HEADER ISOMERASE 04-OCT-22 8B8H TITLE STRUCTURE OF DCS-RESISTANT VARIANT D322N OF ALANINE RACEMASE FROM M. TITLE 2 TUBERCULOSIS IN COMPLEX WITH DCS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: ALR, RV3423C, MTCY78.06; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ENZYME, ALANINE RACEMASE, PEPTIDOGLYCAN BIOSYNTHESIS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DE CHIARA,G.PROSSER,R.W.OGRODOWICZ,L.P.S.DE CARVALHO REVDAT 3 07-FEB-24 8B8H 1 REMARK REVDAT 2 05-JUL-23 8B8H 1 JRNL REVDAT 1 05-APR-23 8B8H 0 JRNL AUTH C.DE CHIARA,G.A.PROSSER,R.OGRODOWICZ,L.P.S.DE CARVALHO JRNL TITL STRUCTURE OF THE D-CYCLOSERINE-RESISTANT VARIANT D322N OF JRNL TITL 2 ALANINE RACEMASE FROM MYCOBACTERIUM TUBERCULOSIS . JRNL REF ACS BIO MED CHEM AU V. 3 233 2023 JRNL REFN ESSN 2694-2437 JRNL PMID 37363078 JRNL DOI 10.1021/ACSBIOMEDCHEMAU.2C00074 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.EVANGELOPOULOS,G.A.PROSSER,A.RODGERS,B.M.DAGG,B.KHATRI, REMARK 1 AUTH 2 M.M.HO,M.G.GUTIERREZ,T.CORTES,L.P.S.DE CARVALHO REMARK 1 TITL COMPARATIVE FITNESS ANALYSIS OF D-CYCLOSERINE RESISTANT REMARK 1 TITL 2 MUTANTS REVEALS BOTH FITNESS-NEUTRAL AND HIGH-FITNESS COST REMARK 1 TITL 3 GENOTYPES. REMARK 1 REF NAT COMMUN V. 10 4177 2019 REMARK 1 REFN ESSN 2041-1723 REMARK 1 DOI 10.1038/S41467-019-12074-Z REMARK 1 REFERENCE 2 REMARK 1 AUTH C.DE CHIARA,M.HOMSAK,G.A.PROSSER,H.L.DOUGLAS,A.GARZA-GARCIA, REMARK 1 AUTH 2 G.KELLY,A.G.PURKISS,E.W.TATE,L.P.S.DE CARVALHO REMARK 1 TITL D-CYCLOSERINE DESTRUCTION BY ALANINE RACEMASE AND THE LIMIT REMARK 1 TITL 2 OF IRREVERSIBLE INHIBITION. REMARK 1 REF NAT CHEM BIOL V. 16 686 2020 REMARK 1 REFN ESSN 1552-4469 REMARK 1 DOI 10.1038/S41589-020-0498-9 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 74848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.9300 - 5.3400 1.00 2893 144 0.2258 0.2233 REMARK 3 2 5.3400 - 4.2400 1.00 2728 141 0.1669 0.1634 REMARK 3 3 4.2400 - 3.7000 1.00 2699 141 0.1655 0.1908 REMARK 3 4 3.7000 - 3.3600 1.00 2645 155 0.1641 0.1969 REMARK 3 5 3.3600 - 3.1200 1.00 2686 139 0.1757 0.1837 REMARK 3 6 3.1200 - 2.9400 1.00 2659 130 0.1800 0.2057 REMARK 3 7 2.9400 - 2.7900 1.00 2652 137 0.1796 0.2234 REMARK 3 8 2.7900 - 2.6700 1.00 2636 133 0.1705 0.2156 REMARK 3 9 2.6700 - 2.5700 1.00 2615 152 0.1790 0.1995 REMARK 3 10 2.5700 - 2.4800 1.00 2622 139 0.1852 0.2196 REMARK 3 11 2.4800 - 2.4000 1.00 2623 143 0.1913 0.2430 REMARK 3 12 2.4000 - 2.3300 1.00 2636 138 0.2003 0.2450 REMARK 3 13 2.3300 - 2.2700 1.00 2575 154 0.2276 0.2274 REMARK 3 14 2.2700 - 2.2200 1.00 2601 151 0.2323 0.3165 REMARK 3 15 2.2200 - 2.1700 1.00 2639 134 0.2212 0.2612 REMARK 3 16 2.1700 - 2.1200 1.00 2553 155 0.2222 0.2627 REMARK 3 17 2.1200 - 2.0800 1.00 2643 122 0.2187 0.2525 REMARK 3 18 2.0800 - 2.0400 1.00 2570 158 0.2208 0.2512 REMARK 3 19 2.0400 - 2.0000 1.00 2617 149 0.2228 