HEADER VIRUS 01-SEP-22 8AY5 TITLE HUMAN RHINOVIRUS 2 EMPTY PARTICLE IN SITU COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P1D,VIRION PROTEIN 1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAPSID PROTEIN VP2; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: P1B,VIRION PROTEIN 2; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VP3; COMPND 11 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHINOVIRUS A2; SOURCE 3 ORGANISM_TAXID: 12130; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: RHINOVIRUS A2; SOURCE 6 ORGANISM_TAXID: 12130; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: RHINOVIRUS A2; SOURCE 9 ORGANISM_TAXID: 12130 KEYWDS HUMAN RHINOVIRUS 2, EMPTY PARTICLE, IN SITU, CRYO-EM., VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR A.ISHEMGULOVA,L.MUKHAMEDOVA,Z.TREBICHALSKA,P.PAYNE,L.SMERDOVA, AUTHOR 2 J.MORAVCOVA,D.HREBIK,D.BUCHTA,K.SKUBNIK,T.FUZIK,J.NOVACEK,P.PLEVKA REVDAT 1 13-SEP-23 8AY5 0 JRNL AUTH A.ISHEMGULOVA JRNL TITL ENDOSOME RUPTURE ENABLES ENTEROVIRUSES TO INFECT CELLS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 7.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOLO, RELION, GCTF, UCSF CHIMERA, REMARK 3 RELION, RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.100 REMARK 3 NUMBER OF PARTICLES : 332 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8AY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125340. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RHINOVIRUS A2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 180-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.309017 -0.809017 479.84104 REMARK 350 BIOMT2 2 -0.309017 0.809017 -0.500000 296.55807 REMARK 350 BIOMT3 2 0.809017 0.500000 0.309017 -183.28297 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 593.11615 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 593.11615 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 -0.309017 -0.809017 776.39912 REMARK 350 BIOMT2 4 0.309017 0.809017 -0.500000 113.27510 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 296.55807 REMARK 350 BIOMT1 5 -0.500000 0.309017 -0.809017 593.11615 REMARK 350 BIOMT2 5 0.309017 -0.809017 -0.500000 593.11615 REMARK 350 BIOMT3 5 -0.809017 -0.500000 0.309017 593.11615 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 776.39912 REMARK 350 BIOMT2 6 0.809017 -0.500000 0.309017 113.27510 REMARK 350 BIOMT3 6 -0.500000 -0.309017 0.809017 296.55807 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 479.84104 REMARK 350 BIOMT2 7 -0.500000 -0.309017 0.809017 296.55807 REMARK 350 BIOMT3 7 0.309017 0.809017 0.500000 -183.28297 REMARK 350 BIOMT1 8 0.500000 0.309017 -0.809017 296.55807 REMARK 350 BIOMT2 8 0.309017 0.809017 0.500000 -183.28297 REMARK 350 BIOMT3 8 0.809017 -0.500000 0.309017 113.27510 REMARK 350 BIOMT1 9 -0.500000 0.309017 -0.809017 593.11615 REMARK 350 BIOMT2 9 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 9 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 10 0.000000 0.000000 -1.000000 593.11615 