HEADER RNA BINDING PROTEIN 10-OCT-22 8BA1 TITLE CTD12-CTD12 HETERODIMER FROM CPSF73 AND CPSF100 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100 KDA COMPND 9 SUBUNIT; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 3 ORGANISM_TAXID: 6035; SOURCE 4 STRAIN: GB-M1; SOURCE 5 GENE: ECU10_0900; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LYSY; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-MCN; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 12 ORGANISM_TAXID: 6035; SOURCE 13 GENE: ECU05_0390; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: LYSY KEYWDS CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.THORE,C.MACKERETH REVDAT 2 06-DEC-23 8BA1 1 JRNL REVDAT 1 03-MAY-23 8BA1 0 JRNL AUTH S.THORE,F.RAOELIJAONA,V.TALENTON,S.FRIBOURG,C.D.MACKERETH JRNL TITL MOLECULAR DETAILS OF THE CPSF73-CPSF100 C-TERMINAL JRNL TITL 2 HETERODIMER AND INTERACTION WITH SYMPLEKIN. JRNL REF OPEN BIOLOGY V. 13 30221 2023 JRNL REFN ESSN 2046-2441 JRNL PMID 37989222 JRNL DOI 10.1098/RSOB.230221 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.THORE,F.RAOELIJAONA,V.TALENTON,S.FRIBOURG,C.MACKERETH REMARK 1 TITL MOLECULAR DETAILS OF THE CPSF73-CPSF100 C-TERMINAL REMARK 1 TITL 2 HETERODIMER AND INTERACTION WITH SYMPLEKIN REMARK 1 REF BIORXIV 2023 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2023.04.19.537554 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, ARIA 2.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292125934. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 458 UM CPSF73, 458 UM CPSF100, REMARK 210 20 MM TRIS, 150 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 100% D2O; REMARK 210 625 UM [13C-ILE; U-15N] CPSF73, REMARK 210 625 UM [13C-ILE; U-15N] CPSF100, REMARK 210 20 MM TRIS, 150 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 90% H2O/10% REMARK 210 D2O; 694 UM [13C-VAL/LEU, U-15N] REMARK 210 CPSF73, 694 UM [13C-VAL/LEU, U- REMARK 210 15N] CPSF100, 20 MM TRIS, 150 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 90% REMARK 210 H2O/10% D2O; 230 UM [U-13C; U- REMARK 210 15N] CPSF73, 230 UM [U-13C; U- REMARK 210 15N] CPSF100, 20 MM TRIS, 150 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 90% REMARK 210 H2O/10% D2O; 880 UM [U-13C; U- REMARK 210 15N] CPSF73, 880 UM [U-13C; U- REMARK 210 15N] CPSF100, 20 MM TRIS, 150 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, TOPSPIN 4.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 604 HG CYS B 605 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 453 -152.09 -89.62 REMARK 500 1 GLU A 465 165.79 -35.13 REMARK 500 1 LYS A 491 -5.10 -54.91 REMARK 500 1 SER A 550 -7.49 -56.65 REMARK 500 1 SER B 528 -75.22 -171.12 REMARK 500 1 MET B 529 -57.80 -154.61 REMARK 500 1 CYS B 605 102.29 -164.83 REMARK 500 2 HIS A 450 110.40 -161.05 REMARK 500 2 ALA A 453 -151.49 50.55 REMARK 500 2 LYS A 491 -6.31 -55.67 REMARK 500 2 ASP B 526 -97.21 63.32 REMARK 500 2 SER B 528 34.49 -91.35 REMARK 500 2 MET B 529 -117.93 52.14 REMARK 500 2 CYS B 605 101.07 -164.26 REMARK 500 3 LYS A 491 -6.57 -56.05 REMARK 500 3 SER A 550 -8.60 -52.74 REMARK 500 3 ASP B 526 -56.89 72.34 REMARK 500 3 SER B 528 115.13 -164.94 REMARK 500 3 CYS B 