0.2432 REMARK 3 20 2.0000 - 1.9700 1.00 2589 131 0.2389 0.3036 REMARK 3 21 1.9700 - 1.9400 1.00 2618 142 0.2540 0.2748 REMARK 3 22 1.9400 - 1.9100 1.00 2575 134 0.2879 0.3136 REMARK 3 23 1.9100 - 1.8800 1.00 2622 150 0.3169 0.3487 REMARK 3 24 1.8800 - 1.8500 1.00 2561 133 0.3309 0.3594 REMARK 3 25 1.8500 - 1.8300 1.00 2623 125 0.3661 0.4061 REMARK 3 26 1.8300 - 1.8000 1.00 2594 131 0.3947 0.4410 REMARK 3 27 1.8000 - 1.7800 1.00 2585 128 0.4105 0.4360 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.283 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.565 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5698 REMARK 3 ANGLE : 1.107 7791 REMARK 3 CHIRALITY : 0.070 910 REMARK 3 PLANARITY : 0.011 1023 REMARK 3 DIHEDRAL : 7.915 869 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4643 1.1572 7.5738 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.2509 REMARK 3 T33: 0.2243 T12: 0.0673 REMARK 3 T13: -0.0258 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.3715 L22: 1.7168 REMARK 3 L33: 1.1388 L12: 0.0554 REMARK 3 L13: 0.3406 L23: 0.3002 REMARK 3 S TENSOR REMARK 3 S11: 0.0775 S12: 0.1347 S13: -0.0695 REMARK 3 S21: -0.0953 S22: -0.0666 S23: 0.0986 REMARK 3 S31: 0.1623 S32: 0.2736 S33: 0.0141 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4401 16.9178 10.6535 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.5174 REMARK 3 T33: 0.2598 T12: -0.0661 REMARK 3 T13: -0.0009 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: 0.7629 L22: 0.7015 REMARK 3 L33: 1.1975 L12: 0.2139 REMARK 3 L13: 0.4248 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.3120 S13: -0.0928 REMARK 3 S21: -0.1534 S22: -0.0424 S23: -0.1256 REMARK 3 S31: -0.1455 S32: 0.5476 S33: 0.0616 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8B8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292124517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74924 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 57.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SCZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM MES BUFFER PH 6.2, 150 REMARK 280 MM CACL, 10.5% (V/V) PEG SMEAR BROAD, 4.3% (V/V) GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.55500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 81.97000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 81.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.27750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 81.97000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 81.