HEADER TRANSFERASE 27-SEP-22 8B6D TITLE CRYSTAL STRUCTURE OF UDP-GLUCOSE PYROPHOSPHORYLASE FROM THERMOCRISPUM TITLE 2 AGRESTE DSM 44070 IN COMPLEX WITH UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCRISPUM AGRESTE DSM 44070; SOURCE 3 ORGANISM_TAXID: 1111738; SOURCE 4 GENE: DIU77_00305; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUGAR METABOLISM; MG2+; GALU; UTP; GLUCOSE 1-PHOSPHATE; PYRIMIDINE KEYWDS 2 NUCLEOSIDES., TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LAUSTSEN,A.KUMPF,I.BENTO REVDAT 1 17-JAN-24 8B6D 0 JRNL AUTH A.KUMPF,A.MAIER,J.U.LAUSTSEN,C.M.JEFFRIES,I.BENTO,D.TISCHLER JRNL TITL CRYSTAL STRUCTURE DETERMINATION OF A HIGHLY ACTIVE JRNL TITL 2 UDP-GLUCOSE PYROPHOSPHORYLASE FROM THERMOCRISPUM AGRESTE DSM JRNL TITL 3 44070 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.795 REMARK 3 FREE R VALUE TEST SET COUNT : 2094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2987 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4404 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.63800 REMARK 3 B22 (A**2) : 1.63800 REMARK 3 B33 (A**2) : -3.27700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.394 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4644 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4351 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6345 ; 1.855 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10146 ; 0.576 ; 1.563 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 6.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 41 ; 8.227 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;14.255 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 734 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5371 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 845 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 930 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 58 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2246 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 256 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2358 ; 2.963 ; 2.714 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2358 ; 2.954 ; 2.714 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2954 ; 4.127 ; 4.055 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2955 ; 4.127 ; 4.056 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2286 ; 4.133 ; 3.195 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2287 ; 4.132 ; 3.196 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3385 ; 6.157 ; 4.619 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3386 ; 6.156 ; 4.620 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 299 REMARK 3 RESIDUE RANGE : B 9 B 299 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5583 0.2302 -12.5082 REMARK 3 T TENSOR REMARK 3 T11: 0.0464 T22: 0.0827 REMARK 3 T33: 0.1329 T12: 0.0314 REMARK 3 T13: -0.0109 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.8962 L22: 0.7058 REMARK 3 L33: 2.9280 L12: 0.2061 REMARK 3 L13: 0.7143 L23: -0.0312 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.0868 S13: -0.0430 REMARK 3 S21: -0.0599 S22: -0.0306 S23: -0.0344 REMARK 3 S31: 0.0268 S32: 0.0139 S33: 0.0449 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 36.7043 -2.3719 19.8091 REMARK 3 T TENSOR REMARK 3 T11: 0.0169 T22: 0.1489 REMARK 