HEADER VIRUS 16-SEP-22 8B38 TITLE CHAETOCEROS SOCIALIS FORMA RADIANS RNA VIRUS 1 FULL CAPSID ATOMIC TITLE 2 MODEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOCEROS SOCIALIS FORMA RADIANS RNA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 2169725; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: CHAETOCEROS SOCIALIS FORMA RADIANS RNA VIRUS 1; SOURCE 6 ORGANISM_TAXID: 2169725; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: CHAETOCEROS SOCIALIS FORMA RADIANS RNA VIRUS 1; SOURCE 9 ORGANISM_TAXID: 2169725 KEYWDS PSEUDO-T=3, ICOSAHEDRAL, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR H.WANG,K.OKAMOTO,A.MUNKE REVDAT 1 23-NOV-22 8B38 0 JRNL AUTH H.WANG,A.MUNKE,S.LI,Y.TOMARU,K.OKAMOTO JRNL TITL STRUCTURAL INSIGHTS INTO COMMON AND HOST-SPECIFIC JRNL TITL 2 RECEPTOR-BINDING MECHANISMS IN ALGAL PICORNA-LIKE VIRUSES. JRNL REF VIRUSES V. 14 2022 JRNL REFN ESSN 1999-4915 JRNL PMID 36366467 JRNL DOI 10.3390/V14112369 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 3984 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8B38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125289. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CHAETOCEROS SOCIALIS FORMA REMARK 245 RADIANS RNA VIRUS 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 180-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.807443 -0.501851 -0.310132 504.14772 REMARK 350 BIOMT2 2 -0.502065 0.308502 0.807934 75.09304 REMARK 350 BIOMT3 2 -0.309787 0.808066 -0.501060 191.55510 REMARK 350 BIOMT1 3 0.809694 -0.498166 0.310203 73.15401 REMARK 350 BIOMT2 3 -0.500232 -0.309487 0.808694 193.57334 REMARK 350 BIOMT3 3 -0.306860 -0.809968 -0.499788 502.34588 REMARK 350 BIOMT1 4 0.309050 -0.807906 0.501772 192.52921 REMARK 350 BIOMT2 4 -0.807861 -0.501413 -0.309752 504.07888 REMARK 350 BIOMT3 4 0.501845 -0.309633 -0.807638 309.22843 REMARK 350 BIOMT1 5 -0.000387 -1.000000 0.000910 385.06535 REMARK 350 BIOMT2 5 0.001328 -0.000910 -0.999999 384.04050 REMARK 350 BIOMT3 5 0.999999 -0.000386 0.001328 -1.24166 REMARK 350 BIOMT1 6 0.309097 -0.808802 -0.500298 384.64574 REMARK 350 BIOMT2 6 0.809296 0.499991 -0.308301 -0.52926 REMARK 350 BIOMT3 6 0.499499 -0.309595 0.809106 -0.02803 REMARK 350 BIOMT1 7 0.809754 -0.498651 -0.309266 191.90514 REMARK 350 BIOMT2 7 0.499455 0.309118 0.809315 -118.17054 REMARK 350 BIOMT3 7 -0.307966 -0.809810 0.499363 311.15357 REMARK 350 BIOMT1 8 0.999996 0.001541 0.002210 -0.71678 REMARK 350 BIOMT2 8 0.001541 -0.999999 0.000114 384.82871 REMARK 350 BIOMT3 8 0.002210 -0.000110 -0.999998 382.65908 REMARK 350 BIOMT1 9 0.498071 -0.308601 0.810365 0.87385 REMARK 