HEADER HYDROLASE 14-OCT-22 8BBU TITLE CRYSTAL STRUCTURE OF MEDICAL LEECH DESTABILASE (HIGH SALT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 3 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 4 ORGANISM_TAXID: 6421; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCDNA3.4 TOPO KEYWDS LYSOZYME, MURAMIDASE, ISOPEPTIDASE, GLYCOSIDASE, ANTIBACTERIAL, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MARIN,S.BUKHDRUKER,V.MANUVERA,D.KORNILOV,E.ZINOVEV,P.BOBROVSKY, AUTHOR 2 V.LAZAREV,V.BORSHCHEVSKIY REVDAT 4 23-OCT-24 8BBU 1 REMARK REVDAT 3 21-FEB-24 8BBU 1 JRNL REVDAT 2 07-FEB-24 8BBU 1 REMARK REVDAT 1 08-FEB-23 8BBU 0 JRNL AUTH E.MARIN,D.A.KORNILOV,S.S.BUKHDRUKER,V.A.ALEKSENKO, JRNL AUTH 2 V.A.MANUVERA,E.V.ZINOVEV,K.V.KOVALEV,M.B.SHEVTSOV, JRNL AUTH 3 A.A.TALYZINA,P.A.BOBROVSKY,P.K.KUZMICHEV,A.V.MISHIN, JRNL AUTH 4 I.Y.GUSHCHIN,V.N.LAZAREV,V.I.BORSHCHEVSKIY JRNL TITL STRUCTURAL INSIGHTS INTO THROMBOLYTIC ACTIVITY OF JRNL TITL 2 DESTABILASE FROM MEDICINAL LEECH. JRNL REF SCI REP V. 13 6641 2023 JRNL REFN ESSN 2045-2322 JRNL PMID 37095116 JRNL DOI 10.1038/S41598-023-32459-X REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3855 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 82397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.420 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4300 - 2.6500 0.95 6073 150 0.1301 0.1579 REMARK 3 2 2.6500 - 2.1000 0.94 5944 144 0.1269 0.1373 REMARK 3 3 2.1000 - 1.8400 0.94 5937 152 0.1057 0.1676 REMARK 3 4 1.8400 - 1.6700 0.94 5991 143 0.1010 0.1171 REMARK 3 5 1.6700 - 1.5500 0.90 5746 147 0.0926 0.1266 REMARK 3 6 1.5500 - 1.4600 0.92 5786 158 0.0976 0.1286 REMARK 3 7 1.4600 - 1.3900 0.92 5826 143 0.1069 0.1571 REMARK 3 8 1.3900 - 1.3300 0.91 5808 156 0.1260 0.1967 REMARK 3 9 1.3300 - 1.2700 0.88 5588 121 0.1404 0.1545 REMARK 3 10 1.2700 - 1.2300 0.90 5749 130 0.1450 0.1681 REMARK 3 11 1.2300 - 1.1900 0.89 5574 146 0.1576 0.1943 REMARK 3 12 1.1900 - 1.1600 0.88 5565 136 0.1693 0.1784 REMARK 3 13 1.1600 - 1.1300 0.86 5515 145 0.1873 0.2318 REMARK 3 14 1.1300 - 1.1000 0.85 5304 120 0.2099 0.2363 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.079 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.847 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2128 REMARK 3 ANGLE : 1.167 2878 REMARK 3 CHIRALITY : 0.092 281 REMARK 3 PLANARITY : 0.008 392 REMARK 3 DIHEDRAL : 14.222 803 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292126087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20161205 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20191015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 34.