HEADER LYASE 28-SEP-22 8B72 TITLE CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-ACYL CARRIER PROTEIN TITLE 2 DEHYDRATASE (FABA) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH TITLE 3 Z30857828 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYDECANOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE FABA,BETA- COMPND 5 HYDROXYDECANOYL THIOESTER DEHYDRASE,TRANS-2-DECENOYL-[ACYL-CARRIER- COMPND 6 PROTEIN] ISOMERASE; COMPND 7 EC: 4.2.1.59,5.3.3.14; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 5 / 1C / PRS 101 / PAO1; SOURCE 6 GENE: FABA, PA1610; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FABA, PA1610, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.ROBINSON,L.MOYNIE,J.H.NAISMITH,D.W.GRAY REVDAT 2 31-JAN-24 8B72 1 REMARK REVDAT 1 19-OCT-22 8B72 0 JRNL AUTH D.A.ROBINSON,D.W.G.GRAY JRNL TITL CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-ACYL CARRIER PROTEIN JRNL TITL 2 DEHYDRATASE (FABA) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX JRNL TITL 3 WITH Z30857828 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 87917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4533 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6551 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 609 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.523 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6727 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6385 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9098 ; 1.602 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14655 ; 1.318 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 843 ; 7.600 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;33.600 ;21.351 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1089 ;15.760 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;18.490 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 825 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7753 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1625 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8B72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92452 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 71.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.11500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4CL6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.62700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.19100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.62700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 71.19100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -31.88381 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.44435 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 136 REMARK 465 SER A 137 REMARK 465 MET B 1 REMARK 465 MET D 1 REMARK 465 MET E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 201 O HOH D 214 1.41 REMARK 500 SG CYS E 15 O HOH E 273 1.63 REMARK 500 O HOH D 280 O HOH D 316 1.70 REMARK 500 CB SER E 108 O HOH E 208 1.73 REMARK 500 O PHE C 92 O HOH C 301 1.77 REMARK 500 CB SER A 108 O HOH A 204 1.79 REMARK 500 O HOH B 311 O HOH B 405 1.83 REMARK 500 SD MET E 35 O HOH E 321 1.85 REMARK 500 C GLY E 109 O HOH E 203 1.89 REMARK 500 O HOH C 408 O HOH D 287 1.93 REMARK 500 O HOH A 210 O HOH A 303 1.93 REMARK 500 O HOH B 302 O HOH B 352 1.97 REMARK 500 O HOH A 219 O HOH A 233 2.00 REMARK 500 O HOH C 377 O HOH D 297 2.00 REMARK 500 O HOH C 325 O HOH D 301 2.01 REMARK 500 O HOH A 301 O HOH B 378 2.01 REMARK 500 O HOH E 262 O HOH E 277 2.01 REMARK 500 CB SER