HEADER TOXIN 22-OCT-22 8BEZ TITLE STRUCTURE OF THE LYSINIBACILLUS SPHAERICUS TPP49AA1 PESTICIDAL PROTEIN TITLE 2 AT PH 11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRY49AA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CRYSTAL TOXIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYSINIBACILLUS SPHAERICUS; SOURCE 3 ORGANISM_TAXID: 1421; SOURCE 4 GENE: CRY49AA1, CRY49AA; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS THURINGIENSIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1428 KEYWDS LYSINIBACILLUS SPHAERICUS, BACILLUS THURINGIENSIS, TPP49AA1, KEYWDS 2 CRY48AA1, XFEL, SFX, MOSQUITOES, CULEX QUINQUEFASCIATUS, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR L.J.WILLIAMSON,P.J.RIZKALLAH,C.BERRY,D.OBERTHUR,M.GALCHENKOVA, AUTHOR 2 O.YEFANOV,R.BEAN REVDAT 3 13-NOV-24 8BEZ 1 REMARK REVDAT 2 06-DEC-23 8BEZ 1 JRNL REVDAT 1 01-NOV-23 8BEZ 0 JRNL AUTH L.J.WILLIAMSON,M.GALCHENKOVA,H.L.BEST,R.J.BEAN,A.MUNKE, JRNL AUTH 2 S.AWEL,G.PENA,J.KNOSKA,R.SCHUBERT,K.DORNER,H.W.PARK, JRNL AUTH 3 D.K.BIDESHI,A.HENKEL,V.KREMLING,B.KLOPPROGGE,E.LLOYD-EVANS, JRNL AUTH 4 M.T.YOUNG,J.VALERIO,M.KLOOS,M.SIKORSKI,G.MILLS,J.BIELECKI, JRNL AUTH 5 H.KIRKWOOD,C.KIM,R.DE WIJN,K.LORENZEN,P.L.XAVIER, JRNL AUTH 6 A.RAHMANI MASHHOUR,L.GELISIO,O.YEFANOV,A.P.MANCUSO, JRNL AUTH 7 B.A.FEDERICI,H.N.CHAPMAN,N.CRICKMORE,P.J.RIZKALLAH,C.BERRY, JRNL AUTH 8 D.OBERTHUR JRNL TITL STRUCTURE OF THE LYSINIBACILLUS SPHAERICUS TPP49AA1 JRNL TITL 2 PESTICIDAL PROTEIN ELUCIDATED FROM NATURAL CRYSTALS USING JRNL TITL 3 MHZ-SFX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 41120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 38015839 JRNL DOI 10.1073/PNAS.2203241120 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 100468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5313 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7109 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 377 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.244 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7033 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6491 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9593 ; 1.443 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14863 ; 1.294 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 864 ; 7.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 456 ;35.050 ;22.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1155 ;12.575 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 63 ;15.725 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 926 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8281 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1829 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 49 464 B 49 464 13880 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0304 -24.1250 -42.2897 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.1196 REMARK 3 T33: 0.0775 T12: 0.0374 REMARK 3 T13: -0.0423 T23: -0.0921 REMARK 3 L TENSOR REMARK 3 L11: 2.1486 L22: 2.4667 REMARK 3 L33: 3.6174 