS B 1318 NZ REMARK 480 LYS B 1323 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1057 63.87 -101.44 REMARK 500 LEU A1058 -86.67 -107.03 REMARK 500 ASN A1059 109.44 -166.05 REMARK 500 ARG A1114 -23.05 79.79 REMARK 500 THR A1116 -65.19 -103.99 REMARK 500 ASP A1204 40.36 -158.41 REMARK 500 ALA A1221 -160.90 -124.89 REMARK 500 TYR A1307 42.08 -109.50 REMARK 500 THR B1116 -66.11 -97.02 REMARK 500 MET B1131 -46.21 -24.81 REMARK 500 ASP B1204 46.18 -156.16 REMARK 500 ALA B1221 -163.77 -125.67 REMARK 500 TYR B1307 55.88 -115.04 REMARK 500 ILE B1345 24.10 37.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 8AU3 A 1051 1349 UNP P08581 MET_HUMAN 1051 1349 DBREF 8AU3 B 1051 1349 UNP P08581 MET_HUMAN 1051 1349 SEQADV 8AU3 GLU A 1234 UNP P08581 TYR 1234 ENGINEERED MUTATION SEQADV 8AU3 GLU A 1235 UNP P08581 TYR 1235 ENGINEERED MUTATION SEQADV 8AU3 GLU B 1234 UNP P08581 TYR 1234 ENGINEERED MUTATION SEQADV 8AU3 GLU B 1235 UNP P08581 TYR 1235 ENGINEERED MUTATION SEQRES 1 A 299 VAL HIS ILE ASP LEU SER ALA LEU ASN PRO GLU LEU VAL SEQRES 2 A 299 GLN ALA VAL GLN HIS VAL VAL ILE GLY PRO SER SER LEU SEQRES 3 A 299 ILE VAL HIS PHE ASN GLU VAL ILE GLY ARG GLY HIS PHE SEQRES 4 A 299 GLY CYS VAL TYR HIS GLY THR LEU LEU ASP ASN ASP GLY SEQRES 5 A 299 LYS LYS ILE HIS CYS ALA VAL LYS SER LEU ASN ARG ILE SEQRES 6 A 299 THR ASP ILE GLY GLU VAL SER GLN PHE LEU THR GLU GLY SEQRES 7 A 299 ILE ILE MET LYS ASP PHE SER HIS PRO ASN VAL LEU SER SEQRES 8 A 299 LEU LEU GLY ILE CYS LEU ARG SER GLU GLY SER PRO LEU SEQRES 9 A 299 VAL VAL LEU PRO TYR MET LYS HIS GLY ASP LEU ARG ASN SEQRES 10 A 299 PHE ILE ARG ASN GLU THR HIS ASN PRO THR VAL LYS ASP SEQRES 11 A 299 LEU ILE GLY PHE GLY LEU GLN VAL ALA LYS GLY MET LYS SEQRES 12 A 299 TYR LEU ALA SER LYS LYS PHE VAL HIS ARG ASP LEU ALA SEQRES 13 A 299 ALA ARG ASN CYS MET LEU ASP GLU LYS PHE THR VAL LYS SEQRES 14 A 299 VAL ALA ASP PHE GLY LEU ALA ARG ASP MET TYR ASP LYS SEQRES 15 A 299 GLU GLU GLU SER VAL HIS ASN LYS THR GLY ALA LYS LEU SEQRES 16 A 299 PRO VAL LYS TRP MET ALA LEU GLU SER LEU GLN THR GLN SEQRES 17 A 299 LYS PHE THR THR LYS SER ASP VAL TRP SER PHE GLY VAL SEQRES 18 A 299 LEU LEU TRP GLU LEU MET THR ARG GLY ALA PRO PRO TYR SEQRES 19 A 299 PRO ASP VAL