HEADER UNKNOWN FUNCTION 26-AUG-22 8AVJ TITLE STRUCTURE OF SHORT APO AGROAVIDIN WITH THE HOEF TAIL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGROAVCH; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM SP. AAP43; SOURCE 3 ORGANISM_TAXID: 1523420; SOURCE 4 GENE: IP76_08565; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AVIDIN, STREPTAVIDIN, HIGH-AFFINITY SYSTEMS, DIMERIC AVIDINS, KEYWDS 2 MULTIMERS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR O.LIVNAH,J.BANA,J.WARWAR REVDAT 3 07-FEB-24 8AVJ 1 REMARK REVDAT 2 02-AUG-23 8AVJ 1 JRNL REVDAT 1 12-APR-23 8AVJ 0 JRNL AUTH J.BANA,J.WARWAR,E.A.BAYER,O.LIVNAH JRNL TITL SELF-ASSEMBLY OF A DIMERIC AVIDIN INTO UNIQUE HIGHER-ORDER JRNL TITL 2 OLIGOMERS. JRNL REF FEBS J. V. 290 3563 2023 JRNL REFN ISSN 1742-464X JRNL PMID 36853192 JRNL DOI 10.1111/FEBS.16764 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 64372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 258 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.843 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4903 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4415 ; 0.002 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6652 ; 1.778 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10121 ; 1.425 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 640 ; 7.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;31.299 ;22.558 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 695 ;14.086 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;23.935 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5695 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1185 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2575 ; 4.207 ; 4.540 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2574 ; 4.203 ; 4.539 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3210 ; 5.684 ; 6.785 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3211 ; 5.685 ; 6.787 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2328 ; 4.947 ; 4.869 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2329 ; 4.946 ; 4.870 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3443 ; 6.976 ; 7.089 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5195 ; 8.252 ;51.020 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5196 ; 8.252 ;51.029 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8AVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292125202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.965 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.9980 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8ASU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% ETHYLENE GLYCOL 0.05M ACETIC ACID REMARK 280 PH 3.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.59267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.29633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.29633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.59267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -98.59267 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 309 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 314 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 333 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 MET E 1 REMARK 465 THR E 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 330 O HOH C 323 6654 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 92 C VAL A 92 O 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY D 58 C - N - CA ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 88 112.81 -29.04 REMARK 500 PHE C 88 125.84 -33.43 REMARK 500 HIS D 57 -66.48 -139.86 REMARK 500 TRP E 67 54.42 -90.06 REMARK 500 ILE E 71 -62.38 -121.57 REMARK 500 ALA E 106 39.25 -88.