HEADER VIRAL PROTEIN 09-SEP-22 8B14 TITLE T5 RECEPTOR BINDING PROTEIN PB5 IN COMPLEX WITH ITS E. COLI RECEPTOR TITLE 2 FHUA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FHUA IRON-FERRICHROME TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PB5 BACTERIOPHAGE T5 RECEPTOR BINDING PROTEIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: AW740; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE T5; SOURCE 9 ORGANISM_COMMON: ENTEROBACTERIA PHAGE T5; SOURCE 10 ORGANISM_TAXID: 2695836; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-28 KEYWDS BACTERIOPHAGE, RECEPTOR, COMPLEX, RPB, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.DEGROUX,G.EFFANTIN,R.LINARES,G.SCHOEHN,C.BREYTON REVDAT 3 20-NOV-24 8B14 1 REMARK REVDAT 2 21-FEB-24 8B14 1 JRNL REMARK REVDAT 1 08-FEB-23 8B14 0 JRNL AUTH S.DEGROUX,G.EFFANTIN,R.LINARES,G.SCHOEHN,C.BREYTON JRNL TITL DECIPHERING BACTERIOPHAGE T5 HOST RECOGNITION MECHANISM AND JRNL TITL 2 INFECTION TRIGGER. JRNL REF J.VIROL. V. 97 58422 2023 JRNL REFN ESSN 1098-5514 JRNL PMID 36779755 JRNL DOI 10.1128/JVI.01584-22 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, GCTF, UCSF CHIMERA, COOT, PHENIX, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2GRX REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : THE PB5 PROTEIN MODEL WAS BUILT DE NOVO IN THE REMARK 3 CRYO-ELECTRON MICROSCOPY MAP. FHUA WAS ADAPTED FROM THE FHUA REMARK 3 STRUCTURE SOLVED BY X-RAY CRYSTALLOGRAPHY (PDB 2GRX). THE TWO REMARK 3 STRUCTURES WERE FIRST REFINED SEPARATELY USING COOT (VERSION REMARK 3 0.9.2) AND PHENIX (VERSION 1.18.2-3874) SOFTWARES, THEN REMARK 3 TOGETHER. STRUCTURE VALIDATION WAS DONE USING MOLPROBITY. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.600 REMARK 3 NUMBER OF PARTICLES : 109350 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8B14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292124989. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX BETWEEN T5 RECEPTOR REMARK 245 BINDING PROTEIN PB5 AND ITS E. REMARK 245 COLI RECEPTOR FHUA, STABILIZED REMARK 245 WITH DETERGENT; E. COLI REMARK 245 RECEPTOR FHUA; T5 RECEPTOR REMARK 245 BINDING PROTEIN PB5 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.11 REMARK 245 SAMPLE SUPPORT DETAILS : 25 MA REMARK 245 SAMPLE VITRIFICATION DETAILS : 3.5 MICROLITERS OF THE FHUA-PB5 REMARK 245 COMPLEX WERE DEPOSITED ON A REMARK 245 FRESHLY GLOW DISCHARGED (25 MA, REMARK 245 30 SEC) CU/RH 400 MESH REMARK 245 QUANTIFOIL R 2/1 EM GRIDS AND REMARK 245 FLASH-FROZEN IN NITROGEN-COOLED REMARK 245 LIQUID