HEADER TRANSPORT PROTEIN 05-SEP-22 8AZB TITLE CRYSTAL STRUCTURE OF THE PEPTIDE BINDING PROTEIN DPPE FROM BACILLUS TITLE 2 SUBTILIS IN THE UNLIGANDED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDE-BINDING PROTEIN DPPE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: DPPE, DCIAE, BSU12960; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDE-BINDING PROTEIN, MUREIN TRIPEPTIDE, BACILLUS SUBTILIS, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.HUGHES,E.J.DODSON,A.J.WILKINSON REVDAT 2 07-FEB-24 8AZB 1 REMARK REVDAT 1 22-FEB-23 8AZB 0 JRNL AUTH A.M.HUGHES,J.F.DARBY,E.J.DODSON,S.J.WILSON,J.P.TURKENBURG, JRNL AUTH 2 G.H.THOMAS,A.J.WILKINSON JRNL TITL PEPTIDE TRANSPORT IN BACILLUS SUBTILIS - STRUCTURE AND JRNL TITL 2 SPECIFICITY IN THE EXTRACELLULAR SOLUTE BINDING PROTEINS JRNL TITL 3 OPPA AND DPPE. JRNL REF MICROBIOLOGY (READING, V. 168 2022 JRNL REF 2 ENGL.) JRNL REFN ESSN 1465-2080 JRNL PMID 36748525 JRNL DOI 10.1099/MIC.0.001274 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 104711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.997 REMARK 3 FREE R VALUE TEST SET COUNT : 5232 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 354 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4029 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 513 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23900 REMARK 3 B22 (A**2) : -0.31900 REMARK 3 B33 (A**2) : 0.55800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.994 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4205 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3703 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5717 ; 1.810 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8704 ; 0.593 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 523 ; 6.400 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ; 5.791 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 720 ;13.087 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4803 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 821 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 731 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 51 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2059 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 309 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2030 ; 1.657 ; 1.612 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2030 ; 1.655 ; 1.611 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2543 ; 2.423 ; 2.424 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2544 ; 2.425 ; 2.425 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2175 ; 2.888 ; 1.893 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2174 ; 2.883 ; 1.891 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3163 ; 4.219 ; 2.723 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3164 ; 4.218 ; 2.723 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104801 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 46.