ASN THR PHE ASP ILE THR VAL TYR LEU LEU SEQRES 20 A 299 GLN GLY ARG ARG LEU LEU GLN PRO GLU TYR CYS PRO ASP SEQRES 21 A 299 PRO LEU TYR GLU VAL MET LEU LYS CYS TRP HIS PRO LYS SEQRES 22 A 299 ALA GLU MET ARG PRO SER PHE SER GLU LEU VAL SER ARG SEQRES 23 A 299 ILE SER ALA ILE PHE SER THR PHE ILE GLY GLU HIS TYR SEQRES 1 B 299 VAL HIS ILE ASP LEU SER ALA LEU ASN PRO GLU LEU VAL SEQRES 2 B 299 GLN ALA VAL GLN HIS VAL VAL ILE GLY PRO SER SER LEU SEQRES 3 B 299 ILE VAL HIS PHE ASN GLU VAL ILE GLY ARG GLY HIS PHE SEQRES 4 B 299 GLY CYS VAL TYR HIS GLY THR LEU LEU ASP ASN ASP GLY SEQRES 5 B 299 LYS LYS ILE HIS CYS ALA VAL LYS SER LEU ASN ARG ILE SEQRES 6 B 299 THR ASP ILE GLY GLU VAL SER GLN PHE LEU THR GLU GLY SEQRES 7 B 299 ILE ILE MET LYS ASP PHE SER HIS PRO ASN VAL LEU SER SEQRES 8 B 299 LEU LEU GLY ILE CYS LEU ARG SER GLU GLY SER PRO LEU SEQRES 9 B 299 VAL VAL LEU PRO TYR MET LYS HIS GLY ASP LEU ARG ASN SEQRES 10 B 299 PHE ILE ARG ASN GLU THR HIS ASN PRO THR VAL LYS ASP SEQRES 11 B 299 LEU ILE GLY PHE GLY LEU GLN VAL ALA LYS GLY MET LYS SEQRES 12 B 299 TYR LEU ALA SER LYS LYS PHE VAL HIS ARG ASP LEU ALA SEQRES 13 B 299 ALA ARG ASN CYS MET LEU ASP GLU LYS PHE THR VAL LYS SEQRES 14 B 299 VAL ALA ASP PHE GLY LEU ALA ARG ASP MET TYR ASP LYS SEQRES 15 B 299 GLU GLU GLU SER VAL HIS ASN LYS THR GLY ALA LYS LEU SEQRES 16 B 299 PRO VAL LYS TRP MET ALA LEU GLU SER LEU GLN THR GLN SEQRES 17 B 299 LYS PHE THR THR LYS SER ASP VAL TRP SER PHE GLY VAL SEQRES 18 B 299 LEU LEU TRP GLU LEU MET THR ARG GLY ALA PRO PRO TYR SEQRES 19 B 299 PRO ASP VAL ASN THR PHE ASP ILE THR VAL TYR LEU LEU SEQRES 20 B 299 GLN GLY ARG ARG LEU LEU GLN PRO GLU TYR CYS PRO ASP SEQRES 21 B 299 PRO LEU TYR GLU VAL MET LEU LYS CYS TRP HIS PRO LYS SEQRES 22 B 299 ALA GLU MET ARG PRO SER PHE SER GLU LEU VAL SER ARG SEQRES 23 B 299 ILE SER ALA ILE PHE SER THR PHE ILE GLY GLU HIS TYR HET 3E8 A1401 37 HET 3E8 B1401 37 HET PG4 B1402 13 HET PEG B1403 7 HETNAM 3E8 3-[1-(3-{5-[(1-METHYLPIPERIDIN-4-YL)METHOXY]PYRIMIDIN- HETNAM 2 3E8 2-YL}BENZYL)-6-OXO-1,6-DIHYDROPYRIDAZIN-3- HETNAM 3 3E8 YL]BENZONITRILE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 3E8 2(C29 H28 N6 O2) FORMUL 5 PG4 C8 H18 O5 FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *81(H2 