350 BIOMT2 9 0.310802 -0.808906 -0.499072 384.08963 REMARK 350 BIOMT3 9 0.809523 0.500436 -0.306978 -1.95621 REMARK 350 BIOMT1 10 -0.310005 -0.809169 0.499141 312.52763 REMARK 350 BIOMT2 10 0.809632 -0.499903 -0.307561 191.82991 REMARK 350 BIOMT3 10 0.498391 0.308775 0.810102 -119.08931 REMARK 350 BIOMT1 11 -0.307888 -0.808588 -0.501389 503.61956 REMARK 350 BIOMT2 11 0.808551 -0.500122 0.310037 73.78285 REMARK 350 BIOMT3 11 -0.501448 -0.309942 0.807766 193.03436 REMARK 350 BIOMT1 12 0.501984 -0.307689 -0.808294 310.01478 REMARK 350 BIOMT2 12 0.309328 -0.808886 0.500019 192.98398 REMARK 350 BIOMT3 12 -0.807668 -0.501030 -0.310871 503.13104 REMARK 350 BIOMT1 13 0.308857 0.808458 -0.501002 73.36445 REMARK 350 BIOMT2 13 -0.809460 0.500009 0.307841 193.21158 REMARK 350 BIOMT3 13 0.499382 0.310462 0.808845 -119.36970 REMARK 350 BIOMT1 14 0.500541 -0.308441 0.808902 0.65171 REMARK 350 BIOMT2 14 -0.309998 0.808559 0.500134 0.77806 REMARK 350 BIOMT3 14 -0.808307 -0.501095 0.309100 384.49148 REMARK 350 BIOMT1 15 -0.307741 -0.809301 0.500328 311.88571 REMARK 350 BIOMT2 15 -0.810114 0.498657 0.308313 193.51023 REMARK 350 BIOMT3 15 -0.499010 -0.310442 -0.809083 502.38495 REMARK 350 BIOMT1 16 -0.307816 -0.810144 -0.498914 503.44911 REMARK 350 BIOMT2 16 -0.809093 0.498794 -0.310762 311.87633 REMARK 350 BIOMT3 16 0.500618 0.308010 -0.809019 190.80471 REMARK 350 BIOMT1 17 0.500610 -0.310016 -0.808257 310.71684 REMARK 350 BIOMT2 17 -0.308574 0.808439 -0.501207 192.33313 REMARK 350 BIOMT3 17 0.808808 0.500317 0.309050 -119.80733 REMARK 350 BIOMT1 18 0.001786 -0.001481 -0.999997 384.06449 REMARK 350 BIOMT2 18 -0.999998 -0.000629 -0.001786 385.62369 REMARK 350 BIOMT3 18 -0.000626 0.999999 -0.001482 -0.64138 REMARK 350 BIOMT1 19 -0.499961 0.307403 -0.809656 384.74166 REMARK 350 BIOMT2 19 -0.310515 0.809101 0.498935 1.00401 REMARK 350 BIOMT3 19 0.808468 0.500858 -0.309066 -1.43963 REMARK 350 BIOMT1 20 -0.999999 -0.001555 0.000100 385.45457 REMARK 350 BIOMT2 20 -0.001555 0.999999 -0.000491 0.39084 REMARK 350 BIOMT3 20 -0.000099 -0.000491 -1.000000 383.17072 REMARK 350 BIOMT1 21 -0.500222 0.308709 0.808998 74.50412 REMARK 350 BIOMT2 21 -0.309501 0.808824 -0.500014 192.20129 REMARK 350 BIOMT3 21 -0.808695 -0.500503 -0.309046 502.86546 REMARK 350 BIOMT1 22 0.309067 0.809413 0.499328 -118.44089 REMARK 350 BIOMT2 22 -0.808799 0.499908 -0.309735 311.40320 REMARK 350 BIOMT3 22 -0.500321 -0.308127 0.809158 192.19070 REMARK 350 BIOMT1 23 -0.808917 0.498660 -0.311435 312.00358 REMARK 350 BIOMT2 23 -0.501379 -0.308462 0.808376 193.65020 REMARK 350 BIOMT3 23 0.307039 0.810055 0.499537 -119.27121 