3 T33: 0.1660 T12: 0.0128 REMARK 3 T13: 0.0118 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 0.9659 L22: 0.9994 REMARK 3 L33: 3.4306 L12: 0.2868 REMARK 3 L13: 0.9049 L23: 0.3683 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: -0.1020 S13: -0.0678 REMARK 3 S21: 0.0502 S22: -0.0659 S23: 0.0966 REMARK 3 S31: 0.1994 S32: -0.1697 S33: 0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8B6D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43788 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 82.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.40 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 26.90 REMARK 200 R MERGE FOR SHELL (I) : 1.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: APO-TAGALU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG 3350, PH 5.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.77600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.87600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.87600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 247.16400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.87600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.87600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.38800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.87600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.87600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 247.16400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.87600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.87600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.38800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 164.77600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 HIS A 7 REMARK 465 GLN A 8 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 HIS B 7 REMARK 465 GLN B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 207 H PHE A 209 1.32 REMARK 500 HG SER B 207 H PHE B 209 1.34 REMARK 500 H LEU B 238 O HOH B 408 1.48 REMARK 500 H GLN A 237 O HOH A 404 1.48 REMARK 500 HZ3 LYS B 33 O LEU B 264 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 214 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 261 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 97 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 151 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 214 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 214 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 39 -80.33 65.77 REMARK 500 HIS A 146 30.27 -140.21 REMARK 500 ILE A 148 -15.68 -169.86 REMARK 500 THR A 185 -167.51 -115.49 REMARK 500 VAL B 39 -81.60 72.75 REMARK 500 THR B 185 -164.80 -116.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 58 0.08 SIDE CHAIN REMARK 500 ARG A 98 0.10 SIDE CHAIN REMARK 500 ARG A 289 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 45 OE2 REMARK 620 2 LYS A 95 O 117.2 REMARK 620 3 HOH A 465 O 103.6 130.2 REMARK 620 4 HOH A 536 O 102.0 109.4 87.