HEADER TRANSFERASE 11-OCT-22 8BA5 TITLE CRYSTAL STRUCTURE OF THE DNMT3A ADD DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE 3A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNMT3A,CYSTEINE METHYLTRANSFERASE DNMT3A,DNA COMPND 5 METHYLTRANSFERASE HSAIIIA,DNA MTASE HSAIIIA,M.HSAIIIA; COMPND 6 EC: 2.1.1.37,2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNMT3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.LINHARD,S.KUNERT,J.WOLLENHAUPT,A.BROEHM,H.SCHWALBE,A.JELTSCH REVDAT 3 07-FEB-24 8BA5 1 REMARK REVDAT 2 22-FEB-23 8BA5 1 JRNL REVDAT 1 23-NOV-22 8BA5 0 JRNL AUTH S.KUNERT,V.LINHARD,S.WEIRICH,M.CHOUDALAKIS,F.OSSWALD, JRNL AUTH 2 L.KRAMER,A.R.KOHLER,A.BROHM,J.WOLLENHAUPT,H.SCHWALBE, JRNL AUTH 3 A.JELTSCH JRNL TITL THE MECP2-TRD DOMAIN INTERACTS WITH THE DNMT3A-ADD DOMAIN AT JRNL TITL 2 THE H3-TAIL BINDING SITE. JRNL REF PROTEIN SCI. V. 32 E4542 2023 JRNL REFN ESSN 1469-896X JRNL PMID 36519786 JRNL DOI 10.1002/PRO.4542 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.460 REMARK 3 FREE R VALUE TEST SET COUNT : 1590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.0000 - 3.2200 1.00 4024 144 0.1664 0.1773 REMARK 3 2 3.2200 - 2.5600 1.00 4047 150 0.1802 0.2506 REMARK 3 3 2.5600 - 2.2400 1.00 4018 148 0.1883 0.2058 REMARK 3 4 2.2400 - 2.0300 1.00 4028 148 0.1868 0.1863 REMARK 3 5 2.0300 - 1.8900 1.00 4040 145 0.1817 0.1927 REMARK 3 6 1.8900 - 1.7700 1.00 4021 139 0.1976 0.2482 REMARK 3 7 1.7700 - 1.6900 1.00 4037 144 0.2037 0.2513 REMARK 3 8 1.6900 - 1.6100 1.00 3992 138 0.2096 0.2549 REMARK 3 9 1.6100 - 1.5500 1.00 4071 146 0.2412 0.2686 REMARK 3 10 1.5500 - 1.5000 1.00 4032 144 0.2689 0.3017 REMARK 3 11 1.5000 - 1.4500 1.00 4009 144 0.3128 0.3482 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.197 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.618 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1115 REMARK 3 ANGLE : 0.806 1503 REMARK 3 CHIRALITY : 0.079 153 REMARK 3 PLANARITY : 0.008 201 REMARK 3 DIHEDRAL : 12.161 418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 474 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0011 -12.0321 -6.6225 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: 0.3129 REMARK 3 T33: 0.2662 T12: -0.1133 REMARK 3 T13: -0.0410 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 3.6425 L22: 6.3741 REMARK 3 L33: 0.8966 L12: 1.8864 REMARK 3 L13: -0.4979 L23: -2.3701 REMARK 3 S TENSOR REMARK 3 S11: -0.4905 S12: 0.9781 S13: 0.4359 REMARK 3 S21: -0.4659 S22: 0.0064 S23: -0.5614 REMARK 3 S31: -0.4502 S32: 0.9649 S33: 0.3603 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 485 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4139 -6.9162 0.8533 REMARK 3 T TENSOR REMARK 3 T11: 0.4333 T22: 0.2270 REMARK 3 T33: 0.3351 T12: -0.0922 REMARK 3 T13: -0.2087 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 4.3001 L22: 6.9352 REMARK 3 L33: 3.2180 L12: 2.2292 REMARK 3 L13: -0.8884 L23: -0.9155 REMARK 3 S TENSOR REMARK 3 S11: -0.5058 S12: -0.1810 S13: 0.5863 REMARK 3 S21: 0.1505 S22: -0.1279 S23: -0.6444 REMARK 3 S31: -0.6567 S32: 0.3064 S33: -0.1187 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 493 THROUGH 511 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6098 -9.1626 -0.6421 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.1993 