C 108 O HOH C 341 2.02 REMARK 500 O PRO A 62 O HOH A 201 2.03 REMARK 500 OXT PHE B 171 O HOH B 301 2.04 REMARK 500 CB SER B 108 O HOH B 353 2.05 REMARK 500 O HOH B 304 O HOH B 357 2.06 REMARK 500 O HOH C 305 O HOH C 366 2.07 REMARK 500 O HOH A 216 O HOH A 225 2.07 REMARK 500 OE2 GLU B 53 O HOH B 302 2.07 REMARK 500 OE2 GLU E 153 O HOH E 201 2.08 REMARK 500 O PRO E 100 O HOH E 202 2.09 REMARK 500 O HOH A 237 O HOH A 287 2.10 REMARK 500 N GLU E 110 O HOH E 203 2.11 REMARK 500 O HOH E 235 O HOH E 331 2.11 REMARK 500 O HOH C 334 O HOH D 246 2.14 REMARK 500 O PRO B 29 O HOH B 303 2.14 REMARK 500 O HOH C 407 O HOH D 309 2.14 REMARK 500 O HOH D 255 O HOH D 290 2.15 REMARK 500 OH TYR A 49 O HOH A 202 2.16 REMARK 500 OG1 THR D 125 O HOH D 201 2.17 REMARK 500 CA GLY E 109 O HOH E 203 2.17 REMARK 500 O HOH C 381 O HOH C 404 2.18 REMARK 500 O HOH D 229 O HOH D 277 2.18 REMARK 500 O HOH E 331 O HOH E 332 2.18 REMARK 500 O HOH B 376 O HOH B 398 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 295 O HOH E 322 2556 1.82 REMARK 500 O HOH A 201 O HOH C 361 4445 1.93 REMARK 500 O HOH E 203 O HOH E 203 2556 1.96 REMARK 500 CG LYS C 3 O HOH A 290 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 38 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 -76.35 -93.26 REMARK 500 ASP B 74 65.01 -154.63 REMARK 500 ARG B 136 -129.92 -102.23 REMARK 500 THR B 168 30.89 -79.57 REMARK 500 LYS C 48 -45.38 -29.70 REMARK 500 ASP C 74 67.66 -154.95 REMARK 500 ARG C 136 -163.88 -79.15 REMARK 500 SER C 137 -25.28 -36.30 REMARK 500 LYS D 3 -64.33 -103.08 REMARK 500 ASP D 74 62.13 -155.11 REMARK 500 ARG D 136 -120.09 -46.43 REMARK 500 ASP E 74 64.72 -151.73 REMARK 500 ASN E 135 63.72 -119.36 REMARK 500 ARG E 136 -129.64 -95.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 8B72 A 1 171 UNP O33877 FABA_PSEAE 1 171 DBREF 8B72 B 1 171 UNP O33877 FABA_PSEAE 1 171 DBREF 8B72 C 1 171 UNP O33877 FABA_PSEAE 1 171 DBREF 8B72 D 1 171 UNP O33877 FABA_PSEAE 1 171 DBREF 8B72 E 1 171 UNP O33877 FABA_PSEAE 1 171 SEQRES 1 A 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 A 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 A 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 A 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 A 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 A 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 A 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 A 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 A 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 A 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 A 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 A 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 A 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 A 171 SER PHE SEQRES 1 B 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 B 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 B 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 B 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 B 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 B 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 B 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 B 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 B 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 B 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 B 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 B 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 B 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 B 171 SER PHE SEQRES 1 C 