ETHANE USING A REMARK 245 THERMOFISHER MARK IV VITROBOT REMARK 245 DEVICE (100% HUMIDITY, 293.15K, REMARK 245 2S BLOTTING TIME, BLOT FORCE 1). REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.50 REMARK 245 SAMPLE DETAILS : THE FHUA-PB5 COMPLEX WAS FORMED REMARK 245 BY ADDING EQUIMOLAR AMOUNTS OF THE TWO PROTEINS, WHICH RESULTS REMARK 245 IN 100% COMPLEX FORMATION. FHUA-RBPPB5 COMPLEX IS STABILIZED REMARK 245 WITH 1.6% C10DAO AT A PROTEIN CONCENTRATION OF 4.3 MG/ML REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 777 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : CALIBRATED PIXEL SIZE = REMARK 245 1.052 REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 ILE A 9 REMARK 465 THR A 10 REMARK 465 VAL A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 PRO A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 SER A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 GLY A 413 REMARK 465 SER A 414 REMARK 465 VAL A 415 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PHE B 3 REMARK 465 PHE B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 LYS B 7 REMARK 465 LEU B 8 REMARK 465 ASN B 9 REMARK 465 ASN B 10 REMARK 465 LYS B 11 REMARK 465 SER B 12 REMARK 465 ILE B 13 REMARK 465 LEU B 14 REMARK 465 SER B 15 REMARK 465 LEU B 16 REMARK 465 ARG B 17 REMARK 465 ARG B 18 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 GLY B 21 REMARK 465 GLY B 22 REMARK 465 ASP B 23 REMARK 465 THR B 24 REMARK 465 ASN B 25 REMARK 465 GLN B 26 REMARK 465 HIS B 27 REMARK 465 ILE B 28 REMARK 465 ASN B 29 REMARK 465 PRO B 30 REMARK 465 ASP B 31 REMARK 465 SER B 32 REMARK 465 GLN B 33 REMARK 465 THR B 34 REMARK 465 ILE B 35 REMARK 465 PHE B 36 REMARK 465 HIS B 37 REMARK 465 ASN B 333 REMARK 465 GLY B 334 REMARK 465 ASN B 335 REMARK 465 ASP B 336 REMARK 465 ILE B 337 REMARK 465 LYS B 338 REMARK 465 LEU B 339 REMARK 465 SER B 340 REMARK 465 PRO B 341 REMARK 465 ARG B 342 REMARK 465 GLU B 343 REMARK 465 PHE B 344 REMARK 465 ILE B 345 REMARK 465 ILE B 346 REMARK 465 LYS B 347 REMARK 465 GLY B 348 REMARK 465 VAL B 349 REMARK 465 ASN B 350 REMARK 465 VAL B 351 REMARK 465 ASN B 352 REMARK 465 ASN B 365 REMARK 465 PHE B 366 REMARK 465 ASN B 367 REMARK 465 VAL B 368 REMARK 465 GLY B 369 REMARK 465 ASN B 370 REMARK 465 ARG B 371 REMARK 465 PHE B 427 REMARK 465 LEU B 428 REMARK 465 PRO B 429 REMARK 465 SER B 430 REMARK 465 ALA B 431 REMARK 465 SER B 432 REMARK 465 TRP B 433 REMARK 465 TYR B 434 REMARK 465 VAL B 435 REMARK 465 SER B 436 REMARK 465 SER B 437 REMARK 465 ASN B 438 REMARK 465 PRO B 439 