REMARK 3 T33: 0.2365 T12: 0.0244 REMARK 3 T13: -0.0807 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 2.4572 L22: 1.1486 REMARK 3 L33: 2.2518 L12: -0.4237 REMARK 3 L13: 0.7727 L23: -0.1086 REMARK 3 S TENSOR REMARK 3 S11: -0.3905 S12: -0.1818 S13: 0.4048 REMARK 3 S21: 0.0245 S22: -0.0959 S23: 0.0103 REMARK 3 S31: -0.9117 S32: -0.1958 S33: 0.2505 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 512 THROUGH 524 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2296 -10.4815 -4.2643 REMARK 3 T TENSOR REMARK 3 T11: 0.3604 T22: 0.2540 REMARK 3 T33: 0.2568 T12: 0.0900 REMARK 3 T13: -0.0417 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.3452 L22: 5.1055 REMARK 3 L33: 3.3653 L12: 3.8187 REMARK 3 L13: 2.0402 L23: 1.2445 REMARK 3 S TENSOR REMARK 3 S11: -0.3031 S12: -0.2459 S13: 0.2297 REMARK 3 S21: 0.0035 S22: -0.0096 S23: 0.2136 REMARK 3 S31: -0.2791 S32: -0.5346 S33: 0.3189 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 525 THROUGH 534 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6646 -27.0575 -3.1197 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.2338 REMARK 3 T33: 0.1990 T12: -0.0036 REMARK 3 T13: 0.0159 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 5.3098 L22: 8.1120 REMARK 3 L33: 5.2583 L12: 0.6361 REMARK 3 L13: -1.3788 L23: 2.5545 REMARK 3 S TENSOR REMARK 3 S11: 0.0419 S12: 0.0180 S13: -0.0581 REMARK 3 S21: -0.1241 S22: -0.0976 S23: 0.0562 REMARK 3 S31: -0.0746 S32: -0.0935 S33: 0.0585 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 535 THROUGH 566 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6089 -25.0868 -2.8817 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.1709 REMARK 3 T33: 0.1470 T12: 0.0074 REMARK 3 T13: -0.0163 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.2683 L22: 2.5172 REMARK 3 L33: 2.4306 L12: 0.6477 REMARK 3 L13: 0.4920 L23: 0.3016 REMARK 3 S TENSOR REMARK 3 S11: 0.1033 S12: -0.3614 S13: 0.0280 REMARK 3 S21: 0.1485 S22: -0.1151 S23: 0.0810 REMARK 3 S31: 0.0446 S32: -0.0920 S33: 0.0011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 567 THROUGH 575 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7575 -27.9717 -2.6035 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.2280 REMARK 3 T33: 0.2946 T12: 0.0547 REMARK 3 T13: -0.0163 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 3.3686 L22: 4.6474 REMARK 3 L33: 7.0328 L12: 3.7525 REMARK 3 L13: -1.9458 L23: -2.2607 REMARK 3 S TENSOR REMARK 3 S11: -0.2648 S12: 0.2911 S13: -0.9145 REMARK 3 S21: -0.6640 S22: 0.0195 S23: -0.1880 REMARK 3 S31: 0.2953 S32: 0.1914 S33: 0.1367 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 576 THROUGH 587 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4713 -29.9882 5.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.3301 REMARK 3 T33: 0.3287 T12: -0.0612 REMARK 3 T13: -0.0136 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 8.5627 L22: 8.7355 REMARK 3 L33: 2.1232 L12: 1.2450 REMARK 3 L13: -1.9240 L23: 2.