REMARK 350 BIOMT1 24 -0.307824 0.808673 -0.501290 192.17044 REMARK 350 BIOMT2 24 -0.808499 -0.500077 -0.310246 504.03069 REMARK 350 BIOMT3 24 -0.501572 0.309791 0.807747 73.72417 REMARK 350 BIOMT1 25 -0.810519 0.498174 0.308028 193.75111 REMARK 350 BIOMT2 25 0.498228 0.309918 0.809765 -118.14327 REMARK 350 BIOMT3 25 0.307940 0.809798 -0.499399 71.91184 REMARK 350 BIOMT1 26 0.000421 1.000000 0.000519 -0.16419 REMARK 350 BIOMT2 26 0.000958 0.000519 -0.999999 383.84495 REMARK 350 BIOMT3 26 -0.999999 0.000422 -0.000958 384.21297 REMARK 350 BIOMT1 27 -0.310287 0.808153 0.500610 0.82564 REMARK 350 BIOMT2 27 0.808585 0.501284 -0.308066 -0.68907 REMARK 350 BIOMT3 27 -0.499912 0.309198 -0.809002 383.21262 REMARK 350 BIOMT1 28 0.809714 0.499480 -0.308031 -0.55215 REMARK 350 BIOMT2 28 -0.498720 0.309087 -0.809780 384.19913 REMARK 350 BIOMT3 28 -0.309261 0.809311 0.499373 -0.41329 REMARK 350 BIOMT1 29 -0.809058 0.500490 0.308114 193.00771 REMARK 350 BIOMT2 29 -0.499449 -0.309145 -0.809308 503.28992 REMARK 350 BIOMT3 29 -0.309799 -0.808665 0.500086 311.15204 REMARK 350 BIOMT1 30 -0.808972 0.500039 -0.309073 311.29374 REMARK 350 BIOMT2 30 0.500158 0.309222 -0.808841 191.66351 REMARK 350 BIOMT3 30 -0.308880 -0.808915 -0.500250 502.60535 REMARK 350 BIOMT1 31 -0.310293 0.808520 -0.500014 192.42987 REMARK 350 BIOMT2 31 0.808040 0.501397 0.309311 -118.87261 REMARK 350 BIOMT3 31 0.500789 -0.308054 -0.808896 309.37050 REMARK 350 BIOMT1 32 -0.001906 0.999998 -0.000781 0.51932 REMARK 350 BIOMT2 32 -0.001061 0.000779 0.999999 1.08229 REMARK 350 BIOMT3 32 0.999998 0.001907 0.001059 -1.63516 REMARK 350 BIOMT1 33 -0.310201 0.809615 0.498297 0.96356 REMARK 350 BIOMT2 33 -0.809064 -0.500053 0.308808 385.55120 REMARK 350 BIOMT3 33 0.499190 -0.307362 0.810147 -0.60130 REMARK 350 BIOMT1 34 -0.808905 -0.499933 0.309420 385.39114 REMARK 350 BIOMT2 34 -0.499936 0.307904 -0.809481 384.60729 REMARK 350 BIOMT3 34 0.309414 -0.809483 -0.499000 383.40479 REMARK 350 BIOMT1 35 -0.000255 0.001499 0.999999 0.79423 REMARK 350 BIOMT2 35 -0.999999 -0.000982 -0.000254 385.40212 REMARK 350 BIOMT3 35 0.000982 -0.999998 0.001500 383.62913 REMARK 350 BIOMT1 36 0.808213 0.501518 0.308661 -118.79454 REMARK 350 BIOMT2 36 -0.500625 0.309125 0.808589 74.56059 REMARK 350 BIOMT3 36 0.310107 -0.808035 0.500911 191.46038 REMARK 350 BIOMT1 37 0.499661 0.308927 -0.809260 191.90669 REMARK 350 BIOMT2 37 0.308391 0.809588 0.499462 -118.38479 REMARK 350 BIOMT3 37 0.809465 -0.499131 0.309249 72.51702 REMARK 350 BIOMT1 38 -0.500053 -0.309667 -0.808735 503.42015 REMARK 350 BIOMT2 38 0.308576 0.808867 -0.500515 73.22412 REMARK 350 BIOMT3 