REMARK 465 PRO B 440 REMARK 465 LYS B 441 REMARK 465 ILE B 442 REMARK 465 GLY B 443 REMARK 465 ASN B 444 REMARK 465 ASN B 445 REMARK 465 TYR B 446 REMARK 465 GLY B 447 REMARK 465 ASP B 448 REMARK 465 VAL B 449 REMARK 465 TRP B 450 REMARK 465 SER B 451 REMARK 465 GLU B 452 REMARK 465 ASN B 453 REMARK 465 LEU B 454 REMARK 465 LEU B 455 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 237 HG SER B 269 1.46 REMARK 500 HH11 ARG A 384 O07 LU9 A 802 1.46 REMARK 500 HZ2 LYS B 383 O SER B 385 1.47 REMARK 500 O GLY B 198 HH TYR B 268 1.49 REMARK 500 HH TYR B 109 OE2 GLU B 235 1.49 REMARK 500 HH TYR A 234 OE1 GLN A 236 1.51 REMARK 500 OH TYR A 87 HH TYR A 275 1.52 REMARK 500 HD21 ASN B 471 OD1 ASP B 531 1.54 REMARK 500 O THR A 80 HG SER A 700 1.54 REMARK 500 OH TYR A 234 OE1 GLN A 236 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 28 -58.98 -121.78 REMARK 500 LYS A 38 6.55 59.55 REMARK 500 LEU A 70 30.60 -96.60 REMARK 500 ASP A 88 55.96 -95.63 REMARK 500 SER A 101 -167.68 -78.39 REMARK 500 ASN A 103 52.81 -94.43 REMARK 500 PHE A 115 -131.23 59.59 REMARK 500 TYR A 244 29.26 -143.09 REMARK 500 ASN A 272 30.07 -97.35 REMARK 500 ASP A 452 -101.90 56.26 REMARK 500 ASP A 607 147.03 -170.29 REMARK 500 LEU B 55 53.06 -98.21 REMARK 500 SER B 463 170.56 75.06 REMARK 500 ASN B 494 -133.32 54.80 REMARK 500 ASP B 505 -169.92 -127.30 REMARK 500 ALA B 527 31.33 -94.08 REMARK 500 TYR B 529 79.62 -102.07 REMARK 500 ASN B 609 26.78 43.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15802 RELATED DB: EMDB REMARK 900 T5 RECEPTOR BINDING PROTEIN PB5 IN COMPLEX WITH ITS E. COLI REMARK 900 RECEPTOR FHUA DBREF 8B14 A 1 723 UNP P06971 FHUA_ECOLI 34 747 DBREF 8B14 B 1 640 UNP P23207 RBP5_BPT5 1 640 SEQADV 8B14 SER A 406 UNP P06971 INSERTION SEQADV 8B14 HIS A 407 UNP P06971 INSERTION SEQADV 8B14 HIS A 408 UNP P06971 INSERTION SEQADV 8B14 HIS A 409 UNP P06971 INSERTION SEQADV 8B14 HIS A 410 UNP P06971 INSERTION SEQADV 8B14 HIS A 411 UNP P06971 INSERTION SEQADV 8B14 HIS A 412 UNP P06971 INSERTION SEQADV 8B14 GLY A 413 UNP P06971 INSERTION SEQADV 8B14 SER A 414 UNP P06971 INSERTION SEQRES 1 A 723 ALA VAL GLU PRO LYS GLU ASP THR ILE THR VAL THR ALA SEQRES 2 A 723 ALA PRO ALA PRO GLN GLU SER ALA TRP GLY PRO ALA ALA SEQRES 3 A 723 THR ILE ALA ALA ARG GLN SER ALA THR GLY THR LYS THR SEQRES 4 A 723 ASP THR PRO ILE GLN LYS VAL PRO GLN SER ILE SER VAL SEQRES 5 A 723 VAL THR ALA GLU GLU MET ALA LEU HIS GLN PRO LYS SER SEQRES 6 A 723 VAL LYS GLU ALA LEU SER TYR THR PRO GLY VAL SER VAL SEQRES 7 A 723 GLY THR ARG GLY ALA SER ASN