HEADER VIRUS LIKE PARTICLE 04-SEP-22 8AYZ TITLE POLIOVIRUS TYPE 2 (STRAIN MEF-1) VIRUS-LIKE PARTICLE IN COMPLEX WITH TITLE 2 CAPSID BINDER COMPOUND 17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN, VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P1D,VIRION PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAPSID PROTEIN, VP0; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: SEQUENCE IS GIVEN FOR THE VP0 POLYPEPTIDE.; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CAPSID PROTEIN, VP3; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: P1C,VIRION PROTEIN 3; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 2; SOURCE 3 ORGANISM_TAXID: 12083; SOURCE 4 STRAIN: MEF-1; SOURCE 5 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: BHK-21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: MODIFIED VACCINIA ANKARA (MVA) SOURCE 9 VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MVA-T7-POLIO2 PIRES; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 2; SOURCE 13 ORGANISM_TAXID: 12083; SOURCE 14 STRAIN: MEF-1; SOURCE 15 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: BHK-21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: MODIFIED VACCINIA ANKARA (MVA) SOURCE 19 VECTOR; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: MVA-T7-POLIO2 PIRES; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 2; SOURCE 23 ORGANISM_TAXID: 12083; SOURCE 24 STRAIN: MEF-1; SOURCE 25 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 27 EXPRESSION_SYSTEM_CELL_LINE: BHK-21; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: MODIFIED VACCINIA ANKARA (MVA) SOURCE 29 VECTOR; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: MVA-T7-POLIO2 PIRES KEYWDS CAPSID PROTEIN, VIRUS LIKE PARTICLE, INHIBITOR, COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR M.W.BAHAR,E.E.FRY,D.I.STUART REVDAT 1 07-DEC-22 8AYZ 0 JRNL AUTH M.W.BAHAR,V.NASTA,H.FOX,L.SHERRY,K.GREHAN,C.PORTA, JRNL AUTH 2 A.J.MACADAM,N.J.STONEHOUSE,D.J.ROWLANDS,E.E.FRY,D.I.STUART JRNL TITL A CONSERVED GLUTATHIONE BINDING SITE IN POLIOVIRUS IS A JRNL TITL 2 TARGET FOR ANTIVIRALS AND VACCINE STABILISATION. JRNL REF COMMUN BIOL V. 5 1293 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 36434067 JRNL DOI 10.1038/S42003-022-04252-5 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : ETHAN, EPU, CTFFIND, UCSF CHIMERA, REMARK 3 RELION, RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1EAH REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL MODEL WAS RIGID BODY FITTED USING UCSF REMARK 3 CHIMERA AND COOT. GLOBAL MINIMIZATION AND B-FACTOR REFINEMENT REMARK 3 WAS PERFORMED IN REAL SPACE USING PHENIX_REAL.SPACE.REFINE. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 1.880 REMARK 3 NUMBER OF PARTICLES : 51518 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: FINAL RECONSTRUCTION WAS EWALD SPHERE CORRECTED AND REMARK 3 SHARPENED WITH POST-PROCESSING IN RELION USING AN INVERSE B- REMARK 3 FACTOR OF -15.0 ANGSTROMS. B-FACTOR WAS SELECTED AD-HOC WHILE REMARK 3 TESTING A RANGE OF VALUES FOR MAP INTERPRETABILITY. REMARK 4 REMARK 4 8AYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125146. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN POLIOVIRUS 2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.75 REMARK 245 SAMPLE SUPPORT DETAILS : THE SPECIFIC TYPE OF GRID USED REMARK 245 WAS ULTRA-THIN CARBON SUPPORT REMARK 245 FILM, 3NM - ON LACEY CARBON REMARK 245 AGS187-4 FROM AGAR SCIENTIFIC. REMARK 245 SAMPLE VITRIFICATION DETAILS : SINGLE BLOTTING WITH 3.5UL OF REMARK 245 SAMPLE. FOUR SECOND BLOT TIME REMARK 245 AND -17 BLOT FORCE ON THE REMARK 245 VITROBOT. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : RECOMBINANTLY EXPRESSED VIRUS REMARK 245 -LIKE PARTICLE OF PV2 (STRAIN MEF-1) REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4750 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2300.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3468.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : 60314 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 180-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.309017 -0.809017 301.80862 REMARK 350 BIOMT2 2 -0.309017 0.809017 -0.500000 186.52798 REMARK 350 BIOMT3 2 0.809017 0.500000 0.309017 -115.27940 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 373.05990 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 373.05230 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 0.00760 REMARK 350 BIOMT1 4 -0.500000 -0.309017 -0.809017 488.33992 REMARK 350 BIOMT2 4 0.309017 0.809017 -0.500000 71.24530 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 186.52262 REMARK 350 BIOMT1 5 -0.500000 0.309017 -0.809017 373.06360 REMARK 350 BIOMT2 5 0.309017 -0.809017 -0.500000 373.04262 REMARK 350 BIOMT3 5 -0.809017 -0.500000 0.309017 373.05558 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 488.33560 REMARK 350 BIOMT2 6 0.809017 -0.500000 0.309017 71.23400 REMARK 350 BIOMT3 6 -0.500000 -0.309017 0.809017 186.52760 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 301.81830 REMARK 350 BIOMT2 7 -0.500000 -0.309017 0.809017 186.52000 REMARK 350 BIOMT3 7 0.309017 0.809017 0.500000 -115.27570 REMARK 350 BIOMT1 8 0.500000 0.309017 -0.809017 186.53230 REMARK 350 BIOMT2 8 0.309017 0.809017 0.500000 -115.28330 REMARK 350 BIOMT3 8 0.809017 -0.500000 0.309017 71.24160 REMARK 350 BIOMT1 9 -0.500000 0.309017 -0.809017 373.06360 REMARK 350 BIOMT2 9 -0.309017 0.809017 0.500000 -0.00062 REMARK 350 BIOMT3 9 0.809017 0.500000 -0.309017 0.00162 REMARK 350 BIOMT1 10 0.000000 0.000000 -1.000000 373.05990 REMARK 350 BIOMT2 10 1.000000 0.000000 0.000000 -0.01030 REMARK 350 BIOMT3 10 0.000000 -1.000000 0.000000 373.04960 REMARK 350 BIOMT1 11 -0.500000 -0.309017 -0.809017 488.33992 REMARK 350 BIOMT2 11 -0.309017 -0.809017 0.500000 301.79670 REMARK 350 BIOMT3 11 -0.809017 0.500000 0.309017 186.53458 REMARK 350 BIOMT1 12 -0.809017 -0.500000 0.309017 373.05828 REMARK 350 BIOMT2 12 -0.500000 0.309017 -0.809017 373.05330 REMARK 350 BIOMT3 12 0.309017 -0.809017 -0.500000 373.05022 REMARK 350 BIOMT1 13 0.000000 -1.000000 0.000000 373.05230 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 -0.00760 REMARK 350 BIOMT3 13 -1.000000 0.000000 0.000000 373.05990 REMARK 350 BIOMT1 14 -0.809017 0.500000 0.309017 186.53728 REMARK 350 BIOMT2 14 