38 0.809152 -0.499840 -0.308921 191.11823 REMARK 350 BIOMT1 39 0.499574 0.308435 0.809502 -118.08333 REMARK 350 BIOMT2 39 0.309054 0.809515 -0.499169 72.75409 REMARK 350 BIOMT3 39 -0.809266 0.499552 0.309090 191.97772 REMARK 350 BIOMT1 40 0.498233 0.310868 0.809398 -118.25627 REMARK 350 BIOMT2 40 -0.308267 -0.809009 0.500475 311.89983 REMARK 350 BIOMT3 40 0.810392 -0.498864 -0.307245 190.37108 REMARK 350 BIOMT1 41 0.808190 0.501779 -0.308297 -0.65195 REMARK 350 BIOMT2 41 0.500053 -0.308165 0.809309 0.59821 REMARK 350 BIOMT3 41 0.311088 -0.808240 -0.499973 383.03396 REMARK 350 BIOMT1 42 0.000345 0.000927 -1.000000 383.89076 REMARK 350 BIOMT2 42 1.000000 0.000600 0.000345 -0.18968 REMARK 350 BIOMT3 42 0.000600 -0.999999 -0.000927 384.16150 REMARK 350 BIOMT1 43 -0.501614 -0.307954 0.808423 193.60779 REMARK 350 BIOMT2 43 -0.308083 -0.809635 -0.499576 503.51255 REMARK 350 BIOMT3 43 0.808374 -0.499656 0.311248 72.44154 REMARK 350 BIOMT1 44 -0.808924 -0.499663 -0.309803 503.95654 REMARK 350 BIOMT2 44 0.500729 -0.309412 -0.808415 310.58844 REMARK 350 BIOMT3 44 0.308078 -0.809074 0.500487 192.13232 REMARK 350 BIOMT1 45 -0.999998 -0.000025 -0.002217 385.60140 REMARK 350 BIOMT2 45 0.000024 -1.000000 0.000451 385.06084 REMARK 350 BIOMT3 45 -0.002217 0.000451 0.999997 0.33709 REMARK 350 BIOMT1 46 -0.498725 0.309553 -0.809599 384.10122 REMARK 350 BIOMT2 46 0.309727 -0.808734 -0.500019 384.45118 REMARK 350 BIOMT3 46 -0.809532 -0.500126 0.307459 384.86584 REMARK 350 BIOMT1 47 0.308790 0.809925 -0.498668 72.63877 REMARK 350 BIOMT2 47 0.809922 -0.498792 -0.308597 191.75418 REMARK 350 BIOMT3 47 -0.498672 -0.308590 -0.809999 502.12967 REMARK 350 BIOMT1 48 0.306659 0.809344 0.500921 -118.26817 REMARK 350 BIOMT2 48 0.809198 -0.498783 0.310507 73.31022 REMARK 350 BIOMT3 48 0.501158 0.310125 -0.807876 190.06359 REMARK 350 BIOMT1 49 -0.502521 0.308806 0.807534 75.19412 REMARK 350 BIOMT2 49 0.308767 -0.808335 0.501256 192.75053 REMARK 350 BIOMT3 49 0.807549 0.501231 0.310856 -120.08418 REMARK 350 BIOMT1 50 -0.500135 -0.310160 0.808496 193.74239 REMARK 350 BIOMT2 50 0.307352 0.809286 0.500591 -118.34098 REMARK 350 BIOMT3 50 -0.809568 0.498856 -0.309424 310.64416 REMARK 350 BIOMT1 51 -0.497729 -0.309568 -0.810206 503.23655 REMARK 350 BIOMT2 51 -0.309346 -0.809339 0.499275 312.40046 REMARK 350 BIOMT3 51 -0.810290 0.499138 0.307068 192.64603 REMARK 350 BIOMT1 52 -0.808996 -0.501332 0.306907 386.15631 REMARK 350 BIOMT2 52 0.498628 -0.308796 0.809948 0.87017 REMARK 350 BIOMT3 52 -0.311281 0.808277 0.499793 0.08669 REMARK 350 BIOMT1 53 -0.001775 -0.000789 0.999998 1.53345 REMARK 350 BIOMT2 53 