THR TYR ASP HIS LEU ILE SEQRES 8 A 723 ILE ARG GLY PHE ALA ALA GLU GLY GLN SER GLN ASN ASN SEQRES 9 A 723 TYR LEU ASN GLY LEU LYS LEU GLN GLY ASN PHE TYR ASN SEQRES 10 A 723 ASP ALA VAL ILE ASP PRO TYR MET LEU GLU ARG ALA GLU SEQRES 11 A 723 ILE MET ARG GLY PRO VAL SER VAL LEU TYR GLY LYS SER SEQRES 12 A 723 SER PRO GLY GLY LEU LEU ASN MET VAL SER LYS ARG PRO SEQRES 13 A 723 THR THR GLU PRO LEU LYS GLU VAL GLN PHE LYS ALA GLY SEQRES 14 A 723 THR ASP SER LEU PHE GLN THR GLY PHE ASP PHE SER ASP SEQRES 15 A 723 SER LEU ASP ASP ASP GLY VAL TYR SER TYR ARG LEU THR SEQRES 16 A 723 GLY LEU ALA ARG SER ALA ASN ALA GLN GLN LYS GLY SER SEQRES 17 A 723 GLU GLU GLN ARG TYR ALA ILE ALA PRO ALA PHE THR TRP SEQRES 18 A 723 ARG PRO ASP ASP LYS THR ASN PHE THR PHE LEU SER TYR SEQRES 19 A 723 PHE GLN ASN GLU PRO GLU THR GLY TYR TYR GLY TRP LEU SEQRES 20 A 723 PRO LYS GLU GLY THR VAL GLU PRO LEU PRO ASN GLY LYS SEQRES 21 A 723 ARG LEU PRO THR ASP PHE ASN GLU GLY ALA LYS ASN ASN SEQRES 22 A 723 THR TYR SER ARG ASN GLU LYS MET VAL GLY TYR SER PHE SEQRES 23 A 723 ASP HIS GLU PHE ASN ASP THR PHE THR VAL ARG GLN ASN SEQRES 24 A 723 LEU ARG PHE ALA GLU ASN LYS THR SER GLN ASN SER VAL SEQRES 25 A 723 TYR GLY TYR GLY VAL CYS SER ASP PRO ALA ASN ALA TYR SEQRES 26 A 723 SER LYS GLN CYS ALA ALA LEU ALA PRO ALA ASP LYS GLY SEQRES 27 A 723 HIS TYR LEU ALA ARG LYS TYR VAL VAL ASP ASP GLU LYS SEQRES 28 A 723 LEU GLN ASN PHE SER VAL ASP THR GLN LEU GLN SER LYS SEQRES 29 A 723 PHE ALA THR GLY ASP ILE ASP HIS THR LEU LEU THR GLY SEQRES 30 A 723 VAL ASP PHE MET ARG MET ARG ASN ASP ILE ASN ALA TRP SEQRES 31 A 723 PHE GLY TYR ASP ASP SER VAL PRO LEU LEU ASN LEU TYR SEQRES 32 A 723 ASN PRO SER HIS HIS HIS HIS HIS HIS GLY SER VAL ASN SEQRES 33 A 723 THR ASP PHE ASP PHE ASN ALA LYS ASP PRO ALA ASN SER SEQRES 34 A 723 GLY PRO TYR ARG ILE LEU ASN LYS GLN LYS GLN THR GLY SEQRES 35 A 723 VAL TYR VAL GLN ASP GLN ALA GLN TRP ASP LYS VAL LEU SEQRES 36 A 723 VAL THR LEU GLY GLY ARG TYR ASP TRP ALA ASP GLN GLU SEQRES 37 A 723 SER LEU ASN ARG VAL ALA GLY THR THR ASP LYS ARG ASP SEQRES 38 A 723 ASP LYS GLN PHE THR TRP ARG GLY GLY VAL ASN TYR LEU SEQRES 39 A 723 PHE ASP ASN GLY VAL THR PRO TYR PHE SER TYR SER GLU SEQRES 40 A 723 SER PHE GLU PRO SER SER GLN VAL GLY LYS ASP GLY ASN SEQRES 41 A 723 ILE PHE ALA PRO SER LYS GLY LYS GLN TYR GLU VAL GLY SEQRES 42 A 723 VAL LYS TYR VAL PRO GLU ASP ARG PRO ILE VAL VAL THR SEQRES 43 A 723 GLY ALA VAL TYR ASN LEU THR LYS THR ASN ASN LEU MET SEQRES 44 A 723 ALA ASP PRO GLU GLY SER PHE PHE SER VAL GLU GLY GLY