L12: -0.4089 REMARK 3 L13: 0.0457 L23: 0.8886 REMARK 3 S TENSOR REMARK 3 S11: 0.1013 S12: 0.4212 S13: -0.3534 REMARK 3 S21: -0.2144 S22: -0.1765 S23: 0.2153 REMARK 3 S31: 0.2177 S32: -0.1603 S33: 0.0752 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 463 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9604 1.8662 -6.7937 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: 0.0602 REMARK 3 T33: 0.0194 T12: -0.0408 REMARK 3 T13: -0.0087 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.5820 L22: 1.3881 REMARK 3 L33: 3.2046 L12: 0.1123 REMARK 3 L13: 0.2259 L23: 1.4499 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: -0.0836 S13: 0.0728 REMARK 3 S21: -0.0116 S22: -0.0207 S23: -0.0805 REMARK 3 S31: -0.2416 S32: 0.2463 S33: 0.0100 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 49 B 214 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9392 -32.1871 2.8873 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.0535 REMARK 3 T33: 0.0580 T12: 0.0560 REMARK 3 T13: 0.0857 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 2.7803 L22: 2.0372 REMARK 3 L33: 3.6011 L12: -0.0745 REMARK 3 L13: -1.4030 L23: -0.6485 REMARK 3 S TENSOR REMARK 3 S11: -0.1060 S12: -0.1613 S13: -0.2150 REMARK 3 S21: 0.4478 S22: 0.0875 S23: 0.2759 REMARK 3 S31: -0.1222 S32: -0.2076 S33: 0.0185 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 215 B 463 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7773 -24.7579 -32.2191 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.0429 REMARK 3 T33: 0.0213 T12: -0.0527 REMARK 3 T13: -0.0089 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.6025 L22: 0.5459 REMARK 3 L33: 3.1065 L12: 0.2238 REMARK 3 L13: -1.5393 L23: -0.4846 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: 0.0377 S13: 0.0778 REMARK 3 S21: -0.0370 S22: -0.0136 S23: -0.0757 REMARK 3 S31: -0.2787 S32: 0.2173 S33: 0.0287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8BEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292124987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 11 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : SPB/SFX REMARK 200 X-RAY GENERATOR MODEL : EUROPEAN XFEL BEAMLINE SPB/SFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.33 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : AGIPD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL AMBIGATOR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105904 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 36.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 323.7 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 3WA1, 5FOY, 5G37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATURAL, PH 11, IN CELL, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.06000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.24500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.24500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 436 O HOH B 501 1.84 REMARK 500 OD1 ASN B 69 O HOH B 502 2.01 REMARK 500 OD1 ASN B 357 O HOH B 503 