REMARK 350 BIOMT2 10 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 -1.000000 0.000000 593.11615 REMARK 350 BIOMT1 11 -0.500000 -0.309017 -0.809017 776.39912 REMARK 350 BIOMT2 11 -0.309017 -0.809017 0.500000 479.84104 REMARK 350 BIOMT3 11 -0.809017 0.500000 0.309017 296.55807 REMARK 350 BIOMT1 12 -0.809017 -0.500000 0.309017 593.11615 REMARK 350 BIOMT2 12 -0.500000 0.309017 -0.809017 593.11615 REMARK 350 BIOMT3 12 0.309017 -0.809017 -0.500000 593.11615 REMARK 350 BIOMT1 13 0.000000 -1.000000 0.000000 593.11615 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 13 -1.000000 0.000000 0.000000 593.11615 REMARK 350 BIOMT1 14 -0.809017 0.500000 0.309017 296.55807 REMARK 350 BIOMT2 14 0.500000 0.309017 0.809017 -183.28297 REMARK 350 BIOMT3 14 0.309017 0.809017 -0.500000 113.27510 REMARK 350 BIOMT1 15 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 15 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 15 0.309017 -0.809017 -0.500000 593.11615 REMARK 350 BIOMT1 16 -0.309017 0.809017 -0.500000 296.55807 REMARK 350 BIOMT2 16 0.809017 0.500000 0.309017 -183.28297 REMARK 350 BIOMT3 16 0.500000 -0.309017 -0.809017 479.84104 REMARK 350 BIOMT1 17 0.500000 -0.309017 -0.809017 479.84104 REMARK 350 BIOMT2 17 0.309017 -0.809017 0.500000 296.55807 REMARK 350 BIOMT3 17 -0.809017 -0.500000 -0.309017 776.39912 REMARK 350 BIOMT1 18 -0.809017 -0.500000 -0.309017 776.39912 REMARK 350 BIOMT2 18 -0.500000 0.309017 0.809017 113.27510 REMARK 350 BIOMT3 18 -0.309017 0.809017 -0.500000 296.55807 REMARK 350 BIOMT1 19 -0.309017 -0.809017 0.500000 479.84104 REMARK 350 BIOMT2 19 -0.809017 0.500000 0.309017 296.55807 REMARK 350 BIOMT3 19 -0.500000 -0.309017 -0.809017 776.39912 REMARK 350 BIOMT1 20 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 0.309017 -0.809017 593.11615 REMARK 350 BIOMT1 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 -1.000000 0.000000 593.11615 REMARK 350 BIOMT3 21 0.000000 0.000000 -1.000000 593.11615 REMARK 350 BIOMT1 22 0.309017 0.809017 -0.500000 113.27510 REMARK 350 BIOMT2 22 0.809017 -0.500000 -0.309017 296.55807 REMARK 350 BIOMT3 22 -0.500000 -0.309017 -0.809017 776.39912 REMARK 350 BIOMT1 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 23 0.000000 0.000000 -1.000000 593.11615 REMARK 350 BIOMT3 23 -1.000000 0.000000 0.000000 593.11615 REMARK 350 BIOMT1 24 0.309017 -0.809017 -0.500000 593.11615 REMARK 350 BIOMT2 24 -0.809017 -0.500000 0.309017 593.11615 REMARK 350 BIOMT3 24 -0.500000 0.309017 -0.809017 593.11615 REMARK 350 BIOMT1 25 -1.000000 0.000000 0.000000 593.11615 REMARK 350 BIOMT2 25 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 25 0.000000 0.000000 -1.000000 593.11615 REMARK 350 BIOMT1 26 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 26 -0.500000 0.309017 -0.809017 593.11615 REMARK 350 BIOMT3 26 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 27 0.000000 -1.000000 0.000000 593.11615 REMARK 350 BIOMT2 27 0.000000 0.000000 -1.000000 593.11615 REMARK 350 BIOMT3 27 