HEADER MEMBRANE PROTEIN 17-SEP-22 8B3W TITLE STRUCTURE OF METACYCLIC VSG (MVSG) 1954 FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIANT SURFACE GLYCOPROTEIN 1954; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702 KEYWDS VSG, TRYPANOSOME, TRYPANOSOMA, METACYCLIC, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CHANDRA,C.E.STEBBINS REVDAT 2 19-APR-23 8B3W 1 JRNL REVDAT 1 25-JAN-23 8B3W 0 JRNL AUTH M.CHANDRA,S.DAKOVIC,K.FOTI,J.P.ZEELEN,M.VAN STRAATEN, JRNL AUTH 2 F.ARESTA-BRANCO,E.TIHON,N.LUBBEHUSEN,T.RUPPERT,L.GLOVER, JRNL AUTH 3 F.N.PAPAVASILIOU,C.E.STEBBINS JRNL TITL STRUCTURAL SIMILARITIES BETWEEN THE METACYCLIC AND JRNL TITL 2 BLOODSTREAM FORM VARIANT SURFACE GLYCOPROTEINS OF THE JRNL TITL 3 AFRICAN TRYPANOSOME. JRNL REF PLOS NEGL TROP DIS V. 17 11093 2023 JRNL REFN ESSN 1935-2735 JRNL PMID 36780870 JRNL DOI 10.1371/JOURNAL.PNTD.0011093 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19-4092-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 70911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.2880 - 4.9136 1.00 2735 133 0.1907 0.1857 REMARK 3 2 4.9136 - 3.9002 1.00 2733 126 0.1317 0.1651 REMARK 3 3 3.9002 - 3.4073 1.00 2702 136 0.1236 0.1684 REMARK 3 4 3.4073 - 3.0958 1.00 2734 136 0.1273 0.1495 REMARK 3 5 3.0958 - 2.8739 1.00 2684 128 0.1366 0.1811 REMARK 3 6 2.8739 - 2.7044 1.00 2724 152 0.1362 0.1741 REMARK 3 7 2.7044 - 2.5690 1.00 2713 142 0.1405 0.1947 REMARK 3 8 2.5690 - 2.4572 1.00 2721 122 0.1388 0.1834 REMARK 3 9 2.4572 - 2.3626 1.00 2699 132 0.1364 0.2065 REMARK 3 10 2.3626 - 2.2810 1.00 2749 146 0.1465 0.2035 REMARK 3 11 2.2810 - 2.2097 1.00 2695 130 0.1644 0.1842 REMARK 3 12 2.2097 - 2.1465 1.00 2772 120 0.1601 0.2108 REMARK 3 13 2.1465 - 2.0900 1.00 2640 164 0.1650 0.1839 REMARK 3 14 2.0900 - 2.0390 1.00 2652 184 0.1739 0.2152 REMARK 3 15 2.0390 - 1.9927 1.00 2712 134 0.1940 0.2621 REMARK 3 16 1.9927 - 1.9503 1.00 2768 114 0.2078 0.2129 REMARK 3 17 1.9503 - 1.9113 1.00 2722 144 0.2369 0.2901 REMARK 3 18 1.9113 - 1.8752 1.00 2626 152 0.2535 0.2775 REMARK 3 19 1.8752 - 1.8417 1.00 2701 166 0.2847 0.3155 REMARK 3 20 1.8417 - 1.8105 1.00 2702 180 0.2991 0.3651 REMARK 3 21 1.8105 - 1.7813 1.00 2701 124 0.3039 0.3273 REMARK 3 22 1.7813 - 1.7539 1.00 2717 150 0.3267 0.3584 REMARK 3 23 1.7539 - 1.7281 1.00 2723 94 0.3270 0.3380 REMARK 3 24 1.7281 - 1.7037 0.99 2642 152 0.3445 0.3681 REMARK 3 25 1.7037 - 1.6810 0.88 2408 175 0.3604 0.3689 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2640 REMARK 3 ANGLE : 1.022 3577 REMARK 3 CHIRALITY : 0.058 411 REMARK 3 PLANARITY : 0.006 462 REMARK 3 DIHEDRAL : 13.369 1602 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4486 26.8543 10.1813 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.1474 REMARK 3 T33: 0.1850 T12: 0.0269 REMARK 3 T13: -0.0196 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.3116 L22: 0.2655 REMARK 3 L33: 4.5485 L12: -0.0608 REMARK 3 L13: 0.1761 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: -0.0522 S13: -0.0374 REMARK 3 S21: 0.0825 S22: 0.0769 S23: -0.0481 REMARK 3 S31: 0.2901 S32: 0.1963 S33: -0.0871 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9993 18.1260 45.8361 REMARK 3 T TENSOR REMARK 3 T11: 0.5829 T22: 0.4559 REMARK 3 T33: 0.4081 T12: 0.1065 REMARK 3 T13: -0.1028 T23: 0.1041 REMARK 3 L TENSOR REMARK 3 L11: 1.8644 L22: 1.5949 REMARK 3 L33: 3.1333 L12: 0.1255 REMARK 3 L13: 0.7621 L23: 0.8226 