0.500000 0.309017 0.809017 -115.28762 REMARK 350 BIOMT3 14 0.309017 0.809017 -0.500000 71.25290 REMARK 350 BIOMT1 15 0.809017 0.500000 -0.309017 0.00432 REMARK 350 BIOMT2 15 0.500000 -0.309017 0.809017 -0.01130 REMARK 350 BIOMT3 15 0.309017 -0.809017 -0.500000 373.05022 REMARK 350 BIOMT1 16 -0.309017 0.809017 -0.500000 186.53828 REMARK 350 BIOMT2 16 0.809017 0.500000 0.309017 -115.28700 REMARK 350 BIOMT3 16 0.500000 -0.309017 -0.809017 301.80592 REMARK 350 BIOMT1 17 0.500000 -0.309017 -0.809017 301.80862 REMARK 350 BIOMT2 17 0.309017 -0.809017 0.500000 186.51402 REMARK 350 BIOMT3 17 -0.809017 -0.500000 -0.309017 488.33660 REMARK 350 BIOMT1 18 -0.809017 -0.500000 -0.309017 488.33930 REMARK 350 BIOMT2 18 -0.500000 0.309017 0.809017 71.24368 REMARK 350 BIOMT3 18 -0.309017 0.809017 -0.500000 186.53558 REMARK 350 BIOMT1 19 -0.309017 -0.809017 0.500000 301.80700 REMARK 350 BIOMT2 19 -0.809017 0.500000 0.309017 186.52698 REMARK 350 BIOMT3 19 -0.500000 -0.309017 -0.809017 488.33722 REMARK 350 BIOMT1 20 -0.309017 0.809017 0.500000 0.00968 REMARK 350 BIOMT2 20 0.809017 0.500000 -0.309017 -0.00598 REMARK 350 BIOMT3 20 -0.500000 0.309017 -0.809017 373.06090 REMARK 350 BIOMT1 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 -1.000000 0.000000 373.04200 REMARK 350 BIOMT3 21 0.000000 0.000000 -1.000000 373.05720 REMARK 350 BIOMT1 22 0.309017 0.809017 -0.500000 71.25560 REMARK 350 BIOMT2 22 0.809017 -0.500000 -0.309017 186.51502 REMARK 350 BIOMT3 22 -0.500000 -0.309017 -0.809017 488.33722 REMARK 350 BIOMT1 23 0.000000 1.000000 0.000000 0.01030 REMARK 350 BIOMT2 23 0.000000 0.000000 -1.000000 373.04960 REMARK 350 BIOMT3 23 -1.000000 0.000000 0.000000 373.05990 REMARK 350 BIOMT1 24 0.309017 -0.809017 -0.500000 373.05292 REMARK 350 BIOMT2 24 -0.809017 -0.500000 0.309017 373.04798 REMARK 350 BIOMT3 24 -0.500000 0.309017 -0.809017 373.06090 REMARK 350 BIOMT1 25 -1.000000 0.000000 0.000000 373.06260 REMARK 350 BIOMT2 25 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 25 0.000000 0.000000 -1.000000 373.05720 REMARK 350 BIOMT1 26 0.809017 0.500000 -0.309017 0.00432 REMARK 350 BIOMT2 26 -0.500000 0.309017 -0.809017 373.05330 REMARK 350 BIOMT3 26 -0.309017 0.809017 0.500000 0.00698 REMARK 350 BIOMT1 27 0.000000 -1.000000 0.000000 373.05230 REMARK 350 BIOMT2 27 0.000000 0.000000 -1.000000 373.04960 REMARK 350 BIOMT3 27 1.000000 0.000000 0.000000 -0.00270 REMARK 350 BIOMT1 28 -0.809017 0.500000 0.309017 186.53728 REMARK 350 BIOMT2 28 -0.500000 -0.309017 -0.809017 488.32962 REMARK 350 BIOMT3 28 -0.309017 -0.809017 0.500000 301.80430 REMARK 350 BIOMT1 29 -0.500000 -0.309017 0.809017 186.53030 REMARK 350 BIOMT2 29 -0.309017 -0.809017 -0.500000 488.32530 REMARK 350 BIOMT3 29 0.809017 -0.500000 0.309017 71.24160 REMARK 350 BIOMT1 30 0.309017 0.809017 0.500000 -115.27300 REMARK 350 BIOMT2 30 -0.809017 0.500000 -0.309017 301.80800 REMARK 350 BIOMT3 30 -0.500000 -0.309017 0.809017 186.52760 REMARK 350 BIOMT1 31 0.809017 -0.500000 0.309017 71.24430 REMARK 350 BIOMT2 31 0.500000 0.309017 -0.809017 186.52200 REMARK 350 BIOMT3 31 0.309017 0.809017 0.500000 -115.27570 REMARK 350 BIOMT1 32 0.809017 0.500000 0.309017 -115.27670 