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8B31 RELATED DB: PDB REMARK 900 RELATED ID: 8B68 RELATED DB: PDB DBREF1 8B6D A 1 299 UNP A0A2W4LV58_9PSEU DBREF2 8B6D A A0A2W4LV58 1 299 DBREF1 8B6D B 1 299 UNP A0A2W4LV58_9PSEU DBREF2 8B6D B A0A2W4LV58 1 299 SEQADV 8B6D ASP A 260 UNP A0A2W4LV5 VAL 260 CONFLICT SEQADV 8B6D GLY A 269 UNP A0A2W4LV5 ASP 269 CONFLICT SEQADV 8B6D ASP B 260 UNP A0A2W4LV5 VAL 260 CONFLICT SEQADV 8B6D GLY B 269 UNP A0A2W4LV5 ASP 269 CONFLICT SEQRES 1 A 299 MET THR ALA SER ALA GLU HIS GLN THR PHE THR THR ALA SEQRES 2 A 299 ILE VAL PRO ALA ALA GLY LEU GLY THR ARG PHE LEU PRO SEQRES 3 A 299 THR THR LYS SER VAL PRO LYS GLU LEU LEU PRO VAL VAL SEQRES 4 A 299 ASP THR PRO ALA ILE GLU LEU VAL ALA ASP GLU ALA ARG SEQRES 5 A 299 GLN ALA GLY ALA GLU ARG LEU VAL ILE VAL THR SER PRO SEQRES 6 A 299 ALA LYS GLN SER ILE ALA ALA TYR PHE ARG PRO ALA PRO SEQRES 7 A 299 GLU LEU GLU ARG SER LEU GLU GLU LYS GLY LYS THR GLY SEQRES 8 A 299 GLN LEU ALA LYS ILE ARG ARG ALA PRO GLU LEU LEU GLU SEQRES 9 A 299 VAL GLU VAL ALA ILE GLN GLU GLN ALA LEU GLY LEU GLY SEQRES 10 A 299 HIS ALA VAL ALA CYS ALA GLU PRO ASN LEU GLY PRO GLU SEQRES 11 A 299 ASP ASP VAL VAL ALA VAL LEU LEU PRO ASP ASP LEU VAL SEQRES 12 A 299 LEU PRO HIS GLY ILE LEU GLU ARG MET ALA LYS VAL ARG SEQRES 13 A 299 ALA GLU HIS GLY GLY SER VAL LEU CYS ALA PHE ASP ILE SEQRES 14 A 299 PRO LYS GLU GLU ILE SER ALA TYR GLY VAL PHE ASP VAL SEQRES 15 A 299 SER ASP THR ASP ASP ALA ASP VAL LYS ARG VAL HIS GLY SEQRES 16 A 299 MET VAL GLU LYS PRO PRO ALA GLU GLN ALA PRO SER THR SEQRES 17 A 299 PHE ALA ALA ALA GLY ARG TYR LEU LEU ASP ARG ALA ILE SEQRES 18 A 299 PHE ASP ALA LEU ARG ARG ILE GLU PRO GLY ALA GLY GLY SEQRES 19 A 299 GLU LEU GLN LEU THR ASP ALA VAL ALA LEU LEU ILE GLN SEQRES 20 A 299 GLU GLY HIS PRO VAL HIS VAL VAL VAL HIS ARG GLY ASP SEQRES 21 A 299 ARG HIS ASP LEU GLY ASN PRO GLY GLY PHE LEU ARG ALA SEQRES 22 A 299 ALA VAL ASP PHE ALA LEU GLN ASP PRO ASP TYR GLY PRO SEQRES 23 A 299 GLU LEU ARG ALA TRP LEU THR ASP ARG ILE ALA ARG PRO SEQRES 1 B 299 MET THR ALA SER ALA GLU HIS GLN THR PHE THR THR ALA SEQRES 2 B 299 ILE VAL PRO ALA ALA GLY LEU GLY THR ARG PHE LEU PRO SEQRES 3 B 299 THR THR LYS SER VAL PRO LYS GLU LEU LEU PRO VAL VAL SEQRES 4 B 299 ASP THR PRO ALA ILE GLU LEU VAL ALA ASP GLU ALA ARG SEQRES 5 B 299 GLN ALA GLY ALA GLU ARG LEU VAL ILE VAL THR SER PRO SEQRES 6 B 299 ALA LYS GLN SER ILE ALA ALA TYR PHE ARG PRO ALA PRO SEQRES 7 B 299 GLU LEU GLU ARG SER LEU GLU GLU LYS GLY LYS THR GLY SEQRES 8 B 299 GLN LEU ALA LYS ILE ARG ARG ALA PRO GLU LEU LEU GLU SEQRES 9 B 299 VAL GLU VAL ALA ILE GLN GLU GLN ALA LEU GLY LEU GLY SEQRES 10 B 299 HIS ALA VAL ALA CYS ALA GLU PRO ASN LEU GLY PRO GLU SEQRES 11 B 299 ASP ASP VAL VAL ALA VAL LEU LEU PRO ASP ASP LEU VAL SEQRES 12 B 299 LEU PRO HIS GLY ILE LEU GLU ARG MET ALA LYS VAL ARG SEQRES 13 B 299 ALA GLU HIS GLY GLY SER VAL LEU CYS ALA PHE ASP ILE SEQRES 14 B 299 PRO LYS GLU GLU ILE SER ALA TYR GLY VAL PHE ASP VAL SEQRES 15 B 299 SER ASP THR ASP ASP ALA ASP VAL LYS ARG VAL HIS GLY SEQRES 16 B 299 MET VAL GLU LYS PRO PRO ALA GLU GLN ALA PRO SER THR SEQRES 17 B 299 PHE ALA ALA ALA GLY ARG TYR LEU LEU ASP ARG ALA ILE SEQRES 18 B 299 PHE ASP ALA LEU ARG ARG ILE GLU PRO GLY ALA GLY GLY SEQRES 19 B 299 GLU LEU GLN LEU THR ASP ALA VAL ALA LEU LEU ILE GLN SEQRES 20 B 299 GLU GLY HIS PRO VAL HIS VAL VAL VAL HIS ARG GLY ASP SEQRES 21 B 299 ARG HIS ASP LEU GLY ASN PRO GLY GLY PHE LEU ARG ALA SEQRES 22 B 299 ALA VAL ASP PHE ALA LEU GLN ASP PRO ASP TYR GLY PRO SEQRES 23 B 299 GLU LEU ARG ALA TRP LEU THR ASP ARG ILE ALA ARG PRO HET UDP A 301 36 HET GOL A 302 14 HET GOL A 303 14 HET GOL A 304 14 HET NA A 305 1 HET UDP B 301 