SEQRES 45 A 723 GLU ILE ARG ALA ARG GLY VAL GLU ILE GLU ALA LYS ALA SEQRES 46 A 723 ALA LEU SER ALA SER VAL ASN VAL VAL GLY SER TYR THR SEQRES 47 A 723 TYR THR ASP ALA GLU TYR THR THR ASP THR THR TYR LYS SEQRES 48 A 723 GLY ASN THR PRO ALA GLN VAL PRO LYS HIS MET ALA SER SEQRES 49 A 723 LEU TRP ALA ASP TYR THR PHE PHE ASP GLY PRO LEU SER SEQRES 50 A 723 GLY LEU THR LEU GLY THR GLY GLY ARG TYR THR GLY SER SEQRES 51 A 723 SER TYR GLY ASP PRO ALA ASN SER PHE LYS VAL GLY SER SEQRES 52 A 723 TYR THR VAL VAL ASP ALA LEU VAL ARG TYR ASP LEU ALA SEQRES 53 A 723 ARG VAL GLY MET ALA GLY SER ASN VAL ALA LEU HIS VAL SEQRES 54 A 723 ASN ASN LEU PHE ASP ARG GLU TYR VAL ALA SER CYS PHE SEQRES 55 A 723 ASN THR TYR GLY CYS PHE TRP GLY ALA GLU ARG GLN VAL SEQRES 56 A 723 VAL ALA THR ALA THR PHE ARG PHE SEQRES 1 B 640 MET SER PHE PHE ALA GLY LYS LEU ASN ASN LYS SER ILE SEQRES 2 B 640 LEU SER LEU ARG ARG GLY SER GLY GLY ASP THR ASN GLN SEQRES 3 B 640 HIS ILE ASN PRO ASP SER GLN THR ILE PHE HIS SER ASP SEQRES 4 B 640 MET SER HIS VAL ILE ILE THR GLU THR HIS SER THR GLY SEQRES 5 B 640 LEU ARG LEU ASP GLN GLY ALA GLY ASP TYR TYR TRP SER SEQRES 6 B 640 GLU MET PRO SER ARG VAL THR GLN LEU HIS ASN ASN ASP SEQRES 7 B 640 PRO ASN ARG VAL VAL LEU THR GLU ILE GLU PHE SER ASP SEQRES 8 B 640 GLY SER ARG HIS MET LEU SER GLY MET SER MET GLY VAL SEQRES 9 B 640 GLY ALA LYS ALA TYR GLY ILE ILE ASN PRO GLN ILE MET SEQRES 10 B 640 SER GLN GLY GLY LEU LYS THR GLN ILE THR ALA SER ALA SEQRES 11 B 640 ASP LEU SER LEU ASP VAL GLY TYR PHE ASN THR GLY THR SEQRES 12 B 640 SER GLY THR ILE PRO GLN LYS LEU ARG ASP GLY THR GLY SEQRES 13 B 640 CYS GLN HIS MET PHE GLY ALA PHE SER GLY ARG ARG GLY SEQRES 14 B 640 PHE ALA SER SER ALA MET TYR LEU GLY GLY ALA ALA LEU SEQRES 15 B 640 TYR LYS SER ALA TRP SER GLY SER GLY TYR VAL VAL ALA SEQRES 16 B 640 ASP ALA GLY THR LEU THR ILE PRO SER ASP TYR VAL ARG SEQRES 17 B 640 HIS PRO GLY ALA ARG ASN PHE GLY PHE ASN ALA ILE TYR SEQRES 18 B 640 VAL ARG GLY ARG SER CYS ASN ARG VAL LEU TYR GLY MET SEQRES 19 B 640 GLU GLY PRO ASN TYR THR THR GLY GLY ALA VAL GLN GLY SEQRES 20 B 640 ALA SER SER SER GLY ALA LEU ASN PHE THR TYR ASN PRO SEQRES 21 B 640 SER ASN PRO GLU SER PRO LYS TYR SER VAL GLY PHE ALA SEQRES 22 B 640 ARG ALA ASP PRO THR ASN TYR ALA TYR TRP GLU SER MET SEQRES 23 B 640 GLY ASP PRO ASN ASP SER ALA ASN GLY PRO ILE GLY ILE SEQRES 24 B 640 TYR SER GLU HIS LEU GLY ILE TYR PRO SER LYS ILE THR SEQRES 25 B 640 TRP TYR VAL THR ASN LEU VAL TYR ASN GLY SER GLY TYR SEQRES 26 B 640 ASN ILE ASP GLY GLY LEU PHE ASN