REMARK 350 BIOMT2 32 0.500000 -0.309017 -0.809017 301.79832 REMARK 350 BIOMT3 32 -0.309017 0.809017 -0.500000 186.53558 REMARK 350 BIOMT1 33 0.309017 -0.809017 0.500000 186.52432 REMARK 350 BIOMT2 33 -0.809017 -0.500000 -0.309017 488.32900 REMARK 350 BIOMT3 33 0.500000 -0.309017 -0.809017 301.80592 REMARK 350 BIOMT1 34 0.809017 -0.500000 -0.309017 186.52532 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 488.32962 REMARK 350 BIOMT3 34 0.309017 0.809017 -0.500000 71.25290 REMARK 350 BIOMT1 35 -0.500000 0.309017 0.809017 71.25398 REMARK 350 BIOMT2 35 -0.309017 0.809017 -0.500000 186.52798 REMARK 350 BIOMT3 35 -0.809017 -0.500000 -0.309017 488.33660 REMARK 350 BIOMT1 36 0.000000 0.000000 1.000000 0.00270 REMARK 350 BIOMT2 36 -1.000000 0.000000 0.000000 373.05230 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 373.04960 REMARK 350 BIOMT1 37 0.500000 0.309017 0.809017 -115.27732 REMARK 350 BIOMT2 37 0.309017 0.809017 -0.500000 71.24530 REMARK 350 BIOMT3 37 -0.809017 0.500000 0.309017 186.53458 REMARK 350 BIOMT1 38 0.500000 -0.309017 0.809017 -0.00100 REMARK 350 BIOMT2 38 0.309017 -0.809017 -0.500000 373.04262 REMARK 350 BIOMT3 38 0.809017 0.500000 -0.309017 0.00162 REMARK 350 BIOMT1 39 0.309017 0.809017 0.500000 -115.27300 REMARK 350 BIOMT2 39 0.809017 -0.500000 0.309017 71.23400 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 186.52960 REMARK 350 BIOMT1 40 0.809017 -0.500000 0.309017 71.24430 REMARK 350 BIOMT2 40 -0.500000 -0.309017 0.809017 186.52000 REMARK 350 BIOMT3 40 -0.309017 -0.809017 -0.500000 488.33290 REMARK 350 BIOMT1 41 -0.500000 -0.309017 0.809017 186.53030 REMARK 350 BIOMT2 41 0.309017 0.809017 0.500000 -115.28330 REMARK 350 BIOMT3 41 -0.809017 0.500000 -0.309017 301.81560 REMARK 350 BIOMT1 42 0.500000 -0.309017 0.809017 -0.00100 REMARK 350 BIOMT2 42 -0.309017 0.809017 0.500000 -0.00062 REMARK 350 BIOMT3 42 -0.809017 -0.500000 0.309017 373.05558 REMARK 350 BIOMT1 43 0.000000 0.000000 1.000000 0.00270 REMARK 350 BIOMT2 43 1.000000 0.000000 0.000000 -0.01030 REMARK 350 BIOMT3 43 0.000000 1.000000 0.000000 0.00760 REMARK 350 BIOMT1 44 0.500000 0.309017 0.809017 -115.27732 REMARK 350 BIOMT2 44 -0.309017 -0.809017 0.500000 301.79670 REMARK 350 BIOMT3 44 0.809017 -0.500000 -0.309017 186.52262 REMARK 350 BIOMT1 45 0.500000 0.309017 -0.809017 186.53230 REMARK 350 BIOMT2 45 -0.309017 -0.809017 -0.500000 488.32530 REMARK 350 BIOMT3 45 -0.809017 0.500000 -0.309017 301.81560 REMARK 350 BIOMT1 46 0.000000 1.000000 0.000000 0.01030 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 -0.00760 REMARK 350 BIOMT3 46 1.000000 0.000000 0.000000 -0.00270 REMARK 350 BIOMT1 47 0.809017 -0.500000 -0.309017 186.52532 REMARK 350 BIOMT2 47 0.500000 0.309017 0.809017 -115.28762 REMARK 350 BIOMT3 47 -0.309017 -0.809017 0.500000 301.80430 REMARK 350 BIOMT1 48 -0.809017 -0.500000 0.309017 373.05828 REMARK 350 BIOMT2 48 0.500000 -0.309017 0.809017 -0.01130 REMARK 350 BIOMT3 48 -0.309017 0.809017 0.500000 0.00698 REMARK 350 BIOMT1 49 0.309017 -0.809017 0.500000 186.52432 REMARK 350 BIOMT2 49 0.809017 0.500000 0.309017 -115.28700 REMARK 350 BIOMT3 49 -0.500000 0.309017 0.809017 71.25128 REMARK 350 