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 28 -0.809017 0.500000 0.309017 296.55807 REMARK 350 BIOMT2 28 -0.500000 -0.309017 -0.809017 776.39912 REMARK 350 BIOMT3 28 -0.309017 -0.809017 0.500000 479.84104 REMARK 350 BIOMT1 29 -0.500000 -0.309017 0.809017 296.55807 REMARK 350 BIOMT2 29 -0.309017 -0.809017 -0.500000 776.39912 REMARK 350 BIOMT3 29 0.809017 -0.500000 0.309017 113.27510 REMARK 350 BIOMT1 30 0.309017 0.809017 0.500000 -183.28297 REMARK 350 BIOMT2 30 -0.809017 0.500000 -0.309017 479.84104 REMARK 350 BIOMT3 30 -0.500000 -0.309017 0.809017 296.55807 REMARK 350 BIOMT1 31 0.809017 -0.500000 0.309017 113.27510 REMARK 350 BIOMT2 31 0.500000 0.309017 -0.809017 296.55807 REMARK 350 BIOMT3 31 0.309017 0.809017 0.500000 -183.28297 REMARK 350 BIOMT1 32 0.809017 0.500000 0.309017 -183.28297 REMARK 350 BIOMT2 32 0.500000 -0.309017 -0.809017 479.84104 REMARK 350 BIOMT3 32 -0.309017 0.809017 -0.500000 296.55807 REMARK 350 BIOMT1 33 0.309017 -0.809017 0.500000 296.55807 REMARK 350 BIOMT2 33 -0.809017 -0.500000 -0.309017 776.39912 REMARK 350 BIOMT3 33 0.500000 -0.309017 -0.809017 479.84104 REMARK 350 BIOMT1 34 0.809017 -0.500000 -0.309017 296.55807 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 776.39912 REMARK 350 BIOMT3 34 0.309017 0.809017 -0.500000 113.27510 REMARK 350 BIOMT1 35 -0.500000 0.309017 0.809017 113.27510 REMARK 350 BIOMT2 35 -0.309017 0.809017 -0.500000 296.55807 REMARK 350 BIOMT3 35 -0.809017 -0.500000 -0.309017 776.39912 REMARK 350 BIOMT1 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 36 -1.000000 0.000000 0.000000 593.11615 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 593.11615 REMARK 350 BIOMT1 37 0.500000 0.309017 0.809017 -183.28297 REMARK 350 BIOMT2 37 0.309017 0.809017 -0.500000 113.27510 REMARK 350 BIOMT3 37 -0.809017 0.500000 0.309017 296.55807 REMARK 350 BIOMT1 38 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 38 0.309017 -0.809017 -0.500000 593.11615 REMARK 350 BIOMT3 38 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 39 0.309017 0.809017 0.500000 -183.28297 REMARK 350 BIOMT2 39 0.809017 -0.500000 0.309017 113.27510 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 296.55807 REMARK 350 BIOMT1 40 0.809017 -0.500000 0.309017 113.27510 REMARK 350 BIOMT2 40 -0.500000 -0.309017 0.809017 296.55807 REMARK 350 BIOMT3 40 -0.309017 -0.809017 -0.500000 776.39912 REMARK 350 BIOMT1 41 -0.500000 -0.309017 0.809017 296.55807 REMARK 350 BIOMT2 41 0.309017 0.809017 0.500000 -183.28297 REMARK 350 BIOMT3 41 -0.809017 0.500000 -0.309017 479.84104 REMARK 350 BIOMT1 42 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 42 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 42 -0.809017 -0.500000 0.309017 593.11615 REMARK 350 BIOMT1 43 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 43 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 43 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 44 0.500000 0.309017 0.809017 -183.28297 REMARK 350 BIOMT2 44 -0.309017 -0.809017 0.500000 479.84104 REMARK 350 BIOMT3 44 