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.83250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 81.97000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.27750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 81.97000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.83250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.55500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 686 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 GLU A 384 REMARK 465 ASN A 385 REMARK 465 ARG A 386 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 HIS B 2 REMARK 465 MET B 3 REMARK 465 THR B 4 REMARK 465 PRO B 5 REMARK 465 ILE B 6 REMARK 465 SER B 7 REMARK 465 GLN B 8 REMARK 465 THR B 9 REMARK 465 PRO B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 331 REMARK 465 GLU B 384 REMARK 465 ASN B 385 REMARK 465 ARG B 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 140 CG CD1 CD2 REMARK 470 ARG A 142 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 177 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 180 CD CE NZ REMARK 470 ASP A 182 CB CG OD1 OD2 REMARK 470 ARG A 201 NE CZ NH1 NH2 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 266 CD NE CZ NH1 NH2 REMARK 470 ARG A 381 CZ NH1 NH2 REMARK 470 LEU B 12 CG CD1 CD2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 ARG B 124 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 142 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 180 CB CG CD CE NZ REMARK 470 ASP B 182 CB CG OD1 OD2 REMARK 470 GLN B 191 CG CD OE1 NE2 REMARK 470 ARG B 201 NE CZ NH1 NH2 REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 ARG B 266 NE CZ NH1 NH2 REMARK 470 ARG B 281 CD NE CZ NH1 NH2 REMARK 470 ARG B 318 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 349 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 381 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 141 19.30 59.15 REMARK 500 ARG A 142 -93.42 -74.78 REMARK 500 ASN A 143 -149.06 -105.15 REMARK 500 TYR A 177 52.16 -146.50 REMARK 500 PHE A 226 -123.83 -102.52 REMARK 500 SER A 272 -174.15 71.12 REMARK 500 PRO A 289 43.02 -86.46 REMARK 500 ASN A 322 20.92 -140.27 REMARK 500 THR A 363 -154.24 -130.67 REMARK 500 ARG A 373 -171.87 -171.61 REMARK 500 ARG B 142 -122.08 -107.32 REMARK 500 ARG B 142 -122.00 -107.42 REMARK 500 ASP B 179 17.68 -152.20 REMARK 500 PHE B 226 -123.73 -99.78 REMARK 500 SER B 272 178.71 54.48 REMARK 500 PRO B 289 47.31 -87.04 REMARK 500 ASN B 322 20.02 -141.63 REMARK 500 THR B 363 -158.09 -137.74 REMARK 500 ARG B 373 -168.75 -165.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 339 OD1 REMARK 620 2 ASP A 339 OD1 0.0 REMARK 620 3 HOH A 623 O 85.5 85.5 REMARK 620 4 HOH A 623 O 85.1 85.1 100.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8AHW RELATED DB: PDB REMARK 900 8AHW CONTAINS THE SAME PROTEIN (MUTANT D322N OF M.TUBERCULOSIS REMARK 900 ALANINE RACEMASE) IN THE ACTIVE FORM DBREF 8B8H A 3 386 UNP P9WQA9 ALR_MYCTU 3 386 DBREF 8B8H B 3 386 UNP P9WQA9 ALR_MYCTU 3 386 SEQADV 8B8H GLY A 0 UNP P9WQA9 EXPRESSION TAG SEQADV 8B8H SER A 1 UNP P9WQA9 EXPRESSION TAG SEQADV 8B8H HIS A 2 UNP P9WQA9 EXPRESSION TAG SEQADV 8B8H ASN A 322 UNP P9WQA9 ASP 322 ENGINEERED MUTATION