BIOMT1 50 -0.500000 0.309017 0.809017 71.25398 REMARK 350 BIOMT2 50 0.309017 -0.809017 0.500000 186.51402 REMARK 350 BIOMT3 50 0.809017 0.500000 0.309017 -115.27940 REMARK 350 BIOMT1 51 0.809017 0.500000 0.309017 -115.27670 REMARK 350 BIOMT2 51 -0.500000 0.309017 0.809017 71.24368 REMARK 350 BIOMT3 51 0.309017 -0.809017 0.500000 186.52162 REMARK 350 BIOMT1 52 0.309017 0.809017 -0.500000 71.25560 REMARK 350 BIOMT2 52 -0.809017 0.500000 0.309017 186.52698 REMARK 350 BIOMT3 52 0.500000 0.309017 0.809017 -115.28002 REMARK 350 BIOMT1 53 0.309017 -0.809017 -0.500000 373.05292 REMARK 350 BIOMT2 53 0.809017 0.500000 -0.309017 -0.00598 REMARK 350 BIOMT3 53 0.500000 -0.309017 0.809017 -0.00370 REMARK 350 BIOMT1 54 -1.000000 0.000000 0.000000 373.06260 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 373.04200 REMARK 350 BIOMT3 54 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 55 -0.309017 -0.809017 0.500000 301.80700 REMARK 350 BIOMT2 55 0.809017 -0.500000 -0.309017 186.51502 REMARK 350 BIOMT3 55 0.500000 0.309017 0.809017 -115.28002 REMARK 350 BIOMT1 56 -0.309017 -0.809017 -0.500000 488.33560 REMARK 350 BIOMT2 56 -0.809017 0.500000 -0.309017 301.80800 REMARK 350 BIOMT3 56 0.500000 0.309017 -0.809017 186.52960 REMARK 350 BIOMT1 57 -0.309017 0.809017 0.500000 0.00968 REMARK 350 BIOMT2 57 -0.809017 -0.500000 0.309017 373.04798 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 -0.00370 REMARK 350 BIOMT1 58 -0.809017 0.500000 -0.309017 301.81830 REMARK 350 BIOMT2 58 0.500000 0.309017 -0.809017 186.52200 REMARK 350 BIOMT3 58 -0.309017 -0.809017 -0.500000 488.33290 REMARK 350 BIOMT1 59 -0.809017 -0.500000 -0.309017 488.33930 REMARK 350 BIOMT2 59 0.500000 -0.309017 -0.809017 301.79832 REMARK 350 BIOMT3 59 0.309017 -0.809017 0.500000 186.52162 REMARK 350 BIOMT1 60 -0.309017 0.809017 -0.500000 186.53828 REMARK 350 BIOMT2 60 -0.809017 -0.500000 -0.309017 488.32900 REMARK 350 BIOMT3 60 -0.500000 0.309017 0.809017 71.25128 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 GLU A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 THR A 14 REMARK 465 ARG A 15 REMARK 465 ASN A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 THR A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 MET B 1 REMARK 465 LYS B 9 REMARK 465 VAL B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 HIS B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 SER B 16 REMARK 465 ASN B 17 REMARK 465 ARG B 18 REMARK 465 ALA B 19 REMARK 465 TYR B 20 REMARK 465 GLY B 21 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 THR B 24 REMARK 465 ASP B 45 REMARK 465 PHE B 46 REMARK 465 ALA B 47 REMARK 465 GLN B 48 REMARK 465 ASP B 49 REMARK 465 PRO B 50 REMARK 465 SER B 51 REMARK 465 LYS B 52 REMARK 465 PHE B 53 REMARK 465 THR B 54 REMARK 465 GLU B 55 REMARK 465 PRO B 56 REMARK 465 ILE B 57 REMARK 465 LYS B 58 REMARK 465 ASP B 59 REMARK 465 VAL B 60 REMARK 465 LEU B 61 REMARK 465 ILE B 62 REMARK 465 LYS B 63 REMARK 465 THR B 64 REMARK 465 ALA B 65 REMARK 465 PRO B 66 REMARK 465 THR B 67 REMARK 465 LEU B 68 REMARK 465 ASN B 69 REMARK 465 SER B 70 REMARK 465 PRO B 71 REMARK 465 ASN B 72 REMARK 465 ILE B 73 REMARK 465 GLU B 74 REMARK 