data_8BFD # _entry.id 8BFD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8BFD pdb_00008bfd 10.2210/pdb8bfd/pdb WWPDB D_1292125751 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8BFD _pdbx_database_status.recvd_initial_deposition_date 2022-10-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kumar, P.' 1 0000-0002-2008-3347 'Paterson, N.G.' 2 0000-0003-4292-6971 'Woolfson, D.N.' 3 0000-0002-0394-3202 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 607 _citation.language ? _citation.page_first 387 _citation.page_last 392 _citation.title 'De novo design of discrete, stable 3 10 -helix peptide assemblies.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-022-04868-x _citation.pdbx_database_id_PubMed 35732733 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, P.' 1 0000-0002-2008-3347 primary 'Paterson, N.G.' 2 0000-0003-4292-6971 primary 'Clayden, J.' 3 0000-0001-5080-9535 primary 'Woolfson, D.N.' 4 0000-0002-0394-3202 # _cell.angle_alpha 105.850 _cell.angle_alpha_esd ? _cell.angle_beta 112.440 _cell.angle_beta_esd ? _cell.angle_gamma 95.260 _cell.angle_gamma_esd ? _cell.entry_id 8BFD _cell.details ? _cell.formula_units_Z ? _cell.length_a 21.230 _cell.length_a_esd ? _cell.length_b 21.905 _cell.length_b_esd ? _cell.length_c 26.521 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8BFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 310HD-U2U5 3121.721 1 ? ? ? ? 2 polymer syn D-310HD-U2U5 3116.685 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 water nat water 18.015 34 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(ACE)GE(AIB)(AIB)(AIB)(AIB)KE(AIB)(AIB)(AIB)(AIB)KE(AIB)(AIB)(AIB)(AIB)KE(AIB) (AIB)(AIB)(AIB)K(AIB)(AIB)(AIB)WKG(NH2) ; XGEAAAAKEAAAAKEAAAAKEAAAAKAAAWKGX A ? 2 'polypeptide(D)' no yes ;(ACE)G(DGL)(AIB)(AIB)(AIB)(AIB)(DLY)(DGL)(AIB)(AIB)(AIB)(AIB)(DLY)(DGL)(AIB) (AIB)(AIB)(AIB)(DLY)(DGL)(AIB)(AIB)(AIB)(AIB)(DLY)(AIB)(AIB)(AIB)(DTR)(DLY)G (NH2) ; XGEAAAAKEAAAAKEAAAAKEAAAAKAAAWKGX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 GLU n 1 4 AIB n 1 5 AIB n 1 6 AIB n 1 7 AIB n 1 8 LYS n 1 9 GLU n 1 10 AIB n 1 11 AIB n 1 12 AIB n 1 13 AIB n 1 14 LYS n 1 15 GLU n 1 16 AIB n 1 17 AIB n 1 18 AIB n 1 19 AIB n 1 20 LYS n 1 21 GLU n 1 22 AIB n 1 23 AIB n 1 24 AIB n 1 25 AIB n 1 26 LYS n 1 27 AIB n 1 28 AIB n 1 29 AIB n 1 30 TRP n 1 31 LYS n 1 32 GLY n 1 33 NH2 n 2 1 ACE n 2 2 GLY n 2 3 DGL n 2 4 AIB n 2 5 AIB n 2 6 AIB n 2 7 AIB n 2 8 DLY n 2 9 DGL n 2 10 AIB n 2 11 AIB n 2 12 AIB n 2 13 AIB n 2 14 DLY n 2 15 DGL n 2 16 AIB n 2 17 AIB n 2 18 AIB n 2 19 AIB n 2 20 DLY n 2 21 DGL n 2 22 AIB n 2 23 AIB n 2 24 AIB n 2 25 AIB n 2 26 DLY n 2 27 AIB n 2 28 AIB n 2 29 AIB n 2 30 DTR n 2 31 DLY n 2 32 GLY n 2 33 NH2 n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 33 'synthetic construct' ? 32630 ? 2 1 sample 1 33 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8BFD 8BFD ? 1 ? 1 2 PDB 8BFD 8BFD ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8BFD A 1 ? 33 ? 8BFD 0 ? 32 ? 0 32 2 2 8BFD B 1 ? 33 ? 8BFD 0 ? 32 ? 0 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DLY 'D-peptide linking' . D-LYSINE ? 'C6 H14 N2 O2' 146.188 DTR 'D-peptide linking' . D-TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8BFD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 28.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.12M Ethylene glycols, 0.1M (1.0M, pH 8.5 Tris (base); BICINE), 30% v/v (40% v/v PEG 500* MME; 20 % w/v PEG 20000)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 XE 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-02-11 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8BFD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 23.1 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2744 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.75 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.7 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.29 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star 0.999 _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.072 