0.999998 0.000980 0.001775 -0.54280 REMARK 350 BIOMT3 53 -0.000982 0.999999 0.000788 -1.01285 REMARK 350 BIOMT1 54 0.808146 0.500041 0.311220 -118.98093 REMARK 350 BIOMT2 54 0.501931 -0.308235 -0.808119 310.08117 REMARK 350 BIOMT3 54 -0.308164 0.809290 -0.500085 190.82769 REMARK 350 BIOMT1 55 0.502130 0.309137 -0.807651 191.08563 REMARK 350 BIOMT2 55 -0.307616 -0.808993 -0.500901 503.53984 REMARK 350 BIOMT3 55 -0.808231 0.499964 -0.311124 310.49868 REMARK 350 BIOMT1 56 0.001938 -0.999998 -0.000581 384.90332 REMARK 350 BIOMT2 56 -0.001308 -0.000584 0.999999 1.40264 REMARK 350 BIOMT3 56 -0.999997 -0.001937 -0.001309 384.74121 REMARK 350 BIOMT1 57 0.311454 -0.808773 -0.498881 383.91633 REMARK 350 BIOMT2 57 -0.808818 -0.501202 0.307586 385.95894 REMARK 350 BIOMT3 57 -0.498808 0.307705 -0.810252 383.53683 REMARK 350 BIOMT1 58 0.809804 -0.500033 -0.306894 191.70526 REMARK 350 BIOMT2 58 -0.498211 -0.309837 -0.809807 503.30628 REMARK 350 BIOMT3 58 0.309843 0.808683 -0.500029 71.88549 REMARK 350 BIOMT1 59 0.808164 -0.500589 0.310292 73.90112 REMARK 350 BIOMT2 59 0.501583 0.308867 -0.808094 191.32432 REMARK 350 BIOMT3 59 0.308684 0.808710 0.500702 -119.56360 REMARK 350 BIOMT1 60 0.308858 -0.809354 0.499552 193.26176 REMARK 350 BIOMT2 60 0.808372 0.500128 0.310494 -118.89575 REMARK 350 BIOMT3 60 -0.501139 0.307925 0.808728 73.81494 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 239 REMARK 465 GLY B 240 REMARK 465 PRO B 241 REMARK 465 ALA B 242 REMARK 465 SER B 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 840 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 643 77.28 47.81 REMARK 500 GLU A 653 50.91 -91.07 REMARK 500 PHE A 659 -7.47 73.20 REMARK 500 TYR A 676 117.26 -161.85 REMARK 500 PRO A 688 46.68 -85.48 REMARK 500 ASP A 689 13.29 -145.68 REMARK 500 THR A 694 67.07 62.69 REMARK 500 ALA A 706 77.70 59.04 REMARK 500 PRO A 707 152.08 -43.02 REMARK 500 ASN A 713 -61.08 -93.57 REMARK 500 PHE A 719 52.30 -92.51 REMARK 500 HIS A 722 70.08 58.19 REMARK 500 CYS A 738 49.00 -92.01 REMARK 500 ALA A 759 70.53 57.17 REMARK 500 THR A 760 142.35 -37.63 REMARK 500 ASN A 784 66.87 60.61 REMARK 500 SER A 831 -3.24 70.80 REMARK 500 THR B 38 8.87 52.31 REMARK 500 ILE B 39 -60.71 -125.34 REMARK 500 GLU B 40 48.00 -94.69 REMARK 500 GLU B 53 -11.61 72.55 REMARK 500 ASP B 73 72.88 52.56 REMARK 500 ASN B 88 53.33 -92.89 REMARK 500 SER B 165 75.65 -101.16 REMARK 500 ALA B 261 71.47 58.57 REMARK 500 ALA B 264 58.25 -95.64 REMARK 500 ARG C 344 75.19 57.64 REMARK 500 LEU C 363 53.86 -91.54 REMARK 500 HIS C 375 -4.08 72.10 REMARK 500 MET C 399 -60.46 -103.70 REMARK 500 LYS C 405 71.06 58.36 REMARK 500 SER C 431 -177.38 -69.33 REMARK 500 ARG C 503 -166.95 -129.64 REMARK 500 PRO C 534 129.42 -37.89 REMARK 500 VAL C 562 -58.70 -122.25 REMARK 500 THR C 572 -7.40 71.84 REMARK 500 PRO C 586 0.11 -63.91 REMARK 500 SER C 592 -174.98 -174.