SEQADV 8B8H GLY B 0 UNP P9WQA9 EXPRESSION TAG SEQADV 8B8H SER B 1 UNP P9WQA9 EXPRESSION TAG SEQADV 8B8H HIS B 2 UNP P9WQA9 EXPRESSION TAG SEQADV 8B8H ASN B 322 UNP P9WQA9 ASP 322 ENGINEERED MUTATION SEQRES 1 A 387 GLY SER HIS MET THR PRO ILE SER GLN THR PRO GLY LEU SEQRES 2 A 387 LEU ALA GLU ALA MET VAL ASP LEU GLY ALA ILE GLU HIS SEQRES 3 A 387 ASN VAL ARG VAL LEU ARG GLU HIS ALA GLY HIS ALA GLN SEQRES 4 A 387 LEU MET ALA VAL VAL LYS ALA ASP GLY TYR GLY HIS GLY SEQRES 5 A 387 ALA THR ARG VAL ALA GLN THR ALA LEU GLY ALA GLY ALA SEQRES 6 A 387 ALA GLU LEU GLY VAL ALA THR VAL ASP GLU ALA LEU ALA SEQRES 7 A 387 LEU ARG ALA ASP GLY ILE THR ALA PRO VAL LEU ALA TRP SEQRES 8 A 387 LEU HIS PRO PRO GLY ILE ASP PHE GLY PRO ALA LEU LEU SEQRES 9 A 387 ALA ASP VAL GLN VAL ALA VAL SER SER LEU ARG GLN LEU SEQRES 10 A 387 ASP GLU LEU LEU HIS ALA VAL ARG ARG THR GLY ARG THR SEQRES 11 A 387 ALA THR VAL THR VAL LYS VAL ASP THR GLY LEU ASN ARG SEQRES 12 A 387 ASN GLY VAL GLY PRO ALA GLN PHE PRO ALA MET LEU THR SEQRES 13 A 387 ALA LEU ARG GLN ALA MET ALA GLU ASP ALA VAL ARG LEU SEQRES 14 A 387 ARG GLY LEU MET SER HIS MET VAL TYR ALA ASP LYS PRO SEQRES 15 A 387 ASP ASP SER ILE ASN ASP VAL GLN ALA GLN ARG PHE THR SEQRES 16 A 387 ALA PHE LEU ALA GLN ALA ARG GLU GLN GLY VAL ARG PHE SEQRES 17 A 387 GLU VAL ALA HIS LEU SER ASN SER SER ALA THR MET ALA SEQRES 18 A 387 ARG PRO ASP LEU THR PHE ASP LEU VAL ARG PRO GLY ILE SEQRES 19 A 387 ALA VAL TYR GLY LEU SER PRO VAL PRO ALA LEU GLY ASP SEQRES 20 A 387 MET GLY LEU VAL PRO ALA MET THR VAL LYS CYS ALA VAL SEQRES 21 A 387 ALA LEU VAL LYS SER ILE ARG ALA GLY GLU GLY VAL SER SEQRES 22 A 387 TYR GLY HIS THR TRP ILE ALA PRO ARG ASP THR ASN LEU SEQRES 23 A 387 ALA LEU LEU PRO ILE GLY TYR ALA ASP GLY VAL PHE ARG SEQRES 24 A 387 SER LEU GLY GLY ARG LEU GLU VAL LEU ILE ASN GLY ARG SEQRES 25 A 387 ARG CYS PRO GLY VAL GLY ARG ILE CYS MET ASN GLN PHE SEQRES 26 A 387 MET VAL ASP LEU GLY PRO GLY PRO LEU ASP VAL ALA GLU SEQRES 27 A 387 GLY ASP GLU ALA ILE LEU PHE GLY PRO GLY ILE ARG GLY SEQRES 28 A 387 GLU PRO THR ALA GLN ASP TRP ALA ASP LEU VAL GLY THR SEQRES 29 A 387 ILE HIS TYR GLU VAL VAL THR SER PRO ARG GLY ARG ILE SEQRES 30 A 387 THR ARG THR TYR ARG GLU ALA GLU ASN ARG SEQRES 1 B 387 GLY SER HIS MET THR PRO ILE SER GLN THR PRO GLY LEU SEQRES 2 B 387 LEU ALA GLU ALA MET VAL ASP LEU GLY ALA ILE GLU HIS SEQRES 3 B 387 ASN VAL ARG VAL LEU ARG GLU HIS ALA GLY HIS ALA GLN SEQRES 4 B 387 LEU MET ALA VAL VAL LYS ALA ASP GLY TYR GLY HIS GLY SEQRES 5 B 387 ALA THR ARG VAL ALA GLN THR ALA LEU GLY ALA GLY ALA SEQRES 6 B 387 ALA GLU LEU GLY VAL ALA THR VAL ASP GLU ALA LEU ALA SEQRES 7 B 387 LEU ARG ALA ASP GLY ILE THR ALA PRO VAL LEU ALA TRP SEQRES 8 B 387 LEU HIS PRO PRO GLY ILE ASP PHE GLY PRO ALA LEU LEU SEQRES 9 B 387 ALA ASP VAL GLN VAL ALA VAL SER SER LEU ARG GLN LEU SEQRES 10 B 387 ASP GLU