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8AST RELATED DB: PDB REMARK 900 RELATED ID: 8AN6 RELATED DB: PDB REMARK 900 RELATED ID: 8ASR RELATED DB: PDB REMARK 900 RELATED ID: 8ASS RELATED DB: PDB REMARK 900 RELATED ID: 8ASU RELATED DB: PDB DBREF1 8AVJ A 2 121 UNP A0A0N1ABZ3_9HYPH DBREF2 8AVJ A A0A0N1ABZ3 29 148 DBREF1 8AVJ B 2 121 UNP A0A0N1ABZ3_9HYPH DBREF2 8AVJ B A0A0N1ABZ3 29 148 DBREF1 8AVJ C 2 121 UNP A0A0N1ABZ3_9HYPH DBREF2 8AVJ C A0A0N1ABZ3 29 148 DBREF1 8AVJ D 2 121 UNP A0A0N1ABZ3_9HYPH DBREF2 8AVJ D A0A0N1ABZ3 29 148 DBREF1 8AVJ E 2 121 UNP A0A0N1ABZ3_9HYPH DBREF2 8AVJ E A0A0N1ABZ3 29 148 SEQADV 8AVJ MET A 1 UNP A0A0N1ABZ INITIATING METHIONINE SEQADV 8AVJ TYR A 36 UNP A0A0N1ABZ PHE 63 CONFLICT SEQADV 8AVJ ALA A 122 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR A 123 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ VAL A 124 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER A 125 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU A 126 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER A 127 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU A 128 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU A 129 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR A 130 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU A 131 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ MET B 1 UNP A0A0N1ABZ INITIATING METHIONINE SEQADV 8AVJ TYR B 36 UNP A0A0N1ABZ PHE 63 CONFLICT SEQADV 8AVJ ALA B 122 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR B 123 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ VAL B 124 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER B 125 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU B 126 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER B 127 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU B 128 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU B 129 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR B 130 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU B 131 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ MET C 1 UNP A0A0N1ABZ INITIATING METHIONINE SEQADV 8AVJ TYR C 36 UNP A0A0N1ABZ PHE 63 CONFLICT SEQADV 8AVJ ALA C 122 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR C 123 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ VAL C 124 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER C 125 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU C 126 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER C 127 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU C 128 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU C 129 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR C 130 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU C 131 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ MET D 1 UNP A0A0N1ABZ INITIATING METHIONINE SEQADV 8AVJ TYR D 36 UNP A0A0N1ABZ PHE 63 CONFLICT SEQADV 8AVJ ALA D 122 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR D 123 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ VAL D 124 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER D 125 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU D 126 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER D 127 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU D 128 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU D 129 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR D 130 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU D 131 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ MET E 1 UNP A0A0N1ABZ INITIATING METHIONINE SEQADV 8AVJ TYR E 36 UNP A0A0N1ABZ PHE 63 CONFLICT SEQADV 8AVJ ALA E 122 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR E 123 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ VAL E 124 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER E 125 