0.809017 -0.500000 -0.309017 296.55807 REMARK 350 BIOMT1 45 0.500000 0.309017 -0.809017 296.55807 REMARK 350 BIOMT2 45 -0.309017 -0.809017 -0.500000 776.39912 REMARK 350 BIOMT3 45 -0.809017 0.500000 -0.309017 479.84104 REMARK 350 BIOMT1 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.809017 -0.500000 -0.309017 296.55807 REMARK 350 BIOMT2 47 0.500000 0.309017 0.809017 -183.28297 REMARK 350 BIOMT3 47 -0.309017 -0.809017 0.500000 479.84104 REMARK 350 BIOMT1 48 -0.809017 -0.500000 0.309017 593.11615 REMARK 350 BIOMT2 48 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 49 0.309017 -0.809017 0.500000 296.55807 REMARK 350 BIOMT2 49 0.809017 0.500000 0.309017 -183.28297 REMARK 350 BIOMT3 49 -0.500000 0.309017 0.809017 113.27510 REMARK 350 BIOMT1 50 -0.500000 0.309017 0.809017 113.27510 REMARK 350 BIOMT2 50 0.309017 -0.809017 0.500000 296.55807 REMARK 350 BIOMT3 50 0.809017 0.500000 0.309017 -183.28297 REMARK 350 BIOMT1 51 0.809017 0.500000 0.309017 -183.28297 REMARK 350 BIOMT2 51 -0.500000 0.309017 0.809017 113.27510 REMARK 350 BIOMT3 51 0.309017 -0.809017 0.500000 296.55807 REMARK 350 BIOMT1 52 0.309017 0.809017 -0.500000 113.27510 REMARK 350 BIOMT2 52 -0.809017 0.500000 0.309017 296.55807 REMARK 350 BIOMT3 52 0.500000 0.309017 0.809017 -183.28297 REMARK 350 BIOMT1 53 0.309017 -0.809017 -0.500000 593.11615 REMARK 350 BIOMT2 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000000 593.11615 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 593.11615 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 55 -0.309017 -0.809017 0.500000 479.84104 REMARK 350 BIOMT2 55 0.809017 -0.500000 -0.309017 296.55807 REMARK 350 BIOMT3 55 0.500000 0.309017 0.809017 -183.28297 REMARK 350 BIOMT1 56 -0.309017 -0.809017 -0.500000 776.39912 REMARK 350 BIOMT2 56 -0.809017 0.500000 -0.309017 479.84104 REMARK 350 BIOMT3 56 0.500000 0.309017 -0.809017 296.55807 REMARK 350 BIOMT1 57 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 57 -0.809017 -0.500000 0.309017 593.11615 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -0.809017 0.500000 -0.309017 479.84104 REMARK 350 BIOMT2 58 0.500000 0.309017 -0.809017 296.55807 REMARK 350 BIOMT3 58 -0.309017 -0.809017 -0.500000 776.39912 REMARK 350 BIOMT1 59 -0.809017 -0.500000 -0.309017 776.39912 REMARK 350 BIOMT2 59 0.500000 -0.309017 -0.809017 479.84104 REMARK 350 BIOMT3 59 0.309017 -0.809017 0.500000 296.55807 REMARK 350 BIOMT1 60 -0.309017 0.809017 -0.500000 296.55807 REMARK 350 BIOMT2 60 -0.809017 -0.500000 -0.309017 776.39912 REMARK 350 BIOMT3 60 -0.500000 0.309017 0.809017 113.27510 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 119 OG REMARK 470 ARG B 1 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 50 HG SER C 213 1.56 REMARK 500 OE2 GLU A 240 HG SER C 232 1.57 REMARK 500 OE1 GLU A 24 HG SER C 161 1.57 REMARK 500 OE2 GLU A 108 HG1 THR A 110 1.57 REMARK 500 HH TYR A 102 OE2 GLU B 118 1.60 REMARK 500 HH TYR B 161 OE1 GLU C 65 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 254 