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.03400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 8AY0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LIGAND FREE DPPE WAS CRYSTALLISED IN A REMARK 280 SITTING DROP FORMED BY MIXING 150 NL OF THE UNLIGANDED PROTEIN REMARK 280 AT 9 MG.ML-1 WITH 150 NL OF 0.1 M MIB BUFFER PH 4.0, 25 % (W/V) REMARK 280 PEG 1500., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.26500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.37000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.37000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.26500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 GLU A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 HIS A 13 REMARK 465 ASP A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 LYS A 17 REMARK 465 THR A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LYS A 138 CE NZ REMARK 470 LYS A 205 CD CE NZ REMARK 470 LYS A 308 CE NZ REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 LYS A 375 CE NZ REMARK 470 LYS A 380 CD CE NZ REMARK 470 LYS A 467 CD CE NZ REMARK 470 GLU A 500 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD2 HIS A 63 HD2 HIS A 508 1.04 REMARK 500 O HOH A 856 O HOH A 885 1.26 REMARK 500 HH TYR A 82 O HOH A 601 1.50 REMARK 500 O HOH A 997 O HOH A 1025 1.69 REMARK 500 OH TYR A 82 O HOH A 601 1.74 REMARK 500 O HOH A 975 O HOH A 1107 1.79 REMARK 500 O HOH A 823 O HOH A 898 1.91 REMARK 500 O HOH A 674 O HOH A 805 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 888 O HOH A 1094 4555 1.80 REMARK 500 O HOH A 696 O HOH A 1042 4445 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 82 CB - CG - CD2 ANGL. DEV. = -10.0 DEGREES REMARK 500 TYR A 82 CB - CG - CD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 -42.36 80.07 REMARK 500 ALA A 68 -100.99 -130.71 REMARK 500 ASP A 207 -2.92 76.56 REMARK 500 GLU A 257 -39.82 -39.44 REMARK 500 ASN A 345 104.09 -160.46 REMARK 500 LYS A 375 140.13 -176.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 8AZB A 1 521 UNP P26906 DPPE_BACSU 23 543 SEQRES 1 A 521 CYS THR ALA ASN GLU GLN ALA GLY LYS GLU GLY SER HIS SEQRES 2 A 521 ASP LYS ALA LYS THR SER GLY GLU LYS VAL LEU TYR VAL SEQRES 3 A 521 ASN ASN GLU ASN GLU PRO THR SER PHE ASP PRO PRO ILE SEQRES 4 A 521 GLY PHE ASN ASN VAL SER TRP GLN PRO LEU ASN ASN ILE SEQRES 5 A 521 MET GLU GLY LEU THR ARG LEU GLY LYS ASP HIS GLU PRO SEQRES 6 A 521 GLU PRO ALA MET ALA GLU LYS TRP SER VAL SER LYS ASP SEQRES 7 A 521 ASN LYS THR TYR THR PHE THR ILE ARG GLU ASN ALA LYS SEQRES 8 A 521 TRP THR ASN GLY ASP PRO VAL THR ALA GLY ASP PHE GLU SEQRES 9 A 521 TYR ALA TRP LYS ARG MET LEU ASP PRO LYS LYS GLY ALA SEQRES 10 A 521 SER SER ALA PHE LEU GLY TYR PHE ILE GLU GLY GLY GLU SEQRES 11 A 521 ALA TYR ASN SER GLY LYS GLY LYS LYS ASP ASP VAL LYS SEQRES 12 A 521 VAL THR ALA LYS ASP ASP ARG THR LEU GLU VAL THR LEU SEQRES 13 A 521 GLU ALA PRO GLN LYS TYR PHE LEU SER VAL VAL SER ASN SEQRES 14 A 521 PRO ALA TYR PHE PRO VAL ASN GLU LYS VAL ASP LYS ASP SEQRES 15 A 521 ASN PRO LYS TRP PHE ALA GLU SER ASP THR PHE VAL GLY SEQRES 16 A 521 ASN GLY PRO PHE LYS LEU THR GLU TRP LYS HIS ASP ASP SEQRES 17 A 521 SER ILE THR MET GLU LYS SER ASP THR TYR TRP ASP LYS SEQRES 18 A 521 ASP THR VAL LYS LEU ASP LYS VAL LYS TRP ALA MET VAL SEQRES 19 A 521 SER ASP ARG ASN THR ASP TYR GLN MET PHE GLN SER GLY SEQRES 20 A 521 GLU LEU ASP THR ALA TYR VAL PRO ALA GLU LEU SER ASP SEQRES 21 A 521 GLN LEU LEU ASP GLN ASP ASN VAL ASN ILE VAL ASP GLN SEQRES 22 A 521 ALA GLY LEU TYR PHE TYR ARG PHE ASN VAL ASN MET GLU SEQRES 23 A 521 PRO PHE GLN