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU E 126 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ SER E 127 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU E 128 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ LEU E 129 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ THR E 130 UNP A0A0N1ABZ EXPRESSION TAG SEQADV 8AVJ GLU E 131 UNP A0A0N1ABZ EXPRESSION TAG SEQRES 1 A 131 MET THR ASP PHE ASP SER LEU SER GLY THR SER THR THR SEQRES 2 A 131 TRP VAL ASN GLU LEU GLY SER VAL MET THR ILE ASP VAL SEQRES 3 A 131 ASP ARG LYS GLY GLY VAL THR GLY TYR TYR VAL ASN ASN SEQRES 4 A 131 ALA PRO GLY THR GLY CYS ARG GLY LEU PRO TYR ASP LEU SEQRES 5 A 131 SER GLY HIS ALA HIS GLY SER THR ILE ALA PHE SER VAL SEQRES 6 A 131 VAL TRP SER ASN GLY ILE ALA ASP CYS ARG SER ALA THR SEQRES 7 A 131 SER TRP ALA GLY TYR ALA ARG LYS THR PHE GLY GLY GLY SEQRES 8 A 131 VAL GLN ILE VAL THR GLN TRP SER LEU ALA PHE VAL GLY SEQRES 9 A 131 LYS ALA GLY GLY LYS ILE GLU THR GLY GLN ASN VAL PHE SEQRES 10 A 131 THR TYR GLN ALA ALA THR VAL SER GLU SER LEU LEU THR SEQRES 11 A 131 GLU SEQRES 1 B 131 MET THR ASP PHE ASP SER LEU SER GLY THR SER THR THR SEQRES 2 B 131 TRP VAL ASN GLU LEU GLY SER VAL MET THR ILE ASP VAL SEQRES 3 B 131 ASP ARG LYS GLY GLY VAL THR GLY TYR TYR VAL ASN ASN SEQRES 4 B 131 ALA PRO GLY THR GLY CYS ARG GLY LEU PRO TYR ASP LEU SEQRES 5 B 131 SER GLY HIS ALA HIS GLY SER THR ILE ALA PHE SER VAL SEQRES 6 B 131 VAL TRP SER ASN GLY ILE ALA ASP CYS ARG SER ALA THR SEQRES 7 B 131 SER TRP ALA GLY TYR ALA ARG LYS THR PHE GLY GLY GLY SEQRES 8 B 131 VAL GLN ILE VAL THR GLN TRP SER LEU ALA PHE VAL GLY SEQRES 9 B 131 LYS ALA GLY GLY LYS ILE GLU THR GLY GLN ASN VAL PHE SEQRES 10 B 131 THR TYR GLN ALA ALA THR VAL SER GLU SER LEU LEU THR SEQRES 11 B 131 GLU SEQRES 1 C 131 MET THR ASP PHE ASP SER LEU SER GLY THR SER THR THR SEQRES 2 C 131 TRP VAL ASN GLU LEU GLY SER VAL MET THR ILE ASP VAL SEQRES 3 C 131 ASP ARG LYS GLY GLY VAL THR GLY TYR TYR VAL ASN ASN SEQRES 4 C 131 ALA PRO GLY THR GLY CYS ARG GLY LEU PRO TYR ASP LEU SEQRES 5 C 131 SER GLY HIS ALA HIS GLY SER THR ILE ALA PHE SER VAL SEQRES 6 C 131 VAL TRP SER ASN GLY ILE ALA ASP CYS ARG SER ALA THR SEQRES 7 C 131 SER TRP ALA GLY TYR ALA ARG LYS THR PHE GLY GLY GLY SEQRES 8 C 131 VAL GLN ILE VAL THR GLN TRP SER LEU ALA PHE VAL GLY SEQRES 9 C 131 LYS ALA GLY GLY LYS ILE GLU THR GLY GLN ASN VAL PHE SEQRES 10 C 131 THR TYR GLN ALA ALA THR VAL SER GLU SER LEU LEU THR SEQRES 11 C 131 GLU SEQRES 1 D 131 MET THR ASP PHE ASP SER LEU SER GLY THR SER THR THR SEQRES 2 D 131 TRP VAL ASN GLU LEU GLY SER VAL MET THR ILE ASP VAL SEQRES 3 D 131 ASP ARG LYS GLY GLY VAL THR GLY TYR TYR VAL ASN ASN SEQRES 4 D 131 ALA PRO GLY THR GLY CYS ARG GLY LEU PRO TYR ASP LEU SEQRES 5 D 131 SER GLY HIS ALA HIS GLY SER THR ILE ALA PHE SER VAL SEQRES 6 D 131 VAL TRP SER ASN GLY ILE ALA ASP CYS ARG SER ALA THR SEQRES 7 D 131 SER TRP ALA GLY TYR ALA ARG LYS THR PHE GLY GLY GLY SEQRES 8 D 131 VAL GLN ILE VAL THR GLN TRP SER LEU ALA PHE VAL GLY SEQRES 9 D 131 LYS ALA GLY GLY LYS ILE GLU THR GLY GLN ASN VAL PHE SEQRES 10 D 131 THR TYR GLN ALA ALA THR VAL SER GLU SER LEU LEU THR SEQRES 11 D 131 GLU SEQRES 1 E 131 MET THR ASP PHE ASP SER LEU SER GLY THR SER THR THR SEQRES 2 E 131 TRP VAL ASN GLU LEU GLY SER VAL MET THR ILE ASP VAL SEQRES 3 E 131 ASP ARG LYS GLY GLY VAL THR GLY TYR TYR VAL ASN ASN SEQRES 4 E 131 ALA PRO GLY THR GLY CYS ARG GLY LEU PRO TYR ASP LEU SEQRES 5 E 131 SER GLY HIS ALA HIS GLY SER THR ILE ALA PHE SER VAL SEQRES 6 E 131 VAL TRP SER ASN GLY ILE ALA ASP CYS ARG SER ALA THR SEQRES 7 E 131 SER TRP ALA GLY TYR ALA ARG LYS THR PHE GLY GLY GLY SEQRES 8 E 131 VAL GLN ILE VAL THR GLN TRP SER LEU ALA PHE VAL GLY SEQRES 9 E 131 LYS ALA GLY GLY LYS ILE GLU THR GLY GLN ASN VAL PHE SEQRES 10 E 131 