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 51 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 143 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 114 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 207 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 113.67 -36.70 REMARK 500 SER A 45 43.66 -156.28 REMARK 500 SER A 55 -63.96 -91.14 REMARK 500 SER A 149 75.63 -151.97 REMARK 500 THR A 151 -23.92 -150.81 REMARK 500 ASP A 188 52.81 73.01 REMARK 500 ASN A 197 36.56 -96.60 REMARK 500 CYS A 232 100.46 42.48 REMARK 500 GLU A 240 141.71 -37.60 REMARK 500 THR A 242 -38.78 -151.70 REMARK 500 ARG A 243 43.25 -153.82 REMARK 500 ALA A 244 -102.18 39.10 REMARK 500 PHE A 249 -24.21 -148.30 REMARK 500 ASP B 9 -1.50 -159.14 REMARK 500 TYR B 24 17.84 54.48 REMARK 500 ASP B 46 -125.11 50.27 REMARK 500 SER B 49 -22.75 -146.78 REMARK 500 CYS B 101 35.76 -156.52 REMARK 500 PRO B 117 -136.31 -66.38 REMARK 500 HIS B 137 71.04 -117.41 REMARK 500 ASN B 164 25.79 49.88 REMARK 500 PHE B 165 16.52 54.57 REMARK 500 LEU B 170 171.08 -57.69 REMARK 500 THR B 174 -6.39 -58.46 REMARK 500 ARG B 246 -158.96 -156.00 REMARK 500 TRP C 27 -10.79 63.18 REMARK 500 ASN C 56 51.54 -96.29 REMARK 500 ASN C 63 35.48 -80.96 REMARK 500 ARG C 86 -175.48 -63.45 REMARK 500 PRO C 136 -154.50 -77.30 REMARK 500 ASP C 156 94.07 -67.83 REMARK 500 TYR C 192 98.03 -68.79 REMARK 500 GLN C 201 15.98 49.59 REMARK 500 PRO C 204 43.50 -79.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 180 0.10 SIDE CHAIN REMARK 500 TYR A 241 0.07 SIDE CHAIN REMARK 500 TYR B 87 0.10 SIDE CHAIN REMARK 500 ARG B 143 0.08 SIDE CHAIN REMARK 500 ARG C 176 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15711 RELATED DB: EMDB REMARK 900 HUMAN RHINOVIRUS 2 EMPTY PARTICLE IN SITU DBREF 8AY5 A 19 269 UNP P04936 POLG_HRV2 600 850 DBREF 8AY5 B 1 250 UNP P04936 POLG_HRV2 81 330 DBREF 8AY5 C 1 237 UNP P04936 POLG_HRV2 331 567 SEQRES 1 A 251 ALA LEU ASP ALA ALA GLU THR GLY HIS THR SER SER VAL SEQRES 2 A 251 GLN PRO GLU ASP VAL ILE GLU THR ARG TYR VAL GLN THR SEQRES 3 A 251 SER GLN THR ARG ASP GLU MET SER LEU GLU SER PHE LEU SEQRES 4 A 251 GLY ARG SER GLY CYS ILE HIS GLU SER LYS LEU GLU VAL SEQRES 5 A 251 THR LEU ALA ASN TYR ASN LYS GLU ASN PHE THR VAL TRP SEQRES 6 A 251 ALA ILE ASN LEU GLN GLU MET ALA GLN ILE ARG ARG LYS SEQRES 7 A 251 PHE GLU LEU PHE THR TYR THR ARG PHE ASP SER GLU ILE SEQRES 8 A 251 THR LEU VAL PRO CYS ILE SER ALA LEU SER GLN ASP ILE SEQRES 9 A 251 GLY HIS ILE THR MET GLN TYR MET TYR VAL PRO PRO GLY SEQRES 10 A 251 ALA PRO VAL PRO ASN SER ARG ASP ASP TYR ALA TRP GLN SEQRES 11 A 251 SER GLY THR ASN ALA SER VAL PHE TRP GLN HIS GLY GLN SEQRES 12 A 251 ALA TYR PRO ARG PHE SER LEU PRO PHE LEU SER VAL ALA SEQRES 13 A 251 SER ALA TYR TYR MET PHE TYR ASP GLY TYR ASP GLU GLN SEQRES 14 A 251 ASP GLN ASN TYR GLY THR ALA ASN THR ASN ASN MET GLY SEQRES 15 A 251 SER LEU CYS SER ARG ILE VAL THR GLU LYS HIS ILE HIS SEQRES 16 A 251 LYS VAL HIS ILE MET THR ARG ILE TYR HIS LYS ALA LYS SEQRES 17 A 251 HIS VAL LYS