GLY ASN ASP ILE LYS SEQRES 27 B 640 LEU SER PRO ARG GLU PHE ILE ILE LYS GLY VAL ASN VAL SEQRES 28 B 640 ASN ASN THR SER TRP LYS PHE ILE ASN PHE ILE GLU LYS SEQRES 29 B 640 ASN PHE ASN VAL GLY ASN ARG ALA ASP PHE ARG ASP VAL SEQRES 30 B 640 GLY CYS ASN LEU SER LYS ASP SER PRO SER THR GLY ILE SEQRES 31 B 640 SER GLY ILE ALA THR PHE GLY LEU PRO THR THR GLU SER SEQRES 32 B 640 ASN ASN ALA PRO SER ILE LYS GLY GLY ASN VAL GLY GLY SEQRES 33 B 640 LEU HIS ALA ASN VAL VAL SER ILE TYR ASN PHE LEU PRO SEQRES 34 B 640 SER ALA SER TRP TYR VAL SER SER ASN PRO PRO LYS ILE SEQRES 35 B 640 GLY ASN ASN TYR GLY ASP VAL TRP SER GLU ASN LEU LEU SEQRES 36 B 640 PRO LEU ARG LEU LEU GLY GLY SER GLY SER THR ILE LEU SEQRES 37 B 640 SER GLY ASN ILE VAL PHE GLN GLY ASN GLY SER VAL HIS SEQRES 38 B 640 VAL GLY THR VAL GLY LEU ASP LEU ASN SER SER ARG ASN SEQRES 39 B 640 GLY ALA ILE VAL CYS THR MET GLU PHE ILE ASP ASP THR SEQRES 40 B 640 TRP LEU SER ALA GLY GLY ILE GLY CYS PHE ASN PRO THR SEQRES 41 B 640 GLU MET LEU SER GLN GLY ALA GLU TYR GLY ASP SER ARG SEQRES 42 B 640 PHE ARG ILE GLY GLY ASN THR ILE ASN LYS LYS LEU HIS SEQRES 43 B 640 GLN ILE LEU SER LEU PRO ALA GLY GLU TYR VAL PRO PHE SEQRES 44 B 640 PHE THR ILE LYS GLY THR VAL VAL ASN ALA CYS LYS LEU SEQRES 45 B 640 GLN ALA ALA ALA TYR ASN PRO THR PRO TYR TRP VAL SER SEQRES 46 B 640 GLY LEU PRO GLY SER VAL GLY GLN THR GLY TYR TYR THR SEQRES 47 B 640 LEU THR TYR TYR MET ARG ASN ASP GLY ASN ASN ASN ILE SEQRES 48 B 640 SER ILE TRP LEU ASP SER SER MET SER ASN ILE ILE GLY SEQRES 49 B 640 MET LYS ALA CYS LEU PRO ASN ILE LYS LEU ILE ILE GLN SEQRES 50 B 640 ARG LEU THR HET DDQ A 801 14 HET LU9 A 802 136 HETNAM DDQ DECYLAMINE-N,N-DIMETHYL-N-OXIDE HETNAM LU9 [(2R,3S,4R,5R,6R)-2-[[(2R,4R,5R,6R)-6-[(1R)-1,2- HETNAM 2 LU9 BIS(OXIDANYL)ETHYL]-4-[(2R,4R,5R,6R)-6-[(1R)-1,2- HETNAM 3 LU9 BIS(OXIDANYL)ETHYL]-2-CARBOXY-4,5-BIS(OXIDANYL)OXAN-2- HETNAM 4 LU9 YL]OXY-2-CARBOXY-5-OXIDANYL-OXAN-2-YL]OXYMETHYL]-5- HETNAM 5 LU9 [[(3R)-3-DODECANOYLOXYTETRADECANOYL]AMINO]-4-(3- HETNAM 6 LU9 NONANOYLOXYPROPANOYLOXY)-6-[[(2R,3S,4R,5R,6R)-3- HETNAM 7 LU9 OXIDANYL-4-[(3S)-3-OXIDANYLTETRADECANOYL]OXY-5-[[(3R)- HETNAM 8 LU9 3-OXIDANYLTRIDECANOYL]AMINO]-6-PHOSPHONATOOXY-OXAN-2- HETNAM 9 LU9 YL]METHOXY]OXAN-3-YL] PHOSPHATE HETSYN LU9 LIPOPOLYSACCHARIDE FORMUL 3 DDQ C12 H27 N O FORMUL 4 LU9 C93 H164 N2 O39 P2 4- HELIX 1 AA1 ALA A 21 ILE A 28 1 8 HELIX 2 AA2 GLN A 44 VAL A 46 5 3 HELIX 3 AA3 ALA A 55 GLN A 62 1 8 HELIX 4 AA4 SER A 65 LEU A 70 1 6 HELIX 5 AA5 ALA A 97 SER A 101 5 5 HELIX 6 AA6 ASP A 122 TYR A 