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR C 533 PRO C 534 -132.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15823 RELATED DB: EMDB REMARK 900 CHAETOCEROS SOCIALIS FORMA RADIANS RNA VIRUS 1 FULL CAPSID ATOMIC REMARK 900 MODEL DBREF 8B38 A 625 894 UNP B9A8E1 B9A8E1_9VIRU 625 894 DBREF 8B38 B 34 275 UNP B9A8E1 B9A8E1_9VIRU 34 275 DBREF 8B38 C 332 609 UNP B9A8E1 B9A8E1_9VIRU 332 609 SEQRES 1 A 270 SER PRO LEU ALA ILE ALA GLY ASN ARG ALA GLY GLY SER SEQRES 2 A 270 GLY ALA ILE THR LEU GLU PRO PHE GLY SER ASP ASN THR SEQRES 3 A 270 SER PRO GLU LEU SER LYS LEU HIS PHE GLY GLU THR TYR SEQRES 4 A 270 ASP HIS MET ARG VAL LEU VAL LYS GLY TYR ASN PHE TYR SEQRES 5 A 270 LYS ALA VAL LEU ASP ASN THR THR ILE THR ASP PRO ASP SEQRES 6 A 270 ASN PRO SER GLY THR VAL VAL ILE ARG SER THR VAL PRO SEQRES 7 A 270 ASP PHE PRO ALA PRO ARG GLY HIS ILE PRO ASN GLY PRO SEQRES 8 A 270 ASP LYS PRO PHE LEU PRO HIS PRO GLU ASN ALA ALA LEU SEQRES 9 A 270 CYS THR HIS LEU THR TRP PHE SER PRO CYS TYR VAL ALA SEQRES 10 A 270 ARG ARG GLY GLY ILE ARG TRP LYS TYR LEU HIS PHE GLY SEQRES 11 A 270 ALA ARG PHE GLY ALA THR ASP ALA PRO LYS GLY LEU GLY SEQRES 12 A 270 PHE VAL ASN ARG VAL PRO GLN VAL PRO TYR GLY ARG ARG SEQRES 13 A 270 PRO LEU GLY ASN GLU ARG LEU PRO LEU THR ASP VAL ASN SEQRES 14 A 270 GLY PHE ASN PRO THR GLU LEU SER GLN ALA PHE SER ASN SEQRES 15 A 270 GLU ASN GLY GLY VAL TYR ALA THR ASP LEU ASP VAL GLN SEQRES 16 A 270 PRO ALA ILE GLU VAL GLU LEU PRO PHE TYR SER SER LEU SEQRES 17 A 270 ARG PHE VAL ASN PRO ARG TRP ASP ASP TYR GLU LYS ILE SEQRES 18 A 270 GLY ILE HIS ARG HIS SER ILE ASP LEU LEU SER TYR ARG SEQRES 19 A 270 THR ASN GLY ALA LYS CYS GLU ASP ALA TRP MET ALA TYR SEQRES 20 A 270 VAL ALA ALA GLY ASP ASP PHE ASN LEU SER TRP MET LEU SEQRES 21 A 270 SER CYS PRO PRO PHE ARG LEU VAL ASN LEU SEQRES 1 B 242 ALA VAL LYS ASP THR ILE GLU GLY ASN SER GLU THR LEU SEQRES 2 B 242 SER GLY THR HIS GLN ASN GLU THR LEU ALA LEU TYR SER SEQRES 3 B 242 ASN VAL ASP GLN THR ALA VAL LYS ILE MET SER SER ILE SEQRES 4 B 242 ASP PRO THR ARG ALA ASP CYS VAL SER ASN ASP HIS GLU SEQRES 5 B 242 LEU GLY ASN PHE LEU SER ARG PRO VAL ARG ILE MET ARG SEQRES 6 B 242 GLU SER ILE SER LEU ASP GLU ARG THR SER THR THR ILE SEQRES 7 B 242 ALA PRO TRP ASP VAL TYR LEU ARG HIS PRO MET ILE ASN SEQRES 8 B 242 LYS LYS ILE ALA ASN TYR GLU TYR LEU ARG ALA ASN LEU SEQRES 9 B 