ALA TRP CYS PRO ARG PRO PRO ARG ALA LEU SEQRES 18 A 251 GLU TYR THR ARG ALA HIS ARG THR ASN PHE LYS ILE GLU SEQRES 19 A 251 ASP ARG SER ILE GLN THR ALA ILE VAL THR ARG PRO ILE SEQRES 20 A 251 ILE THR THR ALA SEQRES 1 B 250 ARG ILE ILE GLN ILE THR ARG GLY ASP SER THR ILE THR SEQRES 2 B 250 SER GLN ASP VAL ALA ASN ALA ILE VAL ALA TYR GLY VAL SEQRES 3 B 250 TRP PRO HIS TYR LEU SER SER LYS ASP ALA SER ALA ILE SEQRES 4 B 250 ASP LYS PRO SER GLN PRO ASP THR SER SER ASN ARG PHE SEQRES 5 B 250 TYR THR LEU ARG SER VAL THR TRP SER SER SER SER LYS SEQRES 6 B 250 GLY TRP TRP TRP LYS LEU PRO ASP ALA LEU LYS ASP MET SEQRES 7 B 250 GLY ILE PHE GLY GLU ASN MET PHE TYR HIS TYR LEU GLY SEQRES 8 B 250 ARG SER GLY TYR THR ILE HIS VAL GLN CYS ASN ALA SER SEQRES 9 B 250 LYS PHE HIS GLN GLY THR LEU ILE VAL ALA LEU ILE PRO SEQRES 10 B 250 GLU HIS GLN ILE ALA SER ALA LEU HIS GLY ASN VAL ASN SEQRES 11 B 250 VAL GLY TYR ASN TYR THR HIS PRO GLY GLU THR GLY ARG SEQRES 12 B 250 GLU VAL LYS ALA GLU THR ARG LEU ASN PRO ASP LEU GLN SEQRES 13 B 250 PRO THR GLU GLU TYR TRP LEU ASN PHE ASP GLY THR LEU SEQRES 14 B 250 LEU GLY ASN ILE THR ILE PHE PRO HIS GLN PHE ILE ASN SEQRES 15 B 250 LEU ARG SER ASN ASN SER ALA THR ILE ILE ALA PRO TYR SEQRES 16 B 250 VAL ASN ALA VAL PRO MET ASP SER MET ARG SER HIS ASN SEQRES 17 B 250 ASN TRP SER LEU VAL ILE ILE PRO ILE CYS PRO LEU GLU SEQRES 18 B 250 THR SER SER ALA ILE ASN THR ILE PRO ILE THR ILE SER SEQRES 19 B 250 ILE SER PRO MET CYS ALA GLU PHE SER GLY ALA ARG ALA SEQRES 20 B 250 LYS ARG GLN SEQRES 1 C 237 GLY LEU PRO VAL PHE ILE THR PRO GLY SER GLY GLN PHE SEQRES 2 C 237 LEU THR THR ASP ASP PHE GLN SER PRO CYS ALA LEU PRO SEQRES 3 C 237 TRP TYR HIS PRO THR LYS GLU ILE SER ILE PRO GLY GLU SEQRES 4 C 237 VAL LYS ASN LEU VAL GLU ILE CYS GLN VAL ASP SER LEU SEQRES 5 C 237 VAL PRO ILE ASN ASN THR ASP THR TYR ILE ASN SER GLU SEQRES 6 C 237 ASN MET TYR SER VAL VAL LEU GLN SER SER ILE ASN ALA SEQRES 7 C 237 PRO ASP LYS ILE PHE SER ILE ARG THR ASP VAL ALA SER SEQRES 8 C 237 GLN PRO LEU ALA THR THR LEU ILE GLY GLU ILE SER SER SEQRES 9 C 237 TYR PHE THR HIS TRP THR GLY SER LEU ARG PHE SER PHE SEQRES 10 C 237 MET PHE CYS GLY THR ALA ASN THR THR VAL LYS LEU LEU SEQRES 11 C 237 LEU ALA TYR THR PRO PRO GLY ILE ALA GLU PRO THR THR SEQRES 12 C 237 ARG LYS ASP ALA MET LEU GLY THR HIS VAL ILE TRP ASP SEQRES 13 C 237 VAL GLY LEU GLN SER THR ILE SER MET VAL VAL PRO TRP SEQRES 14 C 237 ILE SER ALA SER HIS TYR ARG ASN THR SER PRO GLY ARG SEQRES 15 C 237 SER THR SER GLY TYR ILE THR CYS TRP TYR GLN THR ARG SEQRES 16 C 237 LEU VAL ILE PRO PRO GLN THR PRO PRO THR ALA ARG LEU SEQRES 17 C 237 LEU CYS PHE VAL SER GLY CYS LYS ASP PHE CYS LEU ARG SEQRES 18 C 237 MET ALA ARG ASP THR ASN LEU HIS LEU GLN SER GLY ALA SEQRES 19 C 237 ILE ALA GLN HELIX 1 AA1 ALA A 22 GLY A 26 5 5 HELIX 2 AA2 GLN A 32 VAL A 36 5 5 HELIX 3 AA3 ARG A 48 MET A 51 5 4 HELIX 4 AA4 SER A 52 LEU A 57 1 6 HELIX 5 AA5 ASN A 74 ASN A 79 1 6 HELIX 6 AA6 MET A 90 GLU A 98 1 9 HELIX 7 AA7 ASP A 144 GLN A 148 5 5 