124 5 3 HELIX 7 AA7 VAL A 136 GLY A 141 1 6 HELIX 8 AA8 ASP A 320 ALA A 324 5 5 HELIX 9 AA9 SER A 326 ALA A 331 1 6 HELIX 10 AB1 ALA A 335 GLY A 338 5 4 HELIX 11 AB2 PRO B 68 ASP B 78 1 11 HELIX 12 AB3 THR B 146 LEU B 151 1 6 HELIX 13 AB4 ARG B 152 GLY B 154 5 3 HELIX 14 AB5 TYR B 176 LEU B 182 1 7 HELIX 15 AB6 ALA B 195 THR B 199 5 5 HELIX 16 AB7 PRO B 203 VAL B 207 5 5 HELIX 17 AB8 ASP B 506 ALA B 511 5 6 HELIX 18 AB9 ASN B 518 LEU B 523 5 6 SHEET 1 AA1 2 GLN A 32 SER A 33 0 SHEET 2 AA1 2 THR A 41 PRO A 42 -1 O THR A 41 N SER A 33 SHEET 1 AA2 5 ILE A 50 THR A 54 0 SHEET 2 AA2 5 LEU A 126 ARG A 133 -1 O ILE A 131 N SER A 51 SHEET 3 AA2 5 GLY A 147 SER A 153 -1 O ASN A 150 N GLU A 130 SHEET 4 AA2 5 ASN A 104 LEU A 106 1 N TYR A 105 O MET A 151 SHEET 5 AA2 5 LEU A 109 LYS A 110 -1 O LEU A 109 N LEU A 106 SHEET 1 AA3 2 VAL A 76 SER A 77 0 SHEET 2 AA3 2 ILE A 91 ILE A 92 -1 O ILE A 91 N SER A 77 SHEET 1 AA424 VAL A 397 ASN A 401 0 SHEET 2 AA424 TYR A 340 THR A 367 -1 N LEU A 341 O LEU A 400 SHEET 3 AA424 PHE A 294 VAL A 317 -1 N THR A 295 O GLN A 362 SHEET 4 AA424 THR A 274 GLU A 289 -1 N VAL A 282 O PHE A 302 SHEET 5 AA424 ASN A 228 THR A 241 -1 N GLN A 236 O GLU A 279 SHEET 6 AA424 GLU A 209 TRP A 221 -1 N PHE A 219 O PHE A 231 SHEET 7 AA424 TYR A 190 ASN A 202 -1 N SER A 191 O THR A 220 SHEET 8 AA424 LEU A 173 SER A 183 -1 N PHE A 180 O LEU A 194 SHEET 9 AA424 LEU A 161 GLY A 169 -1 N GLN A 165 O GLY A 177 SHEET 10 AA424 GLN A 714 PHE A 723 -1 O PHE A 723 N LYS A 162 SHEET 11 AA424 ASN A 684 ASN A 690 -1 N HIS A 688 O VAL A 716 SHEET 12 AA424 TYR A 664 ASP A 674 -1 N VAL A 671 O LEU A 687 SHEET 13 AA424 LEU A 639 THR A 648 -1 N THR A 640 O ARG A 672 SHEET 14 AA424 HIS A 621 THR A 630 -1 N TYR A 629 O LEU A 641 SHEET 15 AA424 VAL A 591 THR A 606 -1 N VAL A 594 O TRP A 626 SHEET 16 AA424 SER A 568 ALA A 585 -1 N ARG A 577 O ASP A 601 SHEET 17 AA424 ILE A 543 ALA A 560 -1 N LEU A 552 O ALA A 576 SHEET 18 AA424 SER A 525 TYR A 536 -1 N TYR A 536 O VAL A 545 SHEET 19 AA424 VAL A 499 GLU A 510 -1 N THR A 500 O LYS A 535 SHEET 20 AA424 GLN A 484 TYR A 493 -1 N GLY A 489 O TYR A 505 SHEET 21 AA424 VAL A 454 ASP A 463 -1 N THR A 457 O GLY A 490 SHEET 22 AA424 SER A 429 TRP A 451 -1 N TRP A 451 O VAL A 454 SHEET 23 AA424 ASP A 466 ASN A 471 -1 O GLU A 468 N LYS A 437 SHEET 24 AA424 THR A 476 ASP A 481 -1 O ASP A 478 N SER A 469 SHEET 1 AA5 6 VAL A 397 ASN A 401 0 SHEET 2 AA5 6 TYR A 340 THR A 367 -1 N LEU A 341 O LEU A 400 SHEET 3 AA5 6 ILE A 370 GLY A 392 -1 O LEU A 374 N SER A 363 SHEET 4 AA5 6 SER A 