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 2DQA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.9 M SODIUM MALONATE, 6.4 MM NNN REMARK 280 -TRIACETYLCHITOTRIOSE, PH 5.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 144 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 NH1 NH2 REMARK 470 LYS A 32 CD CE NZ REMARK 470 LYS A 91 CE NZ REMARK 470 ARG A 117 CZ NH1 NH2 REMARK 470 LYS A 120 CE NZ REMARK 470 LYS A 130 CE NZ REMARK 470 HIS A 143 CA C O CB CG ND1 CD2 REMARK 470 HIS A 143 CE1 NE2 REMARK 470 LYS B 32 CD CE NZ REMARK 470 LYS B 130 NZ REMARK 470 HIS B 139 C O CB CG ND1 CD2 CE1 REMARK 470 HIS B 139 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 36 -132.89 62.16 REMARK 500 CYS B 36 -129.76 58.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 804 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B 753 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 35 O REMARK 620 2 HOH A 614 O 91.1 REMARK 620 3 HOH A 627 O 98.2 106.6 REMARK 620 4 HOH A 732 O 83.3 111.2 142.1 REMARK 620 5 HOH A 762 O 96.3 167.0 61.8 80.4 REMARK 620 6 HOH A 799 O 170.7 82.5 90.1 92.7 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 655 O REMARK 620 2 HOH A 657 O 81.2 REMARK 620 3 HOH A 675 O 84.1 165.1 REMARK 620 4 HOH A 694 O 87.2 79.1 97.3 REMARK 620 5 HOH A 719 O 83.4 96.9 84.3 170.3 REMARK 620 6 HOH A 747 O 175.5 99.0 95.4 88.4 101.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 603 O REMARK 620 2 HOH B 607 O 75.4 REMARK 620 3 HOH B 616 O 99.5 153.0 REMARK 620 4 HOH B 675 O 88.8 74.6 78.9 REMARK 620 5 HOH B 684 O 165.5 92.2 88.3 80.7 REMARK 620 6 HOH B 707 O 99.8 102.6 104.4 170.1 90.0 REMARK 620 N 1 2 3 4 5 DBREF 8BBU A 21 136 UNP Q25091 Q25091_HIRME 21 136 DBREF 8BBU B 21 136 UNP Q25091 Q25091_HIRME 21 136 SEQADV 8BBU GLY A 137 UNP Q25091 EXPRESSION TAG SEQADV 8BBU THR A 138 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS A 139 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS A 140 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS A 141 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS A 142 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS A 143 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS A 144 UNP Q25091 EXPRESSION TAG SEQADV 8BBU GLY B 137 UNP Q25091 EXPRESSION TAG SEQADV 8BBU THR B 138 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS B 139 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS B 140 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS B 141 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS B 142 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS B 143 UNP Q25091 EXPRESSION TAG SEQADV 8BBU HIS B 144 UNP Q25091 EXPRESSION TAG SEQRES 