605 104.35 -165.46 REMARK 500 4 LEU A 452 113.20 68.49 REMARK 500 4 ALA A 453 -159.72 -82.66 REMARK 500 4 LYS A 491 -4.40 -56.82 REMARK 500 4 SER A 551 96.69 5.92 REMARK 500 4 SER B 525 62.95 -100.53 REMARK 500 4 SER B 528 -168.23 65.01 REMARK 500 4 CYS B 605 102.79 -164.79 REMARK 500 5 LEU A 452 111.83 72.25 REMARK 500 5 LYS A 491 -6.62 -55.40 REMARK 500 5 SER A 550 -9.39 -52.01 REMARK 500 5 VAL B 527 77.78 63.73 REMARK 500 5 MET B 529 -64.86 -102.36 REMARK 500 5 ASP B 604 -0.05 67.64 REMARK 500 5 CYS B 605 101.32 -165.03 REMARK 500 6 LEU A 452 124.78 72.90 REMARK 500 6 LYS A 491 -7.12 -55.17 REMARK 500 6 SER A 551 104.98 -8.20 REMARK 500 6 ASP B 526 -58.61 -127.57 REMARK 500 6 MET B 529 124.60 71.08 REMARK 500 6 GLU B 603 70.19 -25.28 REMARK 500 6 ASP B 604 36.84 71.82 REMARK 500 6 VAL B 624 62.13 -104.94 REMARK 500 7 ALA A 453 -148.09 54.78 REMARK 500 7 LYS A 491 -5.86 -54.30 REMARK 500 7 CYS B 605 99.76 -165.66 REMARK 500 8 LYS A 491 -7.01 -53.45 REMARK 500 8 SER A 551 90.20 6.32 REMARK 500 8 MET B 529 -58.20 -164.76 REMARK 500 8 GLU B 603 80.59 -41.57 REMARK 500 8 ASP B 604 36.43 75.69 REMARK 500 8 VAL B 624 -6.83 80.77 REMARK 500 REMARK 500 THIS ENTRY HAS 146 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 464 GLU A 465 1 -140.39 REMARK 500 GLU A 465 GLY A 466 1 -131.44 REMARK 500 CYS B 605 VAL B 606 1 139.46 REMARK 500 CYS B 605 VAL B 606 2 143.36 REMARK 500 PHE A 461 THR A 462 3 138.60 REMARK 500 CYS B 605 VAL B 606 3 138.91 REMARK 500 MET B 591 ARG B 592 4 -137.87 REMARK 500 CYS B 605 VAL B 606 4 134.08 REMARK 500 PHE A 461 THR A 462 5 137.22 REMARK 500 ILE B 546 GLY B 547 5 -138.40 REMARK 500 CYS B 605 VAL B 606 5 142.56 REMARK 500 GLU A 547 TRP A 548 6 -148.98 REMARK 500 CYS B 605 VAL B 606 6 -137.42 REMARK 500 PHE A 461 THR A 462 7 145.89 REMARK 500 THR A 462 GLY A 463 7 144.91 REMARK 500 CYS B 605 VAL B 606 7 143.85 REMARK 500 PHE A 461 THR A 462 8 149.82 REMARK 500 THR A 462 GLY A 463 8 148.92 REMARK 500 SER A 550 SER A 551 8 148.21 REMARK 500 CYS B 605 VAL B 606 8 -140.41 REMARK 500 CYS B 605 VAL B 606 9 -139.48 REMARK 500 CYS B 605 VAL B 606 10 139.07 REMARK 500 PHE A 461 THR A 462 11 149.82 REMARK 500 THR A 462 GLY A 463 11 148.63 REMARK 500 GLU A 465 GLY A 466 11 143.42 REMARK 500 GLU A 547 TRP A 548 11 -147.18 REMARK 500 CYS B 605 VAL B 606 11 -139.12 REMARK 500 PHE A 461 THR A 462 12 140.35 REMARK 500 THR A 462 GLY A 463 12 148.55 REMARK 500 ASP B 604 CYS B 605 12 145.35 REMARK 500 CYS B 605 VAL B 606 12 137.94 REMARK 500 PHE A 461 THR A 462 13 142.47 REMARK 500 THR A 462 GLY A 463 13 143.25 REMARK 500 CYS B 605 VAL B 606 13 -141.72 REMARK 500 GLU A 457 ALA A 458 14 -140.17 REMARK 500 PHE A 461 THR A 462 14 146.06 REMARK 500 THR A 462 GLY A 463 14 146.41 REMARK 500 CYS B 605 VAL B 606 14 140.81 REMARK 500 GLY A 463 VAL A 464 15 146.20 REMARK 500 SER A 550 SER A 551 15 149.27 REMARK 500 CYS B 605 VAL B 606 15 -140.88 REMARK 500 THR A 462 GLY A 463 16 148.18 REMARK 500 CYS B 605 VAL B 606 16 -138.64 REMARK 500 ASP B 621 SER B 622 16 -142.30 REMARK 500 THR A 462 GLY A 463 17 -148.73 REMARK 500 GLY A 463 VAL A 464 17 137.66 REMARK 500 CYS B 605 VAL B 606 17 138.18 REMARK 500 THR A 462 GLY A 463 18 -148.73 REMARK 500 GLY A 463 VAL A 464 18 137.66 REMARK 500 CYS B 605 VAL B 606 18 138.18 REMARK 500 REMARK 500 THIS ENTRY HAS 57 NON CIS, NON-TRANS OMEGA OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 51624 RELATED DB: BMRB DBREF 8BA1 A 452 567 UNP Q8SUE4 Q8SUE4_ENCCU 452 567 DBREF 8BA1 B 525 639 UNP M1JIZ1 M1JIZ1_ENCCN 525 639 SEQADV 8BA1 GLY A 449 UNP Q8SUE4 EXPRESSION TAG SEQADV 8BA1 HIS A 450 UNP Q8SUE4 EXPRESSION TAG SEQADV 8BA1 MET A 451 UNP Q8SUE4 EXPRESSION TAG SEQADV 8BA1 MET B 524 UNP M1JIZ1 INITIATING METHIONINE SEQRES 1 A 119 GLY HIS MET LEU ALA LYS ASP ASN GLU ALA LYS ILE PHE SEQRES 2 A 119 THR GLY VAL GLU GLY GLU PHE GLU GLY ILE ILE ILE GLY SEQRES 3 A 119 THR GLU ASP ASP ILE ARG ILE TYR LYS ARG ASP GLU LEU SEQRES 4 A 119 ILE GLU SER LYS TYR LYS GLU MET CYS ILE TYR GLU ARG SEQRES 5 A 119 GLN ARG ILE PRO TYR ASN SER THR ALA VAL LEU LEU LYS SEQRES 6 A 119 GLN VAL LEU VAL ASP GLY PHE GLU GLU LEU VAL GLU VAL SEQRES 7 A 119 GLU SER GLY PHE MET VAL GLY ASN VAL HIS ILE VAL LEU SEQRES 8 A 119 SER GLY GLN GLU VAL VAL LEU GLU TRP LYS SER SER TYR SEQRES 9 A 119 THR ASP ASP VAL LEU ALA ILE SER ILE SER LYS MET ILE SEQRES 10 A 119 SER ASP SEQRES 1 B 116 MET SER ASP VAL SER MET GLY MET VAL LYS LEU ASP LYS SEQRES 2 B 116 GLY PHE ASP ALA LEU ASN TYR ARG ALA ILE GLY THR ASP SEQRES 3 B 116 SER VAL ALA SER PHE ARG GLY VAL ARG ASP GLY ASP MET SEQRES 4 B 116 VAL ARG CYS ILE GLY GLU GLY PRO ARG MET VAL ILE GLY SEQRES 5 B 116 HIS ALA ASP ILE ASN GLU MET ARG ARG MET ILE VAL GLU SEQRES 6 B 116 GLY SER MET ARG VAL GLU GLN GLU GLU ASN GLY LEU LEU SEQRES 7 B 116 VAL GLU ASP CYS VAL TRP ILE ARG VAL SER GLY ASP GLY SEQRES 8 B 116 VAL THR ILE ASP GLY ARG ASP SER GLY VAL PHE TYR ALA SEQRES 9 B 116 VAL ARG ASP VAL VAL TYR ARG SER SER ALA PHE ILE HELIX 1 AA1 ARG A 484 ILE A 488 1 5 HELIX 2 AA2 THR A 508 PHE A 520 1 13 HELIX 3 AA3 SER A 551 ASP A 567 1 17 HELIX 4 AA4 LYS B 536 LEU B 541 5 6 HELIX 5 AA5 ASP B 578 GLU B 588 1 11 HELIX 6 AA6 VAL B 624 SER B 635 1 12 SHEET 1 AA1 8 ARG B 544 ILE B 546 0 SHEET 2 AA1 8 ASP B 549 ASP B 559 -1 O VAL B 551 N ARG B 544 SHEET 3 AA1 8 MET B 562 GLU B 568 -1 O ARG B 564 N VAL B 557 SHEET 4 AA1 8 GLY B 530 LEU B 534 1 N LYS B 533 O VAL B 563 SHEET 5 AA1 8 GLU A 457 ILE A 460 -1 N ILE A 460 O GLY B 530 SHEET 6 AA1 8 ILE A 479 LYS A 483 1 O ILE A 479 N LYS A 459 SHEET 7 AA1 8 GLY A 466 GLY A 474 -1 N ILE A 473 O ARG A 480 SHEET 8 AA1 8 ASP B 549 ASP B 559 -1 O SER B 550 N GLY A 474 SHEET 1 AA2 3 LYS A 493 GLU A 494 0 SHEET 2 AA2 3 MET B 572 GLY B 575 -1 O GLY B 575 N LYS A 493 SHEET 3 AA2 3 SER B 636 ILE B 639 -1 O ALA B 637 N ILE B 574 SHEET 1 AA3 9 VAL A 524 VAL A 526 0 SHEET 2 AA3 9 GLY A 529 VAL A 532 -1 O MET A 531 N VAL A 524 SHEET 3 AA3 9 VAL A 535 SER A 540 -1 O ILE A 537 N PHE A 530 SHEET 4 AA3 9 GLU A 543 TRP A 548 -1 O GLU A 543 N SER A 540 SHEET 5 AA3 9 CYS A 496 PRO A 504 -1 N ILE A 503 O VAL A 544 SHEET 6 AA3 9 GLY B 614 ASP B 618 1 O ILE B 617 N TYR A 498 SHEET 7 AA3 9 TRP B 607 SER B 611 -1 N ARG B 609 O THR B 616 SHEET 8 AA3 9 GLY B 599 VAL B 602 -1 N LEU B 600 O ILE B 608 SHEET 9 AA3 9 VAL B 593 GLU B 596 -1 N GLU B 594 O LEU B 601 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1