THR TYR GLN ALA ALA THR VAL SER GLU SER LEU LEU THR SEQRES 11 E 131 GLU HET EDO A 201 4 HET EDO A 202 4 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO C 201 4 HET EDO C 202 4 HET EDO C 203 4 HET EDO C 204 4 HET EDO E 201 4 HET EDO E 202 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 6 EDO 11(C2 H6 O2) FORMUL 17 HOH *175(H2 O) HELIX 1 AA1 ASP A 3 SER A 8 5 6 HELIX 2 AA2 PHE B 4 SER B 8 5 5 HELIX 3 AA3 ASP C 3 SER C 8 5 6 HELIX 4 AA4 ASP D 3 SER D 8 5 6 HELIX 5 AA5 ASP E 3 SER E 8 5 6 HELIX 6 AA6 PHE E 88 GLY E 90 5 3 SHEET 1 AA110 THR E 123 VAL E 124 0 SHEET 2 AA110 ALA A 72 THR A 87 1 N ASP A 73 O THR E 123 SHEET 3 AA110 GLY A 91 GLY A 104 -1 O GLN A 97 N ALA A 81 SHEET 4 AA110 GLY A 107 GLN A 120 -1 O ASN A 115 N THR A 96 SHEET 5 AA110 THR A 10 ASN A 16 -1 N VAL A 15 O THR A 118 SHEET 6 AA110 VAL A 21 VAL A 26 -1 O ILE A 24 N THR A 12 SHEET 7 AA110 GLY A 31 VAL A 37 -1 O THR A 33 N ASP A 25 SHEET 8 AA110 PRO A 49 HIS A 57 -1 O GLY A 54 N VAL A 32 SHEET 9 AA110 THR A 60 SER A 68 -1 O THR A 60 N HIS A 57 SHEET 10 AA110 ALA A 72 THR A 87 -1 O TRP A 80 N PHE A 63 SHEET 1 AA2 2 THR A 123 VAL A 124 0 SHEET 2 AA2 2 ALA E 72 ASP E 73 1 O ASP E 73 N THR A 123 SHEET 1 AA3 9 THR B 10 VAL B 15 0 SHEET 2 AA3 9 VAL B 21 VAL B 26 -1 O MET B 22 N TRP B 14 SHEET 3 AA3 9 GLY B 31 VAL B 37 -1 O VAL B 37 N VAL B 21 SHEET 4 AA3 9 PRO B 49 HIS B 57 -1 O TYR B 50 N TYR B 36 SHEET 5 AA3 9 THR B 60 SER B 68 -1 O THR B 60 N HIS B 57 SHEET 6 AA3 9 ASP B 73 THR B 87 -1 O TRP B 80 N PHE B 63 SHEET 7 AA3 9 GLY B 91 GLY B 104 -1 O VAL B 95 N TYR B 83 SHEET 8 AA3 9 GLY B 107 GLN B 120 -1 O PHE B 117 N ILE B 94 SHEET 9 AA3 9 THR B 10 VAL B 15 -1 N VAL B 15 O THR B 118 SHEET 1 AA410 THR D 123 VAL D 124 0 SHEET 2 AA410 ALA C 72 THR C 87 1 N ASP C 73 O THR D 123 SHEET 3 AA410 GLY C 91 GLY C 104 -1 O GLN C 93 N ARG C 85 SHEET 4 AA410 GLY C 107 GLN C 120 -1 O GLY C 113 N TRP C 98 SHEET 5 AA410 THR C 10 VAL C 15 -1 N VAL C 15 O THR C 118 SHEET 6 AA410 VAL C 21 VAL C 26 -1 O MET C 22 N TRP C 14 SHEET 7 AA410 GLY C 31 VAL C 37 -1 O VAL C 37 N VAL C 21 SHEET 8 AA410 TYR C 50 HIS C 57 -1 O GLY C 54 N VAL C 32 SHEET 9 AA410 THR C 60 SER C 68 -1 O ALA C 62 N HIS C 55 SHEET 10 AA410 ALA C 72 THR C 87 -1 O TRP C 80 N PHE C 63 SHEET 1 AA5 2 THR C 123 VAL C 124 0 SHEET 2 AA5 2 ALA D 72 ASP D 73 1 O ASP D 73 N THR C 123 SHEET 1 AA6 9 THR D 10 ASN D 16 0 SHEET 2 AA6 9 VAL D 21 VAL D 26 -1 O MET D 22 N TRP D 14 SHEET 3 AA6 9 GLY D 31 VAL D 37 -1 O THR D 33 N ASP D 25 SHEET 4 AA6 9 TYR D 50 ALA D 56 -1 O TYR D 50 N TYR D 36 SHEET 5 AA6 9 THR D 60 VAL D 66 -1 O SER D 64 N SER D 53 SHEET 6 AA6 9 ALA D 77 THR D 87 -1 O TRP D 80 N PHE D 63 SHEET 7 AA6 9 GLY D 91 GLY D 104 -1 O VAL D 95 N TYR D 83 SHEET 8 AA6 9 GLY D 107 GLN D 120 -1 O TYR D 119 N VAL D 92 SHEET 9 AA6 9 THR D 10 ASN D 16 -1 N THR D 13 O GLN D 120 SHEET 1 AA7 9 THR E 10 ASN E 16 0 SHEET 2 AA7 9 VAL E 21 VAL E 26 -1 O MET E 22 N TRP E 14 SHEET 3 AA7 9 GLY E 31 VAL E 37 -1 O THR E 33 N ASP E 25 SHEET 4 AA7 9 TYR E 50 HIS E 57 -1 O TYR E 50 N TYR E 36 SHEET 5 AA7 9 THR E 60 VAL E 66 -1 O ALA E 62 N HIS E 55 SHEET 6 AA7 9 SER E 76 LYS E 86 -1 O TRP E 80 N PHE E 63 SHEET 7 AA7 9 VAL E 92 GLY E 104 -1 O ALA E 101 N ALA E 77 SHEET 8 AA7 9 GLY E 107 GLN E 120 -1 O GLU E 111 N LEU E 100 SHEET 9 AA7 9 THR E 10 ASN E 16 -1 N VAL E 15 O THR E 118 SSBOND 1 CYS A 45 CYS A 74 1555 1555 2.25 SSBOND 2 CYS B 45 CYS B 74 1555 1555 2.29 SSBOND 3 CYS C 45 CYS C 74 1555 1555 2.24 SSBOND 4 CYS D 45 CYS D 74 1555 1555 2.21 SSBOND 5 CYS E 45 CYS E 74 1555 1555 2.17 CRYST1 116.697 116.697 147.889 90.00 90.00 120.00 P 32 2 1 30 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008569 0.004947 0.000000 0.00000 SCALE2 0.000000 0.009895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006762 0.00000