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 C 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 C 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 C 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 C 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 C 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 C 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 C 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 C 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 C 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 C 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 C 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 C 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 C 171 SER PHE SEQRES 1 D 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 D 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 D 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 D 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 D 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 D 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 D 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 D 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 D 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 D 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 D 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 D 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 D 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 D 171 SER PHE SEQRES 1 E 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 E 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 E 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 E 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 E 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 E 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 E 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 E 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 E 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 E 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 E 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 E 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 E 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 E 171 SER PHE HET M25 B 201 16 HET DMS B 202 4 HET DMS C 201 4 HETNAM M25 N-{2-[4-(AMINOSULFONYL)PHENYL]ETHYL}ACETAMIDE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 6 M25 C10 H14 N2 O3 S FORMUL 7 DMS 2(C2 H6 O S) FORMUL 9 HOH *609(H2 O) HELIX 1 AA1 THR A 8 ARG A 17 1 10 HELIX 2 AA2 LEU A 64 HIS A 70 1 7 HELIX 3 AA3 PRO A 78 GLN A 97 1 20 HELIX 4 AA4 THR B 8 ARG B 17 1 10 HELIX 5 AA5 LEU B 64 HIS B 70 1 7 HELIX 6 AA6 PRO B 78 GLN B 97 1 20 HELIX 7 AA7 SER B 167 PHE B 171 5 5 HELIX 8 AA8 THR C 8 GLY C 18 1 11 HELIX 9 AA9 LEU C 64 HIS C 70 1 7 HELIX 10 AB1 PRO C 78 GLN C 97 1 20 HELIX 11 AB2 THR D 8 ARG D 17 1 10 HELIX 12 AB3 LEU D 64 HIS D 70 1 7 HELIX 13 AB4 PRO D 78 GLN D 97 1 20 HELIX 14 AB5 THR E 8 ARG E 17 1 10 HELIX 15 AB6 LEU E 64 HIS E 70 1 7 HELIX 16 AB7 PRO E 78 GLN E 97 1 20 SHEET 1 AA112 ARG A 38 SER A 43 0 SHEET 2 AA112 GLU A 53 ASP A 59 -1 O VAL A 55 N HIS A 41 SHEET 3 AA112 LYS A 123 ILE A 134 -1 O VAL A 124 N LEU A 58 SHEET 4 AA112 VAL A 139 VAL A 149 -1 O ILE A 142 N ARG A 132 SHEET 5 AA112 ARG A 152 PHE A 165 -1 O ALA A 157 N GLY A 145 SHEET 6 AA112 ARG A 102 SER A 108 -1 N LEU A 106 O ARG A 161 SHEET 7 AA112 VAL B 111 PHE B 113 -1 O VAL B 111 N SER A 108 SHEET 8 AA112 ARG B 152 PHE B 165 -1 O SER B 156 N LYS B 112 SHEET 9 AA112 VAL B 139 VAL B 149 -1 N ALA