2.03 REMARK 500 OD1 ASN A 357 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 504 O HOH B 731 3554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 60.30 -103.59 REMARK 500 ASN A 69 -5.37 -144.54 REMARK 500 ASN A 76 46.48 -108.70 REMARK 500 ASN A 122 3.73 80.65 REMARK 500 GLN A 152 -61.63 -96.85 REMARK 500 SER A 275 61.55 -154.16 REMARK 500 ASN B 51 55.68 -98.71 REMARK 500 ASN B 69 -3.64 -146.00 REMARK 500 ASN B 122 2.45 82.14 REMARK 500 GLN B 152 -62.23 -96.78 REMARK 500 SER B 275 60.71 -153.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QA1 RELATED DB: PDB REMARK 900 LOWER RESOLUTION DBREF 8BEZ A 49 464 UNP A7WK53 A7WK53_LYSSH 49 464 DBREF 8BEZ B 49 464 UNP A7WK53 A7WK53_LYSSH 49 464 SEQRES 1 A 416 ASN LEU ASN LEU PRO GLU GLN SER THR ARG PHE GLN THR SEQRES 2 A 416 ILE ALA SER ILE HIS SER ASN ASN CYS SER PHE GLU ILE SEQRES 3 A 416 LEU ASN ASN ASP PRO GLY TYR ILE TYR GLY ASP SER VAL SEQRES 4 A 416 ASP GLY GLU CYS ARG ILE ALA VAL ALA HIS ARG GLU LEU SEQRES 5 A 416 GLY ASN GLY LEU GLU ARG THR GLY ASP ASP ARG PHE LEU SEQRES 6 A 416 PHE ILE PHE TYR ALA LEU ASP ASN ASN ASN PHE ILE ILE SEQRES 7 A 416 ALA ASN ARG HIS ASP GLY PHE VAL LEU GLN PHE LEU ILE SEQRES 8 A 416 ALA ASN GLY GLN GLY VAL ILE VAL SER ARG GLU TYR GLN SEQRES 9 A 416 PRO ASN ILE HIS GLN GLU PHE THR ILE GLN SER ILE ASN SEQRES 10 A 416 SER ASP THR PHE ARG LEU HIS SER ARG ASP THR ASN THR SEQRES 11 A 416 PHE ALA THR VAL CYS TRP ALA GLN PHE ASN SER TRP THR SEQRES 12 A 416 LYS ILE VAL SER ARG VAL ASP ASN PRO GLY ALA PRO ASN SEQRES 13 A 416 ALA ASN LEU LYS HIS ARG SER LEU LEU THR ASP ILE ASN SEQRES 14 A 416 MET PRO GLN LEU PRO SER LEU THR PRO LEU GLN PRO LEU SEQRES 15 A 416 PRO ARG LEU THR GLU LEU GLU ASP GLY GLY LEU SER PRO SEQRES 16 A 416 ALA GLN ALA PRO ARG ALA ILE ILE GLY ARG THR LEU ILE SEQRES 17 A 416 PRO CYS LEU PHE VAL ASN ASP PRO VAL LEU ARG LEU GLU SEQRES 18 A 416 ASN ARG ILE LYS GLN SER PRO TYR TYR VAL LEU GLU HIS SEQRES 19 A 416 ARG GLN TYR TRP HIS ARG ILE TRP THR ASP ILE PHE THR SEQRES 20 A 416 ALA GLY GLU ARG ARG GLU TYR ARG GLU VAL THR GLY ILE SEQRES 21 A 416 ASN ASN ASN ALA GLN ASN ASP MET ASN LYS MET ILE ASN SEQRES 22 A 416 ILE THR ILE GLY ALA ASP GLY PRO ASN ARG LEU ARG PHE SEQRES 23 A 416 GLY ASN LEU SER THR PRO PHE ARG GLN GLN ILE ILE ASP SEQRES 24 A 416 ASN SER ASN THR LEU GLY SER PHE ALA ASN THR ASN TYR SEQRES 25 A 416 GLY THR ARG THR ASP ILE VAL ASN VAL PHE ASN SER GLU SEQRES 26 A 416 PHE HIS GLN VAL ARG TYR ALA ARG PHE VAL LYS ALA TYR SEQRES 27 A 416 GLU TYR ARG LEU THR ARG ALA ASP GLY SER GLN VAL GLY SEQRES 28 A 416 THR PRO TRP VAL VAL LEU ASP ARG LYS GLU MET ASP LEU SEQRES 29 A 416 ARG THR TYR PRO HIS ASN MET ALA ILE THR LEU GLU ASN SEQRES 30 A 416 VAL LYS ILE ASP ASN ALA ASP ASN SER TYR ASP LEU SER SEQRES 31 A 416 ILE TRP LYS THR PRO LEU LYS LEU LYS ASP GLY LYS ILE SEQRES 32 A 416 ILE ILE GLU ASN HIS GLU ASN SER LYS PRO TYR TYR ASN SEQRES 1 B 416 ASN LEU ASN LEU PRO GLU GLN SER THR ARG PHE GLN THR SEQRES 2 B 416 ILE ALA SER ILE HIS SER ASN ASN CYS SER PHE GLU