465 ALA B 75 REMARK 465 CYS B 76 REMARK 465 GLY B 77 REMARK 465 TYR B 78 REMARK 465 MET C 236 REMARK 465 PRO C 237 REMARK 465 GLN C 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 232 -64.89 -93.80 REMARK 500 CYS A 270 74.49 61.66 REMARK 500 LYS A 287 -38.15 -130.81 REMARK 500 ASN B 99 178.27 62.00 REMARK 500 ASP B 126 -123.39 62.08 REMARK 500 SER B 251 22.91 -141.80 REMARK 500 ASN C 11 -0.09 72.42 REMARK 500 LEU C 57 52.04 -95.77 REMARK 500 THR C 196 -75.60 -100.33 REMARK 500 ARG C 197 167.39 174.90 REMARK 500 LEU C 224 68.88 61.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15727 RELATED DB: EMDB REMARK 900 POLIOVIRUS TYPE 2 (STRAIN MEF-1) VIRUS-LIKE PARTICLE IN COMPLEX REMARK 900 WITH CAPSID BINDER COMPOUND 17 REMARK 900 RELATED ID: 8AYX RELATED DB: PDB REMARK 900 RELATED ID: EMD-15725 RELATED DB: EMDB REMARK 900 RELATED ID: 8AYY RELATED DB: PDB REMARK 900 RELATED ID: EMD-15726 RELATED DB: EMDB DBREF 8AYZ A 1 301 UNP P06210 POLG_POL2L 579 879 DBREF 8AYZ B 1 340 UNP P06210 POLG_POL2L 1 340 DBREF 8AYZ C 2 238 UNP P06210 POLG_POL2L 342 578 SEQADV 8AYZ GLU A 295 UNP P06210 GLY 873 VARIANT SEQADV 8AYZ GLY C 1 UNP P06210 EXPRESSION TAG SEQRES 1 A 301 GLY LEU GLY ASP LEU ILE GLU GLY VAL VAL GLU GLY VAL SEQRES 2 A 301 THR ARG ASN ALA LEU THR PRO LEU THR PRO ALA ASN ASN SEQRES 3 A 301 LEU PRO ASP THR GLN SER SER GLY PRO ALA HIS SER LYS SEQRES 4 A 301 GLU THR PRO ALA LEU THR ALA VAL GLU THR GLY ALA THR SEQRES 5 A 301 ASN PRO LEU VAL PRO SER ASP THR VAL GLN THR ARG HIS SEQRES 6 A 301 VAL ILE GLN LYS ARG THR ARG SER GLU SER THR VAL GLU SEQRES 7 A 301 SER PHE PHE ALA ARG GLY ALA CYS VAL ALA ILE ILE GLU SEQRES 8 A 301 VAL ASP ASN ASP ALA PRO THR LYS ARG ALA SER LYS LEU SEQRES 9 A 301 PHE SER VAL TRP LYS ILE THR TYR LYS ASP THR VAL GLN SEQRES 10 A 301 LEU ARG ARG LYS LEU GLU PHE PHE THR TYR SER ARG PHE SEQRES 11 A 301 ASP MET GLU PHE THR PHE VAL VAL THR SER ASN TYR THR SEQRES 12 A 301 ASP ALA ASN ASN GLY HIS ALA LEU ASN GLN VAL TYR GLN SEQRES 13 A 301 ILE MET TYR ILE PRO PRO GLY ALA PRO ILE PRO GLY LYS SEQRES 14 A 301 TRP ASN ASP TYR THR TRP GLN THR SER SER ASN PRO SER SEQRES 15 A 301 VAL PHE TYR THR TYR GLY ALA PRO PRO ALA ARG ILE SER SEQRES 16 A 301 VAL PRO TYR VAL GLY ILE ALA ASN ALA TYR SER HIS PHE SEQRES 17 A 301 TYR ASP GLY PHE ALA LYS VAL PRO LEU ALA GLY GLN ALA SEQRES 18 A 301 SER THR GLU GLY ASP SER LEU TYR GLY ALA ALA SER LEU SEQRES 19 A 301 ASN ASP PHE GLY SER LEU ALA VAL ARG VAL VAL ASN ASP SEQRES 20 A 301 HIS ASN PRO THR LYS LEU THR SER LYS ILE ARG VAL TYR SEQRES 21 A 301 MET LYS PRO LYS HIS VAL ARG VAL TRP CYS PRO ARG PRO SEQRES 22 A 301 PRO ARG ALA VAL PRO TYR TYR GLY PRO GLY VAL ASP TYR SEQRES 23 A 301 LYS ASP GLY LEU ALA PRO LEU PRO GLU LYS GLY LEU THR SEQRES 24 A 301 THR TYR SEQRES 1 B 340 MET GLY ALA GLN VAL SER SER GLN LYS VAL GLY ALA HIS SEQRES 2 B 340 GLU ASN SER ASN ARG ALA TYR GLY GLY SER THR ILE ASN SEQRES 3 B 340 TYR THR THR ILE ASN TYR TYR ARG ASP SER ALA SER ASN SEQRES 4 B 340 ALA ALA SER LYS GLN ASP PHE ALA GLN ASP PRO SER LYS SEQRES 5 B 340 PHE THR GLU PRO ILE LYS ASP VAL LEU ILE LYS THR ALA SEQRES 6 B 340 PRO THR LEU ASN SER PRO ASN ILE GLU ALA CYS GLY TYR SEQRES 7 