36 HET EDO B 302 10 HET EDO B 303 10 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 NA NA 1+ FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 HOH *264(H2 O) HELIX 1 AA1 GLY A 21 LEU A 25 5 5 HELIX 2 AA2 PRO A 26 SER A 30 5 5 HELIX 3 AA3 PRO A 32 LEU A 35 5 4 HELIX 4 AA4 ALA A 43 ALA A 54 1 12 HELIX 5 AA5 SER A 64 ARG A 75 5 12 HELIX 6 AA6 ALA A 77 LYS A 87 1 11 HELIX 7 AA7 LYS A 89 ALA A 99 1 11 HELIX 8 AA8 GLY A 115 ALA A 123 1 9 HELIX 9 AA9 GLU A 124 LEU A 127 5 4 HELIX 10 AB1 ILE A 148 GLY A 160 1 13 HELIX 11 AB2 PRO A 170 ILE A 174 5 5 HELIX 12 AB3 PRO A 201 ALA A 205 5 5 HELIX 13 AB4 ALA A 220 ILE A 228 1 9 HELIX 14 AB5 GLN A 237 GLU A 248 1 12 HELIX 15 AB6 ASN A 266 ASP A 281 1 16 HELIX 16 AB7 TYR A 284 ALA A 297 1 14 HELIX 17 AB8 GLY B 21 LEU B 25 5 5 HELIX 18 AB9 PRO B 26 SER B 30 5 5 HELIX 19 AC1 PRO B 32 LEU B 35 5 4 HELIX 20 AC2 ALA B 43 ALA B 54 1 12 HELIX 21 AC3 SER B 64 LYS B 67 5 4 HELIX 22 AC4 GLN B 68 TYR B 73 1 6 HELIX 23 AC5 ALA B 77 LYS B 87 1 11 HELIX 24 AC6 LYS B 89 LEU B 103 1 15 HELIX 25 AC7 GLY B 115 ALA B 123 1 9 HELIX 26 AC8 GLU B 124 LEU B 127 5 4 HELIX 27 AC9 GLY B 147 GLY B 160 1 14 HELIX 28 AD1 PRO B 170 ILE B 174 5 5 HELIX 29 AD2 PRO B 201 ALA B 205 5 5 HELIX 30 AD3 ARG B 219 ILE B 228 1 10 HELIX 31 AD4 GLN B 237 GLU B 248 1 12 HELIX 32 AD5 ASN B 266 GLN B 280 1 15 HELIX 33 AD6 TYR B 284 ILE B 296 1 13 SHEET 1 AA110 GLU A 104 ILE A 109 0 SHEET 2 AA110 ARG A 58 THR A 63 1 N LEU A 59 O GLU A 106 SHEET 3 AA110 THR A 12 PRO A 16 1 N ALA A 13 O VAL A 60 SHEET 4 AA110 VAL A 133 LEU A 137 1 O ALA A 135 N ILE A 14 SHEET 5 AA110 PHE A 209 ASP A 218 -1 O LEU A 217 N VAL A 134 SHEET 6 AA110 GLY A 178 ASP A 184 -1 N GLY A 178 O ALA A 211 SHEET 7 AA110 VAL A 190 GLU A 198 -1 O VAL A 197 N VAL A 179 SHEET 8 AA110 VAL A 252 HIS A 257 -1 O VAL A 252 N VAL A 193 SHEET 9 AA110 SER A 162 ASP A 168 1 N ALA A 166 O HIS A 257 SHEET 10 AA110 PHE A 209 ASP A 218 -1 O LEU A 216 N VAL A 163 SHEET 1 AA2 2 PRO A 37 VAL A 38 0 SHEET 2 AA2 2 THR A 41 PRO A 42 -1 O THR A 41 N VAL A 38 SHEET 1 AA3 2 ASP A 141 LEU A 144 0 SHEET 2 AA3 2 ASP A 260 ASP A 263 -1 O ASP A 260 N LEU A 144 SHEET 1 AA410 GLU B 104 ILE B 109 0 SHEET 2 AA410 ARG B 58 THR B 63 1 N ILE B 61 O GLU B 106 SHEET 3 AA410 THR B 12 PRO B 16 1 N ALA B 13 O VAL B 60 SHEET 4 AA410 VAL B 133 LEU B 137 1 O ALA B 135 N ILE B 14 SHEET 5 AA410 PHE B 209 ASP B 218 -1 O LEU B 217 N VAL B 134 SHEET 6 AA410 GLY B 178 ASP B 184 -1 N PHE B 180 O PHE B 209 SHEET 7 AA410 VAL B 190 GLU B 198 -1 O HIS B 194 N ASP B 181 SHEET 8 AA410 VAL B 252 HIS B 257 -1 O VAL B 254 N LYS B 191 SHEET 9 AA410 SER B 162 ASP B 168 1 N ALA B 166 O HIS B 257 SHEET 10 AA410 PHE B 209 ASP B 218 -1 O LEU B 216 N VAL B 163 SHEET 1 AA5 2 PRO B 37 VAL B 38 0 SHEET 2 AA5 2 THR B 41 PRO B 42 -1 O THR B 41 N VAL B 38 SHEET 1 AA6 2 ASP B 141 LEU B 144 0 SHEET 2 AA6 2 ASP B 260 ASP B 263 -1 O HIS B 262 N LEU B 142 LINK OE2 GLU A 45 NA NA A 305 1555 1555 2.72 LINK O LYS A 95 NA NA A 305 1555 1555 2.75 LINK NA NA A 305 O HOH A 465 1555 1555 2.62 LINK NA NA A 305 O HOH A 536 1555 1555 2.74 CISPEP 1 LEU A 25 PRO A 26 0 3.85 CISPEP 2 LEU A 144 PRO A 145 0 3.15 CISPEP 3 LEU B 25 PRO B 26 0 5.19 CISPEP 4 LEU B 144 PRO B 145 0 -8.08 CRYST1 65.752 65.752 329.552 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003034 0.00000