ILE SEQRES 3 B 416 LEU ASN ASN ASP PRO GLY TYR ILE TYR GLY ASP SER VAL SEQRES 4 B 416 ASP GLY GLU CYS ARG ILE ALA VAL ALA HIS ARG GLU LEU SEQRES 5 B 416 GLY ASN GLY LEU GLU ARG THR GLY ASP ASP ARG PHE LEU SEQRES 6 B 416 PHE ILE PHE TYR ALA LEU ASP ASN ASN ASN PHE ILE ILE SEQRES 7 B 416 ALA ASN ARG HIS ASP GLY PHE VAL LEU GLN PHE LEU ILE SEQRES 8 B 416 ALA ASN GLY GLN GLY VAL ILE VAL SER ARG GLU TYR GLN SEQRES 9 B 416 PRO ASN ILE HIS GLN GLU PHE THR ILE GLN SER ILE ASN SEQRES 10 B 416 SER ASP THR PHE ARG LEU HIS SER ARG ASP THR ASN THR SEQRES 11 B 416 PHE ALA THR VAL CYS TRP ALA GLN PHE ASN SER TRP THR SEQRES 12 B 416 LYS ILE VAL SER ARG VAL ASP ASN PRO GLY ALA PRO ASN SEQRES 13 B 416 ALA ASN LEU LYS HIS ARG SER LEU LEU THR ASP ILE ASN SEQRES 14 B 416 MET PRO GLN LEU PRO SER LEU THR PRO LEU GLN PRO LEU SEQRES 15 B 416 PRO ARG LEU THR GLU LEU GLU ASP GLY GLY LEU SER PRO SEQRES 16 B 416 ALA GLN ALA PRO ARG ALA ILE ILE GLY ARG THR LEU ILE SEQRES 17 B 416 PRO CYS LEU PHE VAL ASN ASP PRO VAL LEU ARG LEU GLU SEQRES 18 B 416 ASN ARG ILE LYS GLN SER PRO TYR TYR VAL LEU GLU HIS SEQRES 19 B 416 ARG GLN TYR TRP HIS ARG ILE TRP THR ASP ILE PHE THR SEQRES 20 B 416 ALA GLY GLU ARG ARG GLU TYR ARG GLU VAL THR GLY ILE SEQRES 21 B 416 ASN ASN ASN ALA GLN ASN ASP MET ASN LYS MET ILE ASN SEQRES 22 B 416 ILE THR ILE GLY ALA ASP GLY PRO ASN ARG LEU ARG PHE SEQRES 23 B 416 GLY ASN LEU SER THR PRO PHE ARG GLN GLN ILE ILE ASP SEQRES 24 B 416 ASN SER ASN THR LEU GLY SER PHE ALA ASN THR ASN TYR SEQRES 25 B 416 GLY THR ARG THR ASP ILE VAL ASN VAL PHE ASN SER GLU SEQRES 26 B 416 PHE HIS GLN VAL ARG TYR ALA ARG PHE VAL LYS ALA TYR SEQRES 27 B 416 GLU TYR ARG LEU THR ARG ALA ASP GLY SER GLN VAL GLY SEQRES 28 B 416 THR PRO TRP VAL VAL LEU ASP ARG LYS GLU MET ASP LEU SEQRES 29 B 416 ARG THR TYR PRO HIS ASN MET ALA ILE THR LEU GLU ASN SEQRES 30 B 416 VAL LYS ILE ASP ASN ALA ASP ASN SER TYR ASP LEU SER SEQRES 31 B 416 ILE TRP LYS THR PRO LEU LYS LEU LYS ASP GLY LYS ILE SEQRES 32 B 416 ILE ILE GLU ASN HIS GLU ASN SER LYS PRO TYR TYR ASN FORMUL 3 HOH *470(H2 O) HELIX 1 AA1 PRO A 53 THR A 57 5 5 HELIX 2 AA2 ASP A 109 PHE A 112 5 4 HELIX 3 AA3 ASN A 154 GLU A 158 5 5 HELIX 4 AA4 TRP A 184 GLN A 186 5 3 HELIX 5 AA5 LEU A 259 VAL A 261 5 3 HELIX 6 AA6 ARG A 267 SER A 275 1 9 HELIX 7 AA7 ASN A 309 ASN A 321 1 13 HELIX 8 AA8 SER A 338 PRO A 340 5 3 HELIX 9 AA9 PHE A 341 ASN A 350 1 10 HELIX 10 AB1 PRO B 53 THR B 57 5 5 HELIX 11 AB2 ASP B 109 PHE B 112 5 4 HELIX 12 AB3 ASN B 154 GLU B 158 5 5 HELIX 13 AB4 TRP B 184 GLN B 186 5 3 HELIX 14 AB5 LEU B 259 VAL B 261 5 3 HELIX 15 AB6 ARG B 267 SER B 275 1 9 HELIX 16 AB7 ASN B 309 ASN B 321 1 13 HELIX 17 AB8 SER B 338 PRO B 340 5 3 HELIX 18 AB9 PHE B 341 ASN B 350 1 10 SHEET 1 AA1 2 PHE A 59 GLN A 60 0 SHEET 2 AA1 2 LEU A 212 LEU A 213 -1 O LEU A 213 N PHE A 59 SHEET 1 AA2 2 ALA A 63 SER A 64 0 SHEET 2 AA2 2 LEU A 207 LYS A 208 -1 O LYS A 208 N ALA A 63 SHEET 1 AA3 2 CYS A 70 ILE A 74 0 SHEET 2 AA3 2 LEU A 100 LEU A 104 -1 O GLY A 103 N SER A 71 SHEET 1 