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.3195 S13: -1.0963 REMARK 3 S21: 0.3185 S22: -0.1276 S23: -0.4362 REMARK 3 S31: 0.5834 S32: -0.2651 S33: 0.2132 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 588 THROUGH 600 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1614 -19.0740 9.7743 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.3921 REMARK 3 T33: 0.1652 T12: -0.0049 REMARK 3 T13: -0.0603 T23: -0.0459 REMARK 3 L TENSOR REMARK 3 L11: 3.7295 L22: 4.9036 REMARK 3 L33: 5.5623 L12: 1.0200 REMARK 3 L13: -3.1889 L23: 1.0283 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.8390 S13: 0.1035 REMARK 3 S21: 0.5026 S22: -0.2169 S23: -0.0415 REMARK 3 S31: 0.0701 S32: -0.4332 S33: 0.1815 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 601 THROUGH 609 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3485 -12.8366 8.6593 REMARK 3 T TENSOR REMARK 3 T11: 0.4470 T22: 0.5152 REMARK 3 T33: 0.3155 T12: 0.1075 REMARK 3 T13: 0.0027 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 9.2879 L22: 3.4024 REMARK 3 L33: 3.4061 L12: -5.5835 REMARK 3 L13: 5.2960 L23: -3.3200 REMARK 3 S TENSOR REMARK 3 S11: -0.4011 S12: -0.6327 S13: 0.6265 REMARK 3 S21: -0.1350 S22: 0.4898 S23: 0.1979 REMARK 3 S31: -0.8158 S32: -0.2854 S33: -0.1012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292125697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45978 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 47.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 20.86 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3A1A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17 % PEG 8000, 0.2 M MAGNESIUMSULFAT, REMARK 280 0.1 M TRIS-HCL PH 7.5, VAPOR DIFFUSION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.18667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.37333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.28000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 115.46667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.09333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.18667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 92.37333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 115.46667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.28000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 23.09333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 706 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 471 REMARK 465 PRO A 472 REMARK 465 LEU A 473 REMARK 465 LYS A 577 REMARK 465 GLU A 578 REMARK 465 ALA A 610 REMARK 465 ASN A 611 REMARK 465 ASN A 612 REMARK 465 HIS A 613 REMARK 465 ASP A 614 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 491 O HOH A 801 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 544 -83.54 -125.71 REMARK 500 ASP A 600 32.72 -99.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 918 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 494 SG REMARK 620 2 CYS A 497 SG 112.9 REMARK 620 3 CYS A 514 SG 116.2 110.4 REMARK 620 4 CYS A 517 SG 106.9 105.7 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 704 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 537 SG REMARK 620 2 CYS A 540 SG 108.4 REMARK 620 3 CYS A 559 SG 113.4 111.5 REMARK 620 4 CYS A 562 SG 112.8 107.1 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 705 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 549 SG REMARK 620 2 CYS A 554 SG 109.1 REMARK 620 3 CYS A 583 SG 108.8 108.9 REMARK 620 4 CYS A 586 SG 107.4 104.9 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 706 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO A 701 O1 REMARK 620 2 EDO A 701 O2 79.2 REMARK 620 3 EDO A 701 O1 0.0 79.2 REMARK 620 4 EDO A 701 O2 79.2 0.0 79.2 REMARK 620 5 HOH A 836 O 167.2 88.0 167.2 88.0 REMARK 620 6 HOH A 836 O 87.3 166.4 87.3 166.4 105.4 REMARK 620 7 HOH A 864 O 87.7 91.0 87.7 91.0 91.3 90.4 REMARK 620 8 HOH A 864 O 90.2 86.8 90.2 86.8 90.4 91.3 177.2 REMARK 620 N 1 2 3 4 5 6 7 DBREF 8BA5 A 476 614 UNP Q9Y6K1 DNM3A_HUMAN 476 614 SEQADV 8BA5 GLY A 471 UNP Q9Y6K1 EXPRESSION TAG SEQADV 8BA5 PRO A 472 UNP Q9Y6K1 EXPRESSION TAG SEQADV 8BA5 LEU A 473 UNP Q9Y6K1 EXPRESSION TAG SEQADV 8BA5 GLY A 474 UNP Q9Y6K1 EXPRESSION TAG SEQADV 8BA5 SER A 475 UNP Q9Y6K1 EXPRESSION TAG SEQRES 1 A 144 GLY PRO LEU GLY SER ARG GLU ARG LEU VAL TYR GLU VAL SEQRES 2 A 144 ARG GLN LYS CYS ARG ASN ILE GLU ASP ILE CYS ILE SER SEQRES 3 A 144 CYS GLY SER LEU ASN VAL THR LEU GLU HIS PRO LEU PHE SEQRES 4 A 144 VAL GLY GLY MET CYS GLN ASN CYS LYS ASN CYS PHE LEU SEQRES 5 A 144 GLU CYS ALA TYR GLN TYR ASP ASP ASP GLY TYR GLN SER SEQRES 6 A 144 TYR CYS THR ILE CYS CYS GLY GLY ARG GLU VAL LEU MET SEQRES 7 A 144 CYS GLY ASN ASN ASN CYS CYS ARG CYS PHE CYS VAL GLU SEQRES 8 A 144 CYS VAL ASP LEU LEU VAL GLY PRO GLY ALA ALA GLN ALA SEQRES 9 A 144 ALA ILE LYS GLU ASP PRO TRP ASN CYS TYR MET CYS GLY SEQRES 10 A 144 HIS LYS GLY THR TYR GLY LEU LEU ARG ARG ARG GLU ASP SEQRES 11 A 144 TRP PRO SER ARG LEU GLN MET PHE PHE ALA ASN ASN HIS SEQRES 12 A 144 ASP HET EDO A 701 4 HET EDO A 702 4 HET ZN A 703 1 HET ZN A 704 1 HET ZN A 705 1 HET MG A 706 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 ZN 3(ZN 2+) FORMUL 7 MG MG 2+ FORMUL 8 HOH *118(H2 O) HELIX 1 AA1 GLY A 474 GLN A 485 1 12 HELIX 2 AA2 ASN A 489 ILE A 493 5 5 HELIX 3 AA3 GLN A 515 ALA A 525 1 11 HELIX 4 AA4 VAL A 560 VAL A 567 1 8 HELIX 5 AA5 GLY A 570 ILE A 576 1 7 HELIX 6 AA6 ASP A 600 PHE A 609 1 10 SHEET 1 AA1 2 VAL A 502 GLU A 505 0 SHEET 2 AA1 2 GLY A 512 CYS A 514 -1 O MET A 513 N THR A 503 SHEET 1 AA2 2 VAL A 546 MET A 548 0 SHEET 2 AA2 2 CYS A 557 CYS A 559 -1 O PHE A 558 N LEU A 547 SHEET 1 AA3 2 THR A 591 TYR A 592 0 SHEET 2 AA3 2 LEU A 595 ARG A 596 -1 O LEU A 595 N TYR A 592 LINK SG CYS A 494 ZN ZN A 703 1555 1555 2.29 LINK SG CYS A 497 ZN ZN A 703 1555 1555 2.33 LINK SG CYS A 514 ZN ZN A 703 1555 1555 2.32 LINK SG CYS A 517 ZN ZN A 703 1555 1555 2.33 LINK SG CYS A 537 ZN ZN A 704 1555 1555 2.37 LINK SG CYS A 540 ZN ZN A 704 1555 1555 2.31 LINK SG CYS A 549 ZN ZN A 705 1555 1555 2.34 LINK SG CYS A 554 ZN ZN A 705 1555 1555 2.34 LINK SG CYS A 559 ZN ZN A 704 1555 1555 2.29 LINK SG CYS A 562 ZN ZN A 704 1555 1555 2.30 LINK SG CYS A 583 ZN ZN A 705 1555 1555 2.31 LINK SG CYS A 586 ZN ZN A 705 1555 1555 2.24 LINK O1 EDO A 701 MG MG A 706 1555 1555 2.12 LINK O2 EDO A 701 MG MG A 706 1555 1555 2.13 LINK O1 EDO A 701 MG MG A 706 1555 10444 2.12 LINK O2 EDO A 701 MG MG A 706 1555 10444 2.13 LINK MG MG A 706 O HOH A 836 1555 1555 2.01 LINK MG MG A 706 O HOH A 836 1555 10444 2.01 LINK MG MG A 706 O HOH A 864 1555 1555 2.03 LINK MG MG A 706 O HOH A 864 1555 10444 2.03 CISPEP 1 ASP A 579 PRO A 580 0 -2.67 CRYST1 57.800 57.800 138.560 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017301 0.009989 0.000000 0.00000 SCALE2 0.000000 0.019978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007217 0.00000