429 TRP A 451 -1 O GLY A 442 N ASP A 379 SHEET 5 AA5 6 ASP A 466 ASN A 471 -1 O GLU A 468 N LYS A 437 SHEET 6 AA5 6 THR A 476 ASP A 481 -1 O ASP A 478 N SER A 469 SHEET 1 AA6 2 SER A 651 TYR A 652 0 SHEET 2 AA6 2 LYS A 660 VAL A 661 -1 O VAL A 661 N SER A 651 SHEET 1 AA7 2 VAL A 698 CYS A 701 0 SHEET 2 AA7 2 CYS A 707 TRP A 709 -1 O PHE A 708 N SER A 700 SHEET 1 AA8 9 TYR B 325 ILE B 327 0 SHEET 2 AA8 9 PRO B 308 TYR B 320 -1 N VAL B 319 O ASN B 326 SHEET 3 AA8 9 ARG B 81 PHE B 89 -1 N LEU B 84 O TYR B 314 SHEET 4 AA8 9 ARG B 94 MET B 96 -1 O HIS B 95 N ILE B 87 SHEET 5 AA8 9 ARG B 375 LYS B 383 1 O GLY B 378 N MET B 96 SHEET 6 AA8 9 LEU B 417 TYR B 425 -1 O VAL B 422 N VAL B 377 SHEET 7 AA8 9 LYS B 357 ASN B 360 -1 N PHE B 358 O TYR B 425 SHEET 8 AA8 9 ILE B 44 GLY B 52 -1 N ILE B 45 O LYS B 357 SHEET 9 AA8 9 PRO B 308 TYR B 320 -1 O TRP B 313 N HIS B 49 SHEET 1 AA9 3 TYR B 63 GLU B 66 0 SHEET 2 AA9 3 ALA B 219 ARG B 223 -1 O ILE B 220 N SER B 65 SHEET 3 AA9 3 ASP B 135 PHE B 139 -1 N GLY B 137 O TYR B 221 SHEET 1 AB1 5 ILE B 112 ASN B 113 0 SHEET 2 AB1 5 MET B 117 SER B 129 -1 O MET B 117 N ASN B 113 SHEET 3 AB1 5 GLN B 158 ARG B 168 -1 O HIS B 159 N ILE B 126 SHEET 4 AB1 5 LYS B 267 ALA B 275 -1 O SER B 269 N PHE B 164 SHEET 5 AB1 5 SER B 250 TYR B 258 -1 N LEU B 254 O PHE B 272 SHEET 1 AB2 7 ILE B 112 ASN B 113 0 SHEET 2 AB2 7 MET B 117 SER B 129 -1 O MET B 117 N ASN B 113 SHEET 3 AB2 7 MET B 100 TYR B 109 -1 N GLY B 103 O THR B 127 SHEET 4 AB2 7 TYR B 556 ASN B 568 1 O LYS B 563 N VAL B 104 SHEET 5 AB2 7 GLN B 593 ASN B 605 -1 O GLY B 595 N VAL B 566 SHEET 6 AB2 7 ILE B 611 SER B 620 -1 O TRP B 614 N TYR B 602 SHEET 7 AB2 7 GLY B 478 VAL B 485 -1 N VAL B 482 O ILE B 613 SHEET 1 AB3 2 TYR B 183 LYS B 184 0 SHEET 2 AB3 2 ARG B 533 PHE B 534 -1 O ARG B 533 N LYS B 184 SHEET 1 AB4 2 ARG B 229 LEU B 231 0 SHEET 2 AB4 2 GLY B 298 TYR B 300 -1 O TYR B 300 N ARG B 229 SHEET 1 AB5 2 VAL B 245 GLY B 247 0 SHEET 2 AB5 2 ALA B 281 TRP B 283 -1 O TYR B 282 N GLN B 246 SHEET 1 AB6 2 LEU B 398 THR B 401 0 SHEET 2 AB6 2 PRO B 407 LYS B 410 -1 O LYS B 410 N LEU B 398 SHEET 1 AB7 4 GLY B 464 LEU B 468 0 SHEET 2 AB7 4 ILE B 632 ARG B 638 -1 O ILE B 632 N LEU B 468 SHEET 3 AB7 4 ALA B 496 PHE B 503 -1 N GLU B 502 O LYS B 633 SHEET 4 AB7 4 LYS B 543 SER B 550 -1 O GLN B 547 N CYS B 499 SHEET 1 AB8 2 ASN B 471 PHE B 474 0 SHEET 2 AB8 2 MET B 625 CYS B 628 -1 O ALA B 627 N ILE B 472 SSBOND 1 CYS A 318 CYS A 329 1555 1555 2.03 SSBOND 2 CYS A 701 CYS A 707 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000