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: -0.4061 S13: -0.3170 REMARK 3 S21: 0.2710 S22: -0.0337 S23: -0.2167 REMARK 3 S31: 0.4480 S32: 0.1503 S33: -0.0151 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3448 27.7280 39.5976 REMARK 3 T TENSOR REMARK 3 T11: 0.3360 T22: 0.3210 REMARK 3 T33: 0.2010 T12: -0.0016 REMARK 3 T13: -0.0233 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.3545 L22: 1.1691 REMARK 3 L33: 1.9585 L12: -0.0793 REMARK 3 L13: -0.5143 L23: 0.6571 REMARK 3 S TENSOR REMARK 3 S11: -0.1054 S12: -0.1223 S13: -0.0583 REMARK 3 S21: 0.3035 S22: 0.0184 S23: 0.0850 REMARK 3 S31: 0.1722 S32: -0.2540 S33: 0.0369 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9848 21.7699 -13.6065 REMARK 3 T TENSOR REMARK 3 T11: 0.1371 T22: 0.1322 REMARK 3 T33: 0.1702 T12: -0.0035 REMARK 3 T13: -0.0024 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.5562 L22: 0.6742 REMARK 3 L33: 0.6471 L12: 0.0186 REMARK 3 L13: -0.0841 L23: 0.0685 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.0652 S13: -0.1030 REMARK 3 S21: -0.0498 S22: 0.0196 S23: 0.0366 REMARK 3 S31: 0.0282 S32: -0.0105 S33: -0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1616 32.7946 22.6925 REMARK 3 T TENSOR REMARK 3 T11: 0.2201 T22: 0.2058 REMARK 3 T33: 0.1985 T12: 0.0117 REMARK 3 T13: -0.0142 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.7743 L22: 0.6368 REMARK 3 L33: 6.1736 L12: 0.4408 REMARK 3 L13: 1.5852 L23: 1.5421 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0970 S13: 0.0026 REMARK 3 S21: 0.1110 S22: -0.0008 S23: -0.0548 REMARK 3 S31: -0.0040 S32: 0.0203 S33: 0.0701 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8B3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9198 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70911 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.681 REMARK 200 RESOLUTION RANGE LOW (A) : 60.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.19-4092-000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 0.4M SODIUM BROMIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 34.80700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 60.28749 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -34.80700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 60.28749 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 553 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 670 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 695 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 91 REMARK 465 LEU A 92 REMARK 465 THR A 93 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 GLU A 122 REMARK 465 HIS A 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 SER A 90 OG REMARK 470 ASP A 94 CG OD1 OD2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 SER A 128 OG REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ASP A 383 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 374 C1 NAG B 1 0.62 REMARK 500 HD22 ASN A 374 H1 NAG B 1 1.20 REMARK 500 O HOH A 693 O HOH A 715 1.95 REMARK 500 NE2 GLN A 359 O HOH A 501 2.12 REMARK 500 O HOH A 685 O HOH A 694 2.16 REMARK 500 O HOH A 682 O HOH A 736 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 302 59.04 39.17 REMARK 500 SER A 321 -129.65 -129.