242 VAL LEU GLU VAL VAL VAL ASN GLY GLY PRO PHE PHE TYR SEQRES 10 B 242 GLY LYS MET LEU LEU GLY TYR THR PRO PHE GLY TYR GLU SEQRES 11 B 242 ASP SER LEU LYS ASN PHE ASN ARG ILE PRO ILE GLY HIS SEQRES 12 B 242 GLN ASN THR MET LEU SER GLN GLN PRO HIS VAL LYS ILE SEQRES 13 B 242 ASP PHE CYS GLU SER THR GLY GLY VAL LEU HIS LEU PRO SEQRES 14 B 242 PHE VAL TYR ASN ARG ASN TYR MET ARG ILE SER GLU GLY SEQRES 15 B 242 SER GLY GLU PRO ALA SER MET GLY GLU LEU ARG LEU ASN SEQRES 16 B 242 THR LEU ASN ALA LEU LYS ASN ILE SER PHE THR GLY PRO SEQRES 17 B 242 ALA SER SER VAL ALA THR ILE THR VAL PHE ALA TYR LEU SEQRES 18 B 242 ASP ASN VAL GLU LEU VAL ALA PRO SER ALA ASN ASP PRO SEQRES 19 B 242 ILE THR ALA GLN GLN PRO GLU LEU SEQRES 1 C 278 CYS ARG PRO VAL VAL ILE ASP PRO PRO HIS LYS TYR ARG SEQRES 2 C 278 PRO THR TYR VAL GLY ASN MET ALA ASN ALA ASP ILE ALA SEQRES 3 C 278 GLU ALA VAL ASP LYS LEU SER LEU THR SER LYS GLN GLU SEQRES 4 C 278 LEU THR ILE ASN HIS ASP VAL ILE GLY LYS LYS SER ASP SEQRES 5 C 278 GLY ASP ASP MET HIS LEU SER THR PHE PHE GLY ARG GLU SEQRES 6 C 278 ALA TYR MET ASP ARG PHE GLU TRP LYS THR THR ASP SER SEQRES 7 C 278 TYR ASP THR LEU LEU PHE TYR THR HIS VAL HIS PRO ILE SEQRES 8 C 278 LEU PHE LYS ARG PHE GLU ALA THR SER GLY ASP TYR ASP SEQRES 9 C 278 VAL GLY MET LEU LEU PRO PRO VAL GLY TYR ALA THR ILE SEQRES 10 C 278 PRO PHE SER PHE TRP ARG GLY GLY MET THR PHE ARG PHE SEQRES 11 C 278 SER ILE VAL ALA SER ALA PHE HIS ARG GLY ARG LEU ARG SEQRES 12 C 278 ILE VAL TYR GLN PRO GLN GLY GLY LEU GLY THR VAL PRO SEQRES 13 C 278 GLY PHE SER ALA ALA PHE ASN ARG VAL ILE ASP LEU GLY SEQRES 14 C 278 ASP ALA ARG ASP PHE GLU VAL THR VAL GLU TRP ASN GLN SEQRES 15 C 278 ASN ILE ALA PHE ARG GLU VAL HIS THR THR GLY SER ASN SEQRES 16 C 278 VAL PRO SER ALA GLN TYR THR PRO GLY LEU ASP VAL GLY SEQRES 17 C 278 ARG THR SER GLN LEU PRO LEU GLY ASP GLN THR SER VAL SEQRES 18 C 278 SER ASN GLY VAL LEU ALA VAL TYR VAL VAL ASN ASP LEU SEQRES 19 C 278 VAL SER PRO ASP GLY GLY THR ASP GLU SER VAL GLU VAL SEQRES 20 C 278 ASN TRP PHE VAL LYS GLY ALA PRO SER PHE GLU VAL ALA SEQRES 21 C 278 SER ARG ASP THR LYS PHE ALA ARG TRP SER THR HIS TRP SEQRES 22 C 278 SER GLN GLU GLU PHE HELIX 1 AA1 SER A 625 ALA A 630 1 6 HELIX 2 AA2 GLY A 631 ARG A 633 5 3 HELIX 3 AA3 SER A 651 SER A 655 5 5 HELIX 4 AA4 HIS A 665 VAL A 670 1 6 HELIX 5 AA5 HIS A 731 SER A 736 1 6 HELIX 6 AA6 THR A 798 ALA A 803 1 6 HELIX 7 AA7 ASP A 841 GLY A 846 1 6 HELIX 8 AA8 ASP B 73 ALA B 77 5 5 HELIX 9 AA9 LEU B 86 LEU B 90 5 5 HELIX 10 AB1 ALA B 112 ARG B 119 1 8 HELIX 11 AB2 HIS B 120 ILE B 127 1 8 HELIX 12 AB3 ASN B 168 ILE B 172 5 5 HELIX 13 