LEU LEU HIS ALA VAL ARG ARG THR GLY ARG THR SEQRES 11 B 387 ALA THR VAL THR VAL LYS VAL ASP THR GLY LEU ASN ARG SEQRES 12 B 387 ASN GLY VAL GLY PRO ALA GLN PHE PRO ALA MET LEU THR SEQRES 13 B 387 ALA LEU ARG GLN ALA MET ALA GLU ASP ALA VAL ARG LEU SEQRES 14 B 387 ARG GLY LEU MET SER HIS MET VAL TYR ALA ASP LYS PRO SEQRES 15 B 387 ASP ASP SER ILE ASN ASP VAL GLN ALA GLN ARG PHE THR SEQRES 16 B 387 ALA PHE LEU ALA GLN ALA ARG GLU GLN GLY VAL ARG PHE SEQRES 17 B 387 GLU VAL ALA HIS LEU SER ASN SER SER ALA THR MET ALA SEQRES 18 B 387 ARG PRO ASP LEU THR PHE ASP LEU VAL ARG PRO GLY ILE SEQRES 19 B 387 ALA VAL TYR GLY LEU SER PRO VAL PRO ALA LEU GLY ASP SEQRES 20 B 387 MET GLY LEU VAL PRO ALA MET THR VAL LYS CYS ALA VAL SEQRES 21 B 387 ALA LEU VAL LYS SER ILE ARG ALA GLY GLU GLY VAL SER SEQRES 22 B 387 TYR GLY HIS THR TRP ILE ALA PRO ARG ASP THR ASN LEU SEQRES 23 B 387 ALA LEU LEU PRO ILE GLY TYR ALA ASP GLY VAL PHE ARG SEQRES 24 B 387 SER LEU GLY GLY ARG LEU GLU VAL LEU ILE ASN GLY ARG SEQRES 25 B 387 ARG CYS PRO GLY VAL GLY ARG ILE CYS MET ASN GLN PHE SEQRES 26 B 387 MET VAL ASP LEU GLY PRO GLY PRO LEU ASP VAL ALA GLU SEQRES 27 B 387 GLY ASP GLU ALA ILE LEU PHE GLY PRO GLY ILE ARG GLY SEQRES 28 B 387 GLU PRO THR ALA GLN ASP TRP ALA ASP LEU VAL GLY THR SEQRES 29 B 387 ILE HIS TYR GLU VAL VAL THR SER PRO ARG GLY ARG ILE SEQRES 30 B 387 THR ARG THR TYR ARG GLU ALA GLU ASN ARG HET OJQ A 401 34 HET L7N A 402 34 HET CA A 403 1 HET CL A 404 1 HET GOL A 405 14 HET L7N B 401 34 HET CL B 402 1 HET EDO B 403 10 HET EDO B 404 10 HET EDO B 405 10 HETNAM OJQ [2-METHYL-3-OXIDANYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 2 OJQ YL]METHYL-(3-OXIDANYL-1,2-OXAZOL-4-YL)AZANIUM HETNAM L7N (~{E})-[2-METHYL-3-OXIDANYL-5-(PHOSPHONOOXYMETHYL) HETNAM 2 L7N PYRIDIN-4-YL]METHYLIDENE-[(4~{R})-3-OXIDANYLIDENE-1,2- HETNAM 3 L7N OXAZOLIDIN-4-YL]AZANIUM HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 OJQ C11 H15 N3 O7 P 1+ FORMUL 4 L7N 2(C11 H15 N3 O7 P 1+) FORMUL 5 CA CA 2+ FORMUL 6 CL 2(CL 1-) FORMUL 7 GOL C3 H8 O3 FORMUL 10 EDO 3(C2 H6 O2) FORMUL 13 HOH *343(H2 O) HELIX 1 AA1 LEU A 20 GLY A 35 1 16 HELIX 2 AA2 VAL A 43 GLY A 49 1 7 HELIX 3 AA3 GLY A 51 ALA A 62 1 12 HELIX 4 AA4 THR A 71 ASP A 81 1 11 HELIX 5 AA5 PHE A 98 ALA A 104 1 7 HELIX 6 AA6 SER A 112 GLY A 127 1 16 HELIX 7 AA7 GLN A 149 GLU A 163 1 15 HELIX 8 AA8 ASP A 183 GLN A 203 1 21 HELIX 9 AA9 ASN A 214 ARG A 221 1 8 HELIX 10 AB1 PRO A 222 THR A 225 5 4 HELIX 11 AB2 GLY A 232 GLY A 237 5 6 HELIX 12 AB3 VAL A 241 GLY A 245 5 5 HELIX 13 AB4 SER A 272 THR A 276 5 5 HELIX 14 AB5 GLY A 291 GLY A 295 5 5 HELIX 15 AB6 PHE A 297 GLY A 301 5 5 HELIX 16 AB7 THR A 353 GLY A 362 1 10 HELIX 17 AB8 ILE A 364 THR A 370 1 7 HELIX 18 AB9 LEU B 20 GLY B 35 1 16 HELIX 19 AC1 VAL B 43 GLY B 49 1 7 HELIX 20 AC2 GLY B 51 ALA B 62 1 12 HELIX 21 AC3 THR B 71 ASP B 81 1 11 