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8B3B RELATED DB: PDB DBREF 8B3W A 24 383 UNP M4T0T6 M4T0T6_9TRYP 24 383 SEQRES 1 A 360 ALA ASP VAL ALA ALA GLY SER ASN ALA GLU SER TYR ALA SEQRES 2 A 360 VAL LEU CYS THR LEU VAL GLN LEU THR LYS ALA THR LYS SEQRES 3 A 360 PRO SER VAL PRO LYS SER LYS ILE ILE ASP GLU VAL TYR SEQRES 4 A 360 ASN VAL ALA ALA ALA ILE GLY LEU ALA ILE ARG GLY ASP SEQRES 5 A 360 ALA VAL VAL LYS ASN CYS ILE ASP LYS LYS ASP SER LYS SEQRES 6 A 360 TYR SER ASP LEU THR ASP SER ASP ILE ALA LYS LYS ALA SEQRES 7 A 360 TYR THR GLU ARG THR TRP PRO VAL ALA GLN ALA GLY ALA SEQRES 8 A 360 ALA LYS LEU ALA SER SER GLY GLU LYS GLU LYS TYR ALA SEQRES 9 A 360 SER TRP THR HIS ARG LYS TYR THR GLU LYS GLN LYS LEU SEQRES 10 A 360 LYS VAL HIS VAL LEU THR ALA ALA ILE SER ASP VAL LYS SEQRES 11 A 360 GLN ARG ALA ASP LYS LEU ASN LYS PRO ASP LYS LEU ALA SEQRES 12 A 360 GLU LEU THR GLY ALA LEU SER ASN SER LEU TYR GLY ASN SEQRES 13 A 360 GLY LYS SER ASN ALA ASP THR ALA THR LEU PRO ALA GLY SEQRES 14 A 360 GLY SER HIS ILE SER MET CYS GLY PRO ALA ASP GLY THR SEQRES 15 A 360 GLN GLY GLY SER ILE VAL GLY LYS ALA LEU LYS PHE ASP SEQRES 16 A 360 LEU ILE CYS LEU CYS GLY LYS GLN SER ALA ASP SER GLY SEQRES 17 A 360 THR GLY GLU LYS ALA CYS HIS GLU PHE SER PRO LEU PRO SEQRES 18 A 360 ALA THR ALA ILE ALA GLU ASN ALA ALA ILE ASN ALA ASP SEQRES 19 A 360 TRP ALA THR ILE GLU GLN GLY CYS LYS THR VAL ALA GLY SEQRES 20 A 360 ALA PRO SER LEU THR PRO GLU SER ILE HIS ALA ALA LEU SEQRES 21 A 360 GLN ALA PHE TYR ARG HIS ALA GLY VAL PRO LYS GLY ASN SEQRES 22 A 360 THR ARG ASN ARG TYR THR THR VAL GLY ALA PRO ALA GLY SEQRES 23 A 360 SER GLY ALA THR GLY CYS ASP GLY ILE GLY GLY SER ASN SEQRES 24 A 360 GLY GLY LYS CYS ALA ALA TYR ASN LYS ALA GLN PHE GLU SEQRES 25 A 360 ALA GLY THR GLY PRO TYR TRP ALA THR GLN MET LYS ALA SEQRES 26 A 360 ALA ALA GLU THR LEU VAL GLU LEU ARG GLY GLN GLU GLN SEQRES 27 A 360 LYS LEU ALA ALA LEU GLU ALA GLU ALA LEU ALA LEU ASN SEQRES 28 A 360 SER THR LEU ASP GLY MET GLN HIS ASP HET NAG B 1 28 HET NAG B 2 28 HET BR A 401 1 HET BR A 402 1 HET BR A 403 1 HET BR A 404 1 HET BR A 405 1 HET BR A 406 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BR BROMIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 BR 6(BR 1-) FORMUL 9 HOH *250(H2 O) HELIX 1 AA1 ASN A 31 ALA A 47 1 17 HELIX 2 AA2 SER A 55 ILE A 72 1 18 HELIX 3 AA3 GLY A 74 LYS A 84 1 11 HELIX 4 AA4 ILE A 97 TYR A 102 1 6 HELIX 5 AA5 THR A 106 ALA A 118 1 13 HELIX 6 AA6 LYS A 123 ALA A 127 5 5 HELIX 7 AA7 THR A 135 LEU A 159 1 25 HELIX 8 AA8 ASP A 163 GLY A 178 1 16 HELIX 9 AA9 ASN A 183 ALA A 187 5 5 HELIX 10 AB1 SER A 194 GLY A 200 1 7 HELIX 11 AB2 ALA A 214 GLY A 224 1 11 HELIX 12 AB3 THR A 232 ALA A 236 5 5 HELIX 13 AB4 ILE A 254 GLY A 264 1 11 HELIX 14 AB5 GLY A 264 GLY A 270 1 7 HELIX 15 AB6 THR A 275 VAL A 292 1 18 HELIX 16 AB7 ASN A 330 ALA A 336 1 7 HELIX 17 AB8 PRO A 340 GLN A 381 1 42 SHEET 1 AA1 2 THR A 303 PRO A 307 0 SHEET 2 AA1 2 GLY A 324 ALA A 328 -1 O ALA A 327 N VAL A 304 SSBOND 1 CYS A 39 CYS A 265 1555 1555 2.08 SSBOND 2 CYS A 199 CYS A 221 1555 1555 2.09 SSBOND 3 CYS A 223 CYS A 237 1555 1555 2.08 SSBOND 4 CYS A 315 CYS A 326 1555 1555 2.05 LINK ND2 ASN A 374 C1 NAG B 1 1555 1555 1.48 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 2.23 CISPEP 1 LYS A 161 PRO A 162 0 7.01 CISPEP 2 SER A 241 PRO A 242 0 -8.07 CISPEP 3 GLY A 339 PRO A 340 0 -4.33 CRYST1 69.614 69.614 115.360 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014365 0.008294 0.000000 0.00000 SCALE2 0.000000 0.016587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008669 0.00000