B 340 SER ASP ARG VAL MET GLN LEU THR LEU GLY ASN SER THR SEQRES 8 B 340 ILE THR THR GLN GLU ALA ALA ASN SER VAL VAL ALA TYR SEQRES 9 B 340 GLY ARG TRP PRO GLU TYR ILE LYS ASP SER GLU ALA ASN SEQRES 10 B 340 PRO VAL ASP GLN PRO THR GLU PRO ASP VAL ALA ALA CYS SEQRES 11 B 340 ARG PHE TYR THR LEU ASP THR VAL THR TRP ARG LYS GLU SEQRES 12 B 340 SER ARG GLY TRP TRP TRP LYS LEU PRO ASP ALA LEU LYS SEQRES 13 B 340 ASP MET GLY LEU PHE GLY GLN ASN MET PHE TYR HIS TYR SEQRES 14 B 340 LEU GLY ARG ALA GLY TYR THR VAL HIS VAL GLN CYS ASN SEQRES 15 B 340 ALA SER LYS PHE HIS GLN GLY ALA LEU GLY VAL PHE ALA SEQRES 16 B 340 VAL PRO GLU MET CYS LEU ALA GLY ASP SER THR THR HIS SEQRES 17 B 340 MET PHE THR LYS TYR GLU ASN ALA ASN PRO GLY GLU LYS SEQRES 18 B 340 GLY GLY GLU PHE LYS GLY SER PHE THR LEU ASP THR ASN SEQRES 19 B 340 ALA THR ASN PRO ALA ARG ASN PHE CYS PRO VAL ASP TYR SEQRES 20 B 340 LEU PHE GLY SER GLY VAL LEU ALA GLY ASN ALA PHE VAL SEQRES 21 B 340 TYR PRO HIS GLN ILE ILE ASN LEU ARG THR ASN ASN CYS SEQRES 22 B 340 ALA THR LEU VAL LEU PRO TYR VAL ASN SER LEU SER ILE SEQRES 23 B 340 ASP SER MET THR LYS HIS ASN ASN TRP GLY ILE ALA ILE SEQRES 24 B 340 LEU PRO LEU ALA PRO LEU ASP PHE ALA THR GLU SER SER SEQRES 25 B 340 THR GLU ILE PRO ILE THR LEU THR ILE ALA PRO MET CYS SEQRES 26 B 340 CYS GLU PHE ASN GLY LEU ARG ASN ILE THR VAL PRO ARG SEQRES 27 B 340 THR GLN SEQRES 1 C 238 GLY LEU PRO VAL LEU ASN THR PRO GLY SER ASN GLN TYR SEQRES 2 C 238 LEU THR ALA ASP ASN TYR GLN SER PRO CYS ALA ILE PRO SEQRES 3 C 238 GLU PHE ASP VAL THR PRO PRO ILE ASP ILE PRO GLY GLU SEQRES 4 C 238 VAL ARG ASN MET MET GLU LEU ALA GLU ILE ASP THR MET SEQRES 5 C 238 ILE PRO LEU ASN LEU THR ASN GLN ARG LYS ASN THR MET SEQRES 6 C 238 ASP MET TYR ARG VAL GLU LEU ASN ASP ALA ALA HIS SER SEQRES 7 C 238 ASP THR PRO ILE LEU CYS LEU SER LEU SER PRO ALA SER SEQRES 8 C 238 ASP PRO ARG LEU ALA HIS THR MET LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR THR HIS TRP ALA GLY SER LEU LYS PHE THR SEQRES 10 C 238 PHE LEU PHE CYS GLY SER MET MET ALA THR GLY LYS LEU SEQRES 11 C 238 LEU VAL SER TYR ALA PRO PRO GLY ALA GLU ALA PRO LYS SEQRES 12 C 238 SER ARG LYS GLU ALA MET LEU GLY THR HIS VAL ILE TRP SEQRES 13 C 238 ASP ILE GLY LEU GLN SER SER CYS THR MET VAL VAL PRO SEQRES 14 C 238 TRP ILE SER ASN THR THR TYR ARG GLN THR ILE ASN ASP SEQRES 15 C 238 SER PHE THR GLU GLY GLY TYR ILE SER MET PHE TYR GLN SEQRES 16 C 238 THR ARG VAL VAL VAL PRO LEU SER THR PRO ARG LYS MET SEQRES 17 C 238 ASP ILE LEU GLY PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG LEU LEU ARG ASP THR THR HIS ILE SER GLN GLU SEQRES 19 C 238 ALA MET PRO GLN HET SPH A 401 21 HET FHK A 402 30 HETNAM SPH SPHINGOSINE HETNAM FHK 4-[[4-[1,3-BIS(OXIDANYLIDENE)ISOINDOL-2- HETNAM 2 FHK YL]PHENYL]SULFONYLAMINO]BENZOIC ACID FORMUL 4 SPH C18 H37 N O2 FORMUL 5 FHK C21 H14 N2 O6 S FORMUL 6 HOH *262(H2 O) HELIX 1 AA1 ALA A 46 GLY A 50 5 5 HELIX 2 AA2 VAL A 56 THR A 60 5 5 HELIX 3 AA3 ARG A 72 SER A 75 5 4 HELIX 4 AA4 THR A 76 ALA A 82 1 7 HELIX 5 AA5 VAL A 116 PHE A 124 1 9 HELIX 6 AA6 ASP A 172 THR A 177 5 6 HELIX 7 AA7 ASP B 35 ASN B 39 5 5 HELIX 8 AA8 TYR B 104 ARG B 106 5 3 HELIX 9 AA9 