ASN GLU ASN ILE ARG LYS ALA PHE ALA MET SEQRES 24 A 521 ALA VAL ASP GLN GLU GLU ILE VAL LYS TYR VAL THR LYS SEQRES 25 A 521 ASN ASN GLU LYS PRO ALA HIS ALA PHE VAL SER PRO GLY SEQRES 26 A 521 PHE THR GLN PRO ASP GLY LYS ASP PHE ARG GLU ALA GLY SEQRES 27 A 521 GLY ASP LEU ILE LYS PRO ASN GLU SER LYS ALA LYS GLN SEQRES 28 A 521 LEU LEU GLU LYS GLY MET LYS GLU GLU ASN TYR ASN LYS SEQRES 29 A 521 LEU PRO ALA ILE THR LEU THR TYR SER THR LYS PRO GLU SEQRES 30 A 521 HIS LYS LYS ILE ALA GLU ALA ILE GLN GLN LYS LEU LYS SEQRES 31 A 521 ASN SER LEU GLY VAL ASP VAL LYS LEU ALA ASN MET GLU SEQRES 32 A 521 TRP ASN VAL PHE LEU GLU ASP GLN LYS ALA LEU LYS PHE SEQRES 33 A 521 GLN PHE SER GLN SER SER PHE LEU PRO ASP TYR ALA ASP SEQRES 34 A 521 PRO ILE SER PHE LEU GLU ALA PHE GLN THR GLY ASN SER SEQRES 35 A 521 MET ASN ARG THR GLY TRP ALA ASN LYS GLU TYR ASP GLN SEQRES 36 A 521 LEU ILE LYS GLN ALA LYS ASN GLU ALA ASP GLU LYS THR SEQRES 37 A 521 ARG PHE SER LEU MET HIS GLN ALA GLU GLU LEU LEU ILE SEQRES 38 A 521 ASN GLU ALA PRO ILE ILE PRO VAL TYR PHE TYR ASN GLN SEQRES 39 A 521 VAL HIS LEU GLN ASN GLU GLN VAL LYS GLY ILE VAL ARG SEQRES 40 A 521 HIS PRO VAL GLY TYR ILE ASP LEU LYS TRP ALA ASP LYS SEQRES 41 A 521 ASN FORMUL 2 HOH *513(H2 O) HELIX 1 AA1 ASN A 42 MET A 53 1 12 HELIX 2 AA2 THR A 99 ASP A 112 1 14 HELIX 3 AA3 SER A 119 ILE A 126 5 8 HELIX 4 AA4 GLY A 128 SER A 134 1 7 HELIX 5 AA5 LYS A 138 VAL A 142 5 5 HELIX 6 AA6 TYR A 162 VAL A 167 1 6 HELIX 7 AA7 SER A 168 PHE A 173 5 6 HELIX 8 AA8 ASN A 176 ASN A 183 1 8 HELIX 9 AA9 LYS A 185 PHE A 193 5 9 HELIX 10 AB1 ASP A 220 VAL A 224 5 5 HELIX 11 AB2 ASP A 236 SER A 246 1 11 HELIX 12 AB3 LEU A 258 LEU A 263 1 6 HELIX 13 AB4 ASN A 290 VAL A 301 1 12 HELIX 14 AB5 ASP A 302 VAL A 310 1 9 HELIX 15 AB6 ASP A 333 GLY A 339 1 7 HELIX 16 AB7 ASN A 345 ASN A 361 1 17 HELIX 17 AB8 LYS A 375 GLY A 394 1 20 HELIX 18 AB9 GLU A 403 ALA A 413 1 11 HELIX 19 AC1 PRO A 430 GLU A 435 1 6 HELIX 20 AC2 ALA A 436 GLN A 438 5 3 HELIX 21 AC3 ASN A 450 ASN A 462 1 13 HELIX 22 AC4 ASP A 465 ALA A 484 1 20 SHEET 1 AA1 4 VAL A 23 ASN A 27 0 SHEET 2 AA1 4 LYS A 228 ALA A 232 1 O LYS A 230 N VAL A 26 SHEET 3 AA1 4 SER A 209 LYS A 214 -1 N ILE A 210 O TRP A 231 SHEET 4 AA1 4 PHE A 199 LYS A 205 -1 N LYS A 200 O GLU A 213 SHEET 1 AA2 2 THR A 57 LEU A 59 0 SHEET 2 AA2 2 PRO A 65 PRO A 67 -1 O GLU A 66 N ARG A 58 SHEET 1 AA3 4 ALA A 70 VAL A 75 0 SHEET 2 AA3 4 THR A 81 ILE A 86 -1 O THR A 85 N LYS A 72 SHEET 3 AA3 4 THR A 151 THR A 155 -1 O VAL A 154 N TYR A 82 SHEET 4 AA3 4 VAL A 144 ASP A 148 -1 N THR A 145 O GLU A 153 SHEET 1 AA4 3 THR A 251 ALA A 252 0 SHEET 2 AA4 3 ILE A 486 GLN A 498 -1 O LEU A 497 N ALA A 252 SHEET 3 AA4 3 LYS A 316 PRO A 317 -1 N LYS A 316 O PHE A 491 SHEET 1 AA5 4 THR A 251 ALA A 252 0 SHEET 2 AA5 4 ILE A 486 GLN A 498 -1 O LEU A 497 N ALA A 252 SHEET 3 AA5 4 VAL A 268 PHE A 281 -1 N ASN A 269 O HIS A 496 SHEET 4 AA5 4 PHE A 418 PHE A 423 -1 O SER A 421 N PHE A 278 SHEET 1 AA6 2 ILE A 368 SER A 373 0 SHEET 2 AA6 2 VAL A 397 MET A 402 1 O LYS A 398 N LEU A 370 SHEET 1 AA7 2 VAL A 502 LYS A 503 0 SHEET 2 AA7 2 ASP A 519 LYS A 520 -1 O ASP A 519 N LYS A 503 CISPEP 1 GLU A 286 PRO A 287 0 2.25 CRYST1 54.530 91.080 106.740 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009369 0.00000