HELIX 22 AC4 PHE B 98 ALA B 104 1 7 HELIX 23 AC5 SER B 112 GLY B 127 1 16 HELIX 24 AC6 GLN B 149 GLU B 163 1 15 HELIX 25 AC7 ASP B 183 GLN B 203 1 21 HELIX 26 AC8 ASN B 214 ARG B 221 1 8 HELIX 27 AC9 PRO B 222 THR B 225 5 4 HELIX 28 AD1 VAL B 241 GLY B 245 5 5 HELIX 29 AD2 SER B 272 THR B 276 5 5 HELIX 30 AD3 GLY B 291 GLY B 295 5 5 HELIX 31 AD4 PHE B 297 GLY B 301 5 5 HELIX 32 AD5 THR B 353 GLY B 362 1 10 HELIX 33 AD6 ILE B 364 THR B 370 1 7 SHEET 1 AA1 9 LEU A 261 ILE A 265 0 SHEET 2 AA1 9 THR A 283 LEU A 288 -1 O LEU A 285 N LYS A 263 SHEET 3 AA1 9 PHE A 324 GLY A 329 -1 O PHE A 324 N LEU A 288 SHEET 4 AA1 9 ARG A 311 VAL A 316 -1 N PRO A 314 O ASP A 327 SHEET 5 AA1 9 GLU A 305 ILE A 308 -1 N VAL A 306 O CYS A 313 SHEET 6 AA1 9 GLU A 340 PHE A 344 -1 O ILE A 342 N LEU A 307 SHEET 7 AA1 9 MET A 253 ALA A 258 -1 N CYS A 257 O ALA A 341 SHEET 8 AA1 9 ALA A 14 ASP A 19 -1 N GLU A 15 O LYS A 256 SHEET 9 AA1 9 ILE A 376 ARG A 381 1 O THR A 379 N VAL A 18 SHEET 1 AA2 8 VAL A 209 HIS A 211 0 SHEET 2 AA2 8 VAL A 166 MET A 172 1 N LEU A 171 O HIS A 211 SHEET 3 AA2 8 ALA A 130 LYS A 135 1 N ALA A 130 O ARG A 167 SHEET 4 AA2 8 VAL A 106 VAL A 110 1 N VAL A 110 O LYS A 135 SHEET 5 AA2 8 VAL A 87 ALA A 89 1 N ALA A 89 O ALA A 109 SHEET 6 AA2 8 GLU A 66 VAL A 69 1 N VAL A 69 O LEU A 88 SHEET 7 AA2 8 GLN A 38 VAL A 42 1 N ALA A 41 O GLY A 68 SHEET 8 AA2 8 LEU A 228 VAL A 229 1 O VAL A 229 N MET A 40 SHEET 1 AA3 2 GLY A 270 VAL A 271 0 SHEET 2 AA3 2 TRP A 277 ILE A 278 -1 O TRP A 277 N VAL A 271 SHEET 1 AA4 9 LEU B 261 ILE B 265 0 SHEET 2 AA4 9 THR B 283 LEU B 288 -1 O LEU B 285 N LYS B 263 SHEET 3 AA4 9 PHE B 324 GLY B 329 -1 O LEU B 328 N ASN B 284 SHEET 4 AA4 9 ARG B 311 VAL B 316 -1 N PRO B 314 O ASP B 327 SHEET 5 AA4 9 GLU B 305 ILE B 308 -1 N VAL B 306 O CYS B 313 SHEET 6 AA4 9 GLU B 340 PHE B 344 -1 O ILE B 342 N LEU B 307 SHEET 7 AA4 9 MET B 253 ALA B 258 -1 N CYS B 257 O ALA B 341 SHEET 8 AA4 9 ALA B 14 ASP B 19 -1 N MET B 17 O THR B 254 SHEET 9 AA4 9 ILE B 376 ARG B 381 1 O THR B 379 N VAL B 18 SHEET 1 AA5 8 VAL B 209 HIS B 211 0 SHEET 2 AA5 8 VAL B 166 MET B 172 1 N ARG B 169 O VAL B 209 SHEET 3 AA5 8 ALA B 130 LYS B 135 1 N ALA B 130 O ARG B 167 SHEET 4 AA5 8 GLN B 107 VAL B 110 1 N VAL B 110 O LYS B 135 SHEET 5 AA5 8 VAL B 87 ALA B 89 1 N VAL B 87 O GLN B 107 SHEET 6 AA5 8 GLU B 66 VAL B 69 1 N VAL B 69 O LEU B 88 SHEET 7 AA5 8 GLN B 38 VAL B 42 1 N ALA B 41 O GLY B 68 SHEET 8 AA5 8 LEU B 228 VAL B 229 1 O VAL B 229 N MET B 40 SHEET 1 AA6 2 GLY B 270 VAL B 271 0 SHEET 2 AA6 2 TRP B 277 ILE B 278 -1 O TRP B 277 N VAL B 271 LINK OD1 ASP A 339 CA CA A 403 1555 1555 2.29 LINK OD1 ASP A 339 CA CA A 403 1555 7556 2.29 LINK CA CA A 403 O HOH A 623 1555 1555 2.36 LINK CA CA A 403 O HOH A 623 1555 7556 2.36 CRYST1 163.940 163.940 57.110 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017510 0.00000