AA4 2 PHE A 114 ALA A 118 0 SHEET 2 AA4 2 PHE A 124 ASN A 128 -1 O ILE A 125 N TYR A 117 SHEET 1 AA5 2 VAL A 134 ALA A 140 0 SHEET 2 AA5 2 GLN A 143 ARG A 149 -1 O ARG A 149 N VAL A 134 SHEET 1 AA6 4 THR A 160 ASN A 165 0 SHEET 2 AA6 4 THR A 168 SER A 173 -1 O HIS A 172 N THR A 160 SHEET 3 AA6 4 THR A 178 VAL A 182 -1 O THR A 178 N SER A 173 SHEET 4 AA6 4 ILE A 193 ARG A 196 -1 O VAL A 194 N THR A 181 SHEET 1 AA7 5 ALA A 249 PRO A 257 0 SHEET 2 AA7 5 TYR A 277 PHE A 294 -1 O GLN A 284 N ALA A 249 SHEET 3 AA7 5 VAL A 377 THR A 391 -1 O ALA A 385 N TYR A 285 SHEET 4 AA7 5 TRP A 402 TYR A 415 -1 O ASP A 406 N LYS A 384 SHEET 5 AA7 5 ILE A 452 ILE A 453 -1 O ILE A 452 N MET A 410 SHEET 1 AA8 4 ARG A 299 GLY A 307 0 SHEET 2 AA8 4 THR A 362 PHE A 370 -1 O ASP A 365 N GLU A 304 SHEET 3 AA8 4 ALA A 420 ALA A 431 -1 O LYS A 427 N ILE A 366 SHEET 4 AA8 4 LEU A 444 LYS A 447 -1 O LEU A 444 N LEU A 423 SHEET 1 AA9 3 ILE A 322 ILE A 324 0 SHEET 2 AA9 3 ARG A 331 PHE A 334 -1 O ARG A 333 N THR A 323 SHEET 3 AA9 3 LEU A 352 GLY A 353 1 O LEU A 352 N LEU A 332 SHEET 1 AB1 2 SER A 438 TRP A 440 0 SHEET 2 AB1 2 SER A 459 PRO A 461 -1 O LYS A 460 N ILE A 439 SHEET 1 AB2 2 PHE B 59 GLN B 60 0 SHEET 2 AB2 2 LEU B 212 LEU B 213 -1 O LEU B 213 N PHE B 59 SHEET 1 AB3 2 ALA B 63 SER B 64 0 SHEET 2 AB3 2 LEU B 207 LYS B 208 -1 O LYS B 208 N ALA B 63 SHEET 1 AB4 2 CYS B 70 ILE B 74 0 SHEET 2 AB4 2 LEU B 100 LEU B 104 -1 O GLY B 103 N SER B 71 SHEET 1 AB5 2 PHE B 114 ALA B 118 0 SHEET 2 AB5 2 PHE B 124 ASN B 128 -1 O ILE B 125 N TYR B 117 SHEET 1 AB6 2 VAL B 134 ALA B 140 0 SHEET 2 AB6 2 GLN B 143 ARG B 149 -1 O ARG B 149 N VAL B 134 SHEET 1 AB7 4 THR B 160 ASN B 165 0 SHEET 2 AB7 4 THR B 168 SER B 173 -1 O HIS B 172 N THR B 160 SHEET 3 AB7 4 THR B 178 VAL B 182 -1 O THR B 178 N SER B 173 SHEET 4 AB7 4 ILE B 193 ARG B 196 -1 O VAL B 194 N THR B 181 SHEET 1 AB8 5 ALA B 249 PRO B 257 0 SHEET 2 AB8 5 TYR B 277 PHE B 294 -1 O GLN B 284 N ALA B 249 SHEET 3 AB8 5 VAL B 377 THR B 391 -1 O ALA B 385 N TYR B 285 SHEET 4 AB8 5 TRP B 402 TYR B 415 -1 O ASP B 406 N LYS B 384 SHEET 5 AB8 5 ILE B 452 ILE B 453 -1 O ILE B 452 N MET B 410 SHEET 1 AB9 4 ARG B 299 GLY B 307 0 SHEET 2 AB9 4 THR B 362 PHE B 370 -1 O ASP B 365 N GLU B 304 SHEET 3 AB9 4 ALA B 420 ALA B 431 -1 O LYS B 427 N ILE B 366 SHEET 4 AB9 4 LEU B 444 LYS B 447 -1 O LEU B 444 N LEU B 423 SHEET 1 AC1 3 ILE B 322 ILE B 324 0 SHEET 2 AC1 3 ARG B 331 PHE B 334 -1 O ARG B 333 N THR B 323 SHEET 3 AC1 3 LEU B 352 GLY B 353 1 O LEU B 352 N LEU B 332 SHEET 1 AC2 2 SER B 438 TRP B 440 0 SHEET 2 AC2 2 SER B 459 PRO B 461 -1 O LYS B 460 N ILE B 439 SSBOND 1 CYS A 91 CYS A 183 1555 1555 2.06 SSBOND 2 CYS B 91 CYS B 183 1555 1555 2.06 CISPEP 1 GLN A 152 PRO A 153 0 -6.09 CISPEP 2 TYR A 415 PRO A 416 0 -2.53 CISPEP 3 THR A 442 PRO A 443 0 -1.74 CISPEP 4 GLN B 152 PRO B 153 0 -5.40 CISPEP 5 TYR B 415 PRO B 416 0 -3.02 CISPEP 6 THR B 442 PRO B 443 0 -1.16 CRYST1 80.120 83.220 156.490 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006390 0.00000