B 143 O LEU B 160 SHEET 10 AA112 LYS B 123 ASN B 135 -1 N HIS B 129 O ASP B 144 SHEET 11 AA112 GLU B 53 ASP B 59 -1 N LEU B 58 O VAL B 124 SHEET 12 AA112 ARG B 38 SER B 43 -1 N HIS B 41 O VAL B 55 SHEET 1 AA212 ARG A 38 SER A 43 0 SHEET 2 AA212 GLU A 53 ASP A 59 -1 O VAL A 55 N HIS A 41 SHEET 3 AA212 LYS A 123 ILE A 134 -1 O VAL A 124 N LEU A 58 SHEET 4 AA212 VAL A 139 VAL A 149 -1 O ILE A 142 N ARG A 132 SHEET 5 AA212 ARG A 152 PHE A 165 -1 O ALA A 157 N GLY A 145 SHEET 6 AA212 VAL A 111 PHE A 113 -1 N LYS A 112 O SER A 156 SHEET 7 AA212 ARG B 102 SER B 108 -1 O SER B 108 N VAL A 111 SHEET 8 AA212 ARG B 152 PHE B 165 -1 O ARG B 161 N LEU B 106 SHEET 9 AA212 VAL B 139 VAL B 149 -1 N ALA B 143 O LEU B 160 SHEET 10 AA212 LYS B 123 ASN B 135 -1 N HIS B 129 O ASP B 144 SHEET 11 AA212 GLU B 53 ASP B 59 -1 N LEU B 58 O VAL B 124 SHEET 12 AA212 ARG B 38 SER B 43 -1 N HIS B 41 O VAL B 55 SHEET 1 AA312 ARG C 38 SER C 43 0 SHEET 2 AA312 GLU C 53 ASP C 59 -1 O VAL C 55 N HIS C 41 SHEET 3 AA312 LYS C 123 ASN C 135 -1 O VAL C 124 N LEU C 58 SHEET 4 AA312 VAL C 139 VAL C 149 -1 O ASP C 144 N HIS C 129 SHEET 5 AA312 ARG C 152 PHE C 165 -1 O ILE C 154 N VAL C 147 SHEET 6 AA312 ARG C 102 SER C 108 -1 N ARG C 102 O PHE C 165 SHEET 7 AA312 VAL D 111 PHE D 113 -1 O VAL D 111 N SER C 108 SHEET 8 AA312 ARG D 152 PHE D 165 -1 O SER D 156 N LYS D 112 SHEET 9 AA312 VAL D 139 VAL D 149 -1 N VAL D 147 O ILE D 154 SHEET 10 AA312 LYS D 123 ILE D 134 -1 N HIS D 129 O ASP D 144 SHEET 11 AA312 GLU D 53 ASP D 59 -1 N LEU D 58 O VAL D 124 SHEET 12 AA312 ARG D 38 SER D 43 -1 N HIS D 41 O VAL D 55 SHEET 1 AA412 ARG C 38 SER C 43 0 SHEET 2 AA412 GLU C 53 ASP C 59 -1 O VAL C 55 N HIS C 41 SHEET 3 AA412 LYS C 123 ASN C 135 -1 O VAL C 124 N LEU C 58 SHEET 4 AA412 VAL C 139 VAL C 149 -1 O ASP C 144 N HIS C 129 SHEET 5 AA412 ARG C 152 PHE C 165 -1 O ILE C 154 N VAL C 147 SHEET 6 AA412 VAL C 111 PHE C 113 -1 N LYS C 112 O SER C 156 SHEET 7 AA412 ARG D 102 SER D 108 -1 O SER D 108 N VAL C 111 SHEET 8 AA412 ARG D 152 PHE D 165 -1 O ARG D 161 N LEU D 106 SHEET 9 AA412 VAL D 139 VAL D 149 -1 N VAL D 147 O ILE D 154 SHEET 10 AA412 LYS D 123 ILE D 134 -1 N HIS D 129 O ASP D 144 SHEET 11 AA412 GLU D 53 ASP D 59 -1 N LEU D 58 O VAL D 124 SHEET 12 AA412 ARG D 38 SER D 43 -1 N HIS D 41 O VAL D 55 SHEET 1 AA5 6 ARG E 38 SER E 43 0 SHEET 2 AA5 6 GLU E 53 ASP E 59 -1 O GLU E 57 N ARG E 38 SHEET 3 AA5 6 LYS E 123 ASN E 135 -1 O TYR E 126 N ALA E 56 SHEET 4 AA5 6 VAL E 139 VAL E 149 -1 O ASP E 144 N HIS E 129 SHEET 5 AA5 6 ARG E 152 PHE E 165 -1 O ILE E 154 N VAL E 147 SHEET 6 AA5 6 ARG E 102 GLY E 107 -1 N ARG E 102 O PHE E 165 SHEET 1 AA6 6 ARG E 38 SER E 43 0 SHEET 2 AA6 6 GLU E 53 ASP E 59 -1 O GLU E 57 N ARG E 38 SHEET 3 AA6 6 LYS E 123 ASN E 135 -1 O TYR E 126 N ALA E 56 SHEET 4 AA6 6 VAL E 139 VAL E 149 -1 O ASP E 144 N HIS E 129 SHEET 5 AA6 6 ARG E 152 PHE E 165 -1 O ILE E 154 N VAL E 147 SHEET 6 AA6 6 VAL E 111 PHE E 113 -1 N LYS E 112 O SER E 156 CISPEP 1 PRO A 31 ASN A 32 0 10.16 CISPEP 2 HIS A 70 PHE A 71 0 -8.83 CISPEP 3 PRO B 31 ASN B 32 0 12.86 CISPEP 4 HIS B 70 PHE B 71 0 -5.64 CISPEP 5 PRO C 31 ASN C 32 0 14.91 CISPEP 6 HIS C 70 PHE C 71 0 -4.68 CISPEP 7 PRO D 31 ASN D 32 0 13.80 CISPEP 8 HIS D 70 PHE D 71 0 -4.86 CISPEP 9 PRO E 31 ASN E 32 0 10.21 CISPEP 10 HIS E 70 PHE E 71 0 -9.75 CRYST1 113.254 142.382 78.236 90.00 114.05 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008830 0.000000 0.003941 0.00000 SCALE2 0.000000 0.007023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013997 0.00000