AB4 PRO B 173 SER B 182 1 10 HELIX 14 AB5 GLU B 218 MET B 222 5 5 HELIX 15 AB6 HIS C 388 PHE C 392 5 5 HELIX 16 AB7 PRO C 441 THR C 447 1 7 HELIX 17 AB8 LYS C 596 ALA C 598 5 3 SHEET 1 AA1 5 ASN A 674 VAL A 679 0 SHEET 2 AA1 5 ASP A 866 ALA A 874 -1 O TRP A 868 N VAL A 679 SHEET 3 AA1 5 ILE A 746 GLY A 754 -1 N ARG A 747 O ALA A 873 SHEET 4 AA1 5 ALA A 821 LEU A 826 -1 O LEU A 826 N ILE A 746 SHEET 5 AA1 5 ASP C 361 LYS C 362 1 O ASP C 361 N GLU A 825 SHEET 1 AA2 5 GLU A 785 LEU A 787 0 SHEET 2 AA2 5 VAL A 696 PRO A 702 -1 N VAL A 696 O LEU A 787 SHEET 3 AA2 5 ARG A 849 LEU A 855 -1 O HIS A 850 N VAL A 701 SHEET 4 AA2 5 LEU A 766 VAL A 772 -1 N LEU A 766 O LEU A 855 SHEET 5 AA2 5 TYR A 812 ASP A 815 -1 O THR A 814 N GLY A 767 SHEET 1 AA3 2 ARG A 742 ARG A 743 0 SHEET 2 AA3 2 ASN A 879 LEU A 880 -1 O ASN A 879 N ARG A 743 SHEET 1 AA4 2 THR A 790 ASP A 791 0 SHEET 2 AA4 2 GLY A 794 PHE A 795 -1 O GLY A 794 N ASP A 791 SHEET 1 AA5 2 ARG A 890 LEU A 891 0 SHEET 2 AA5 2 TRP C 600 SER C 601 -1 O SER C 601 N ARG A 890 SHEET 1 AA6 2 SER B 43 GLU B 44 0 SHEET 2 AA6 2 ALA B 65 VAL B 66 -1 O ALA B 65 N GLU B 44 SHEET 1 AA7 2 HIS B 50 GLN B 51 0 SHEET 2 AA7 2 ALA B 56 LEU B 57 -1 O LEU B 57 N HIS B 50 SHEET 1 AA8 4 VAL B 94 SER B 102 0 SHEET 2 AA8 4 VAL B 245 PRO B 262 -1 O VAL B 250 N MET B 97 SHEET 3 AA8 4 TYR B 130 ASN B 144 -1 N GLU B 140 O PHE B 251 SHEET 4 AA8 4 VAL B 198 LEU B 201 -1 O LEU B 201 N LEU B 137 SHEET 1 AA9 4 VAL B 94 SER B 102 0 SHEET 2 AA9 4 VAL B 245 PRO B 262 -1 O VAL B 250 N MET B 97 SHEET 3 AA9 4 TYR B 130 ASN B 144 -1 N GLU B 140 O PHE B 251 SHEET 4 AA9 4 MET B 210 ARG B 211 -1 O MET B 210 N LEU B 133 SHEET 1 AB1 4 SER B 108 ILE B 111 0 SHEET 2 AB1 4 GLU B 224 ASN B 231 -1 O LEU B 227 N THR B 109 SHEET 3 AB1 4 LYS B 152 THR B 158 -1 N GLY B 156 O ARG B 226 SHEET 4 AB1 4 HIS B 186 ASP B 190 -1 O ILE B 189 N MET B 153 SHEET 1 AB2 4 ALA C 397 GLU C 403 0 SHEET 2 AB2 4 GLU C 577 GLY C 584 -1 O VAL C 578 N PHE C 402 SHEET 3 AB2 4 MET C 457 VAL C 464 -1 N SER C 462 O ASN C 579 SHEET 4 AB2 4 PHE C 505 VAL C 509 -1 O VAL C 507 N PHE C 459 SHEET 1 AB3 4 LEU C 413 HIS C 418 0 SHEET 2 AB3 4 VAL C 556 VAL C 566 -1 O VAL C 559 N LEU C 414 SHEET 3 AB3 4 ARG C 470 GLN C 478 -1 N ARG C 470 O VAL C 566 SHEET 4 AB3 4 PHE C 493 LEU C 499 -1 O ILE C 497 N LEU C 473 SHEET 1 AB4 2 LYS C 425 PHE C 427 0 SHEET 2 AB4 2 GLY C 437 LEU C 439 -1 O LEU C 439 N LYS C 425 SHEET 1 AB5 3 ARG C 518 GLU C 519 0 SHEET 2 AB5 3 PHE C 452 ARG C 454 -1 N TRP C 453 O ARG C 518 SHEET 3 AB5 3 GLU C 589 VAL C 590 -1 O GLU C 589 N ARG C 454 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000