O) HELIX 1 AA1 ASN A 1059 GLN A 1067 1 9 HELIX 2 AA2 GLY A 1072 SER A 1074 5 3 HELIX 3 AA3 ASP A 1117 ASP A 1133 1 17 HELIX 4 AA4 ASP A 1164 ASN A 1171 1 8 HELIX 5 AA5 THR A 1177 LYS A 1198 1 22 HELIX 6 AA6 ALA A 1206 ARG A 1208 5 3 HELIX 7 AA7 PHE A 1223 ARG A 1227 5 5 HELIX 8 AA8 LEU A 1245 MET A 1250 5 6 HELIX 9 AA9 ALA A 1251 GLN A 1258 1 8 HELIX 10 AB1 THR A 1261 THR A 1278 1 18 HELIX 11 AB2 ASN A 1288 PHE A 1290 5 3 HELIX 12 AB3 ASP A 1291 GLN A 1298 1 8 HELIX 13 AB4 PRO A 1309 TRP A 1320 1 12 HELIX 14 AB5 LYS A 1323 ARG A 1327 5 5 HELIX 15 AB6 SER A 1329 SER A 1342 1 14 HELIX 16 AB7 ASN B 1059 HIS B 1068 1 10 HELIX 17 AB8 GLY B 1072 SER B 1074 5 3 HELIX 18 AB9 ASP B 1117 GLU B 1120 5 4 HELIX 19 AC1 VAL B 1121 ILE B 1129 1 9 HELIX 20 AC2 ILE B 1130 PHE B 1134 5 5 HELIX 21 AC3 ASP B 1164 ASN B 1171 1 8 HELIX 22 AC4 THR B 1177 LYS B 1198 1 22 HELIX 23 AC5 ALA B 1206 ARG B 1208 5 3 HELIX 24 AC6 PHE B 1223 ARG B 1227 5 5 HELIX 25 AC7 LEU B 1245 MET B 1250 5 6 HELIX 26 AC8 ALA B 1251 GLN B 1258 1 8 HELIX 27 AC9 THR B 1261 THR B 1278 1 18 HELIX 28 AD1 ASP B 1291 GLN B 1298 1 8 HELIX 29 AD2 PRO B 1309 TRP B 1320 1 12 HELIX 30 AD3 LYS B 1323 ARG B 1327 5 5 HELIX 31 AD4 SER B 1329 SER B 1342 1 14 SHEET 1 AA1 6 GLY A1144 CYS A1146 0 SHEET 2 AA1 6 LEU A1154 PRO A1158 -1 O VAL A1156 N GLY A1144 SHEET 3 AA1 6 LYS A1104 SER A1111 -1 N ALA A1108 O LEU A1157 SHEET 4 AA1 6 CYS A1091 LEU A1098 -1 N LEU A1097 O ILE A1105 SHEET 5 AA1 6 LEU A1076 GLY A1087 -1 N HIS A1079 O HIS A1094 SHEET 6 AA1 6 TYR A1230 ASP A1231 -1 O ASP A1231 N ARG A1086 SHEET 1 AA2 2 CYS A1210 LEU A1212 0 SHEET 2 AA2 2 VAL A1218 VAL A1220 -1 O LYS A1219 N MET A1211 SHEET 1 AA3 5 LEU B1076 ARG B1086 0 SHEET 2 AA3 5 CYS B1091 LEU B1098 -1 O HIS B1094 N HIS B1079 SHEET 3 AA3 5 LYS B1104 SER B1111 -1 O VAL B1109 N TYR B1093 SHEET 4 AA3 5 LEU B1154 PRO B1158 -1 O LEU B1157 N ALA B1108 SHEET 5 AA3 5 GLY B1144 CYS B1146 -1 N GLY B1144 O VAL B1156 SHEET 1 AA4 2 CYS B1210 LEU B1212 0 SHEET 2 AA4 2 VAL B1218 VAL B1220 -1 O LYS B1219 N MET B1211 CRYST1 116.676 139.120 240.116 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008571 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004165 0.00000