1 A 124 PCA PHE THR ASP SER CYS LEU ARG CYS ILE CYS LYS VAL SEQRES 2 A 124 GLU GLY CYS ASP SER GLN ILE GLY LYS CYS GLY MET ASP SEQRES 3 A 124 VAL GLY SER LEU SER CYS GLY PRO TYR GLN ILE LYS LYS SEQRES 4 A 124 PRO TYR TRP ILE ASP CYS GLY LYS PRO GLY GLY GLY TYR SEQRES 5 A 124 GLU SER CYS THR LYS ASN LYS ALA CYS SER GLU THR CYS SEQRES 6 A 124 VAL ARG ALA TYR MET LYS ARG TYR GLY THR PHE CYS THR SEQRES 7 A 124 GLY GLY ARG THR PRO THR CYS GLN ASP TYR ALA ARG ILE SEQRES 8 A 124 HIS ASN GLY GLY PRO ARG GLY CYS LYS SER SER ALA THR SEQRES 9 A 124 VAL GLY TYR TRP ASN LYS VAL GLN LYS CYS LEU ARG GLY SEQRES 10 A 124 THR HIS HIS HIS HIS HIS HIS SEQRES 1 B 124 PCA PHE THR ASP SER CYS LEU ARG CYS ILE CYS LYS VAL SEQRES 2 B 124 GLU GLY CYS ASP SER GLN ILE GLY LYS CYS GLY MET ASP SEQRES 3 B 124 VAL GLY SER LEU SER CYS GLY PRO TYR GLN ILE LYS LYS SEQRES 4 B 124 PRO TYR TRP ILE ASP CYS GLY LYS PRO GLY GLY GLY TYR SEQRES 5 B 124 GLU SER CYS THR LYS ASN LYS ALA CYS SER GLU THR CYS SEQRES 6 B 124 VAL ARG ALA TYR MET LYS ARG TYR GLY THR PHE CYS THR SEQRES 7 B 124 GLY GLY ARG THR PRO THR CYS GLN ASP TYR ALA ARG ILE SEQRES 8 B 124 HIS ASN GLY GLY PRO ARG GLY CYS LYS SER SER ALA THR SEQRES 9 B 124 VAL GLY TYR TRP ASN LYS VAL GLN LYS CYS LEU ARG GLY SEQRES 10 B 124 THR HIS HIS HIS HIS HIS HIS MODRES 8BBU PCA A 21 GLN MODIFIED RESIDUE MODRES 8BBU PCA B 21 GLN MODIFIED RESIDUE HET PCA A 21 8 HET PCA B 21 16 HET NA A 501 1 HET NA A 502 1 HET MLI A 503 7 HET MLI A 504 7 HET MLI A 505 7 HET MLI A 506 14 HET GOL A 507 6 HET GOL A 508 6 HET MLI A 509 7 HET NA B 501 1 HET MLI B 502 7 HET MLI B 503 7 HETNAM PCA PYROGLUTAMIC ACID HETNAM NA SODIUM ION HETNAM MLI MALONATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 3 NA 3(NA 1+) FORMUL 5 MLI 7(C3 H2 O4 2-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 15 HOH *357(H2 O) HELIX 1 AA1 THR A 23 GLY A 35 1 13 HELIX 2 AA2 CYS A 36 ILE A 40 5 5 HELIX 3 AA3 LYS A 59 CYS A 65 1 7 HELIX 4 AA4 GLY A 71 LYS A 77 1 7 HELIX 5 AA5 ASN A 78 GLY A 99 1 22 HELIX 6 AA6 THR A 104 GLY A 115 1 12 HELIX 7 AA7 SER A 121 ALA A 123 5 3 HELIX 8 AA8 THR A 124 GLY A 137 1 14 HELIX 9 AA9 THR B 23 GLY B 35 1 13 HELIX 10 AB1 CYS B 36 ILE B 40 5 5 HELIX 11 AB2 LYS B 59 CYS B 65 1 7 HELIX 12 AB3 GLY B 71 LYS B 77 1 7 HELIX 13 AB4 ASN B 78 GLY B 99 1 22 HELIX 14 AB5 THR B 104 GLY B 115 1 12 HELIX 15 AB6 ARG B 117 ALA B 123 5 7 HELIX 16 AB7 THR B 124 GLY B 137 1 14 SHEET 1 AA1 3 CYS A 43 ASP A 46 0 SHEET 2 AA1 3 SER A 49 CYS A 52 -1 O SER A 51 N GLY A 44 SHEET 3 AA1 3 ILE A 57 LYS A 58 -1 O ILE A 57 N CYS A 52 SHEET 1 AA2 3 CYS B 43 ASP B 46 0 SHEET 2 AA2 3 SER B 49 CYS B 52 -1 O SER B 49 N ASP B 46 SHEET 3 AA2 3 