HELIX 8 AA8 GLY A 192 ASN A 197 1 6 HELIX 9 AA9 VAL B 22 VAL B 26 5 5 HELIX 10 AB1 PRO B 45 SER B 49 5 5 HELIX 11 AB2 PRO B 72 LYS B 76 5 5 HELIX 12 AB3 GLY B 79 TYR B 87 1 9 HELIX 13 AB4 GLY B 132 HIS B 137 1 6 HELIX 14 AB5 PRO B 138 GLY B 142 5 5 HELIX 15 AB6 ASN B 152 GLN B 156 5 5 HELIX 16 AB7 GLU B 160 ASN B 164 5 5 HELIX 17 AB8 ASN B 172 PHE B 176 5 5 HELIX 18 AB9 SER B 203 HIS B 207 5 5 HELIX 19 AC1 LEU C 43 VAL C 49 1 7 HELIX 20 AC2 SER C 64 MET C 67 5 4 HELIX 21 AC3 PRO C 93 THR C 96 5 4 HELIX 22 AC4 THR C 97 TYR C 105 1 9 HELIX 23 AC5 THR C 143 GLY C 150 1 8 SHEET 1 AA1 5 LEU A 20 ASP A 21 0 SHEET 2 AA1 5 THR C 162 VAL C 167 -1 O THR C 162 N ASP A 21 SHEET 3 AA1 5 LEU C 113 PHE C 119 -1 N PHE C 115 O MET C 165 SHEET 4 AA1 5 ALA C 206 GLY C 214 -1 O PHE C 211 N SER C 116 SHEET 5 AA1 5 SER C 51 LEU C 52 -1 N SER C 51 O VAL C 212 SHEET 1 AA2 5 LEU A 20 ASP A 21 0 SHEET 2 AA2 5 THR C 162 VAL C 167 -1 O THR C 162 N ASP A 21 SHEET 3 AA2 5 LEU C 113 PHE C 119 -1 N PHE C 115 O MET C 165 SHEET 4 AA2 5 ALA C 206 GLY C 214 -1 O PHE C 211 N SER C 116 SHEET 5 AA2 5 SER C 69 LEU C 72 -1 N LEU C 72 O ALA C 206 SHEET 1 AA3 4 GLY A 61 GLU A 69 0 SHEET 2 AA3 4 VAL A 215 PRO A 233 -1 O ILE A 221 N ILE A 63 SHEET 3 AA3 4 PHE A 100 ALA A 117 -1 N SER A 116 O HIS A 216 SHEET 4 AA3 4 ARG A 165 LEU A 168 -1 O LEU A 168 N SER A 107 SHEET 1 AA4 4 GLY A 61 GLU A 69 0 SHEET 2 AA4 4 VAL A 215 PRO A 233 -1 O ILE A 221 N ILE A 63 SHEET 3 AA4 4 PHE A 100 ALA A 117 -1 N SER A 116 O HIS A 216 SHEET 4 AA4 4 TYR A 177 TYR A 178 -1 O TYR A 177 N THR A 103 SHEET 1 AA5 4 PHE A 80 ALA A 84 0 SHEET 2 AA5 4 SER A 201 ILE A 206 -1 O LEU A 202 N TRP A 83 SHEET 3 AA5 4 THR A 126 VAL A 132 -1 N VAL A 132 O SER A 201 SHEET 4 AA5 4 SER A 154 GLN A 158 -1 O TRP A 157 N MET A 127 SHEET 1 AA6 2 ILE B 3 ARG B 7 0 SHEET 2 AA6 2 SER B 10 SER B 14 -1 O SER B 10 N ARG B 7 SHEET 1 AA7 3 TYR B 53 THR B 54 0 SHEET 2 AA7 3 ILE B 229 ALA B 245 -1 O ILE B 235 N TYR B 53 SHEET 3 AA7 3 VAL B 58 TRP B 60 -1 N TRP B 60 O ILE B 229 SHEET 1 AA8 4 TYR B 53 THR B 54 0 SHEET 2 AA8 4 ILE B 229 ALA B 245 -1 O ILE B 235 N TYR B 53 SHEET 3 AA8 4 HIS B 88 GLN B 100 -1 N GLN B 100 O THR B 232 SHEET 4 AA8 4 SER B 188 ALA B 193 -1 O ILE B 191 N ILE B 97 SHEET 1 AA9 5 ARG B 143 GLU B 144 0 SHEET 2 AA9 5 TRP B 67 LEU B 71 -1 N TRP B 68 O ARG B 143 SHEET 3 AA9 5 TRP B 210 GLU B 221 -1 O TRP B 210 N LEU B 71 SHEET 4 AA9 5 GLN B 108 ILE B 116 -1 N ILE B 116 O SER B 211 SHEET 5 AA9 5 HIS B 178 ASN B 182 -1 O GLN B 179 N VAL B 113 SHEET 1 AB1 4 LYS C 81 ARG C 86 0 SHEET 2 AB1 4 TYR C 187 TYR C 192 -1 O CYS C 190 N ILE C 82 SHEET 3 AB1 4 LYS C 128 THR C 134 -1 N LEU C 130 O TRP C 191 SHEET 4 AB1 4 THR C 151 ASP C 156 -1 O THR C 151 N TYR C 133 SHEET 1 AB2 3 ARG C 176 ASN C 177 0 SHEET 2 AB2 3 HIS C 108 THR C 110 -1 N TRP C 109 O ARG C 176 SHEET 3 AB2 3 CYS C 219 ARG C 221 -1 O ARG C 221 N HIS C 108 CISPEP 1 LEU B 71 PRO B 72 0 13.36 CISPEP 2 GLN C 92 PRO C 93 0 -13.42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000