LYS B 112 ALA B 116 5 5 HELIX 10 AB1 PRO B 125 ALA B 129 5 5 HELIX 11 AB2 PRO B 152 LYS B 156 5 5 HELIX 12 AB3 MET B 158 TYR B 167 1 10 HELIX 13 AB4 LYS B 212 ASN B 217 1 6 HELIX 14 AB5 PRO B 218 GLY B 222 5 5 HELIX 15 AB6 LEU B 254 TYR B 261 5 8 HELIX 16 AB7 ASN C 42 GLU C 48 1 7 HELIX 17 AB8 THR C 64 MET C 67 5 4 HELIX 18 AB9 ASP C 92 HIS C 97 1 6 HELIX 19 AC1 THR C 98 ASN C 105 1 8 HELIX 20 AC2 SER C 144 MET C 149 1 6 HELIX 21 AC3 ASP C 182 GLU C 186 5 5 SHEET 1 AA1 5 LEU A 44 THR A 45 0 SHEET 2 AA1 5 SER C 163 VAL C 168 -1 O SER C 163 N THR A 45 SHEET 3 AA1 5 LEU C 114 PHE C 120 -1 N PHE C 116 O MET C 166 SHEET 4 AA1 5 LYS C 207 ALA C 216 -1 O PHE C 213 N THR C 117 SHEET 5 AA1 5 THR C 51 MET C 52 -1 N THR C 51 O VAL C 214 SHEET 1 AA2 5 LEU A 44 THR A 45 0 SHEET 2 AA2 5 SER C 163 VAL C 168 -1 O SER C 163 N THR A 45 SHEET 3 AA2 5 LEU C 114 PHE C 120 -1 N PHE C 116 O MET C 166 SHEET 4 AA2 5 LYS C 207 ALA C 216 -1 O PHE C 213 N THR C 117 SHEET 5 AA2 5 ARG C 69 ASN C 73 -1 N LEU C 72 O MET C 208 SHEET 1 AA3 4 ALA A 85 ASN A 94 0 SHEET 2 AA3 4 LEU A 253 PRO A 271 -1 O VAL A 259 N VAL A 87 SHEET 3 AA3 4 PHE A 125 TYR A 142 -1 N VAL A 137 O ARG A 258 SHEET 4 AA3 4 TYR A 205 SER A 206 -1 O TYR A 205 N SER A 128 SHEET 1 AA4 4 ALA A 192 VAL A 196 0 SHEET 2 AA4 4 PHE A 125 TYR A 142 -1 N MET A 132 O VAL A 196 SHEET 3 AA4 4 LEU A 253 PRO A 271 -1 O ARG A 258 N VAL A 137 SHEET 4 AA4 4 GLU C 39 VAL C 40 -1 O VAL C 40 N VAL A 268 SHEET 1 AA5 4 PHE A 105 LYS A 109 0 SHEET 2 AA5 4 SER A 239 VAL A 244 -1 O VAL A 242 N SER A 106 SHEET 3 AA5 4 VAL A 154 ILE A 160 -1 N MET A 158 O ALA A 241 SHEET 4 AA5 4 SER A 182 THR A 186 -1 O TYR A 185 N TYR A 155 SHEET 1 AA6 2 GLN B 4 SER B 6 0 SHEET 2 AA6 2 TYR B 27 THR B 29 -1 O THR B 29 N GLN B 4 SHEET 1 AA7 2 MET B 83 LEU B 87 0 SHEET 2 AA7 2 SER B 90 THR B 94 -1 O SER B 90 N LEU B 87 SHEET 1 AA8 5 SER B 100 VAL B 102 0 SHEET 2 AA8 5 CYS B 273 LEU B 278 1 O VAL B 277 N VAL B 101 SHEET 3 AA8 5 HIS B 168 GLN B 180 -1 N VAL B 177 O LEU B 276 SHEET 4 AA8 5 GLU B 314 LEU B 331 -1 O ASN B 329 N LEU B 170 SHEET 5 AA8 5 TYR B 133 THR B 134 -1 N TYR B 133 O ILE B 321 SHEET 1 AA9 5 SER B 100 VAL B 102 0 SHEET 2 AA9 5 CYS B 273 LEU B 278 1 O VAL B 277 N VAL B 101 SHEET 3 AA9 5 HIS B 168 GLN B 180 -1 N VAL B 177 O LEU B 276 SHEET 4 AA9 5 GLU B 314 LEU B 331 -1 O ASN B 329 N LEU B 170 SHEET 5 AA9 5 VAL B 138 ARG B 141 -1 N TRP B 140 O ILE B 315 SHEET 1 AB1 5 GLY B 223 GLU B 224 0 SHEET 2 AB1 5 TRP B 147 LEU B 151 -1 N TRP B 148 O GLY B 223 SHEET 3 AB1 5 TRP B 295 PHE B 307 -1 O TRP B 295 N LEU B 151 SHEET 4 AB1 5 HIS B 187 PRO B 197 -1 N GLY B 192 O LEU B 300 SHEET 5 AB1 5 HIS B 263 ASN B 267 -1 O GLN B 264 N VAL B 193 SHEET 1 AB2 4 LEU C 83 SER C 86 0 SHEET 2 AB2 4 TYR C 189 TYR C 194 -1 O ILE C 190 N LEU C 85 SHEET 3 AB2 4 GLY C 128 ALA C 135 -1 N SER C 133 O SER C 191 SHEET 4 AB2 4 THR C 152 ILE C 158 -1 O ILE C 158 N GLY C 128 SHEET 1 AB3 3 ARG C 177 GLN C 178 0 SHEET 2 AB3 3 TYR C 107 ALA C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AB3 3 SER C 221 LEU C 225 -1 O SER C 221 N ALA C 111 CISPEP 1 LEU B 151 PRO B 152 0 10.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000