ILE B 57 LYS B 58 -1 O ILE B 57 N CYS B 52 SSBOND 1 CYS A 26 CYS A 105 1555 1555 2.02 SSBOND 2 CYS A 29 CYS A 134 1555 1555 2.04 SSBOND 3 CYS A 31 CYS A 36 1555 1555 2.03 SSBOND 4 CYS A 43 CYS A 52 1555 1555 2.04 SSBOND 5 CYS A 65 CYS A 85 1555 1555 2.05 SSBOND 6 CYS A 75 CYS A 81 1555 1555 2.05 SSBOND 7 CYS A 97 CYS A 119 1555 1555 2.06 SSBOND 8 CYS B 26 CYS B 105 1555 1555 2.03 SSBOND 9 CYS B 29 CYS B 134 1555 1555 2.04 SSBOND 10 CYS B 31 CYS B 36 1555 1555 2.03 SSBOND 11 CYS B 43 CYS B 52 1555 1555 2.05 SSBOND 12 CYS B 65 CYS B 85 1555 1555 2.04 SSBOND 13 CYS B 75 CYS B 81 1555 1555 2.06 SSBOND 14 CYS B 97 CYS B 119 1555 1555 2.07 LINK C PCA A 21 N PHE A 22 1555 1555 1.34 LINK C APCA B 21 N PHE B 22 1555 1555 1.33 LINK C BPCA B 21 N PHE B 22 1555 1555 1.33 LINK O GLY A 35 NA NA A 502 1555 1555 2.30 LINK NA A NA A 501 O HOH A 655 1555 1555 2.40 LINK NA A NA A 501 O HOH A 657 1555 1555 2.48 LINK NA A NA A 501 O AHOH A 675 1555 1555 2.44 LINK NA A NA A 501 O HOH A 694 1555 1555 2.45 LINK NA A NA A 501 O HOH A 719 1555 1555 2.50 LINK NA A NA A 501 O HOH A 747 1555 1555 2.33 LINK NA NA A 502 O HOH A 614 1555 1555 2.33 LINK NA NA A 502 O HOH A 627 1555 1555 2.54 LINK NA NA A 502 O HOH A 732 1555 1555 2.29 LINK NA NA A 502 O HOH A 762 1555 1555 2.36 LINK NA NA A 502 O HOH A 799 1555 1555 2.47 LINK NA B NA B 501 O BHOH B 603 1555 1555 2.46 LINK NA B NA B 501 O BHOH B 607 1555 1555 2.45 LINK NA B NA B 501 O BHOH B 616 1555 1555 2.32 LINK NA B NA B 501 O BHOH B 675 1555 1555 2.44 LINK NA B NA B 501 O BHOH B 684 1555 1555 2.52 LINK NA B NA B 501 O BHOH B 707 1555 1555 2.37 CRYST1 27.440 36.170 61.390 106.81 92.58 95.49 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036443 0.003503 0.002802 0.00000 SCALE2 0.000000 0.027775 0.008580 0.00000 SCALE3 0.000000 0.000000 0.017066 0.00000 HETATM 1 N PCA A 21 -13.762 24.797 -14.852 1.00 9.74 N ANISOU 1 N PCA A 21 1208 1308 1186 -81 406 -230 N HETATM 2 CA PCA A 21 -14.210 23.987 -15.999 1.00 9.17 C ANISOU 2 CA PCA A 21 966 1427 1091 -228 202 -137 C HETATM 3 CB PCA A 21 -15.533 24.591 -16.441 1.00 11.65 C ANISOU 3 CB PCA A 21 989 2018 1421 68 180 -187 C HETATM 4 CG PCA A 21 -15.492 26.042 -16.006 1.00 13.78 C ANISOU 4 CG PCA A 21 1419 2206 1610 437 38 -167 C HETATM 5 CD PCA A 21 -14.494 26.022 -14.898 1.00 12.78 C ANISOU 5 CD PCA A 21 1431 1906 1520 -84 233 -346 C HETATM 6 OE PCA A 21 -14.323 26.917 -14.083 1.00 15.33 O ANISOU 6 OE PCA A 21 2190 1762 1872 -99 299 -555 O HETATM 7 C PCA A 21 -13.235 24.084 -17.170 1.00 7.80 C ANISOU 7 C PCA A 21 843 983 1139 -119 43 -30 C HETATM 8 O PCA A 21 -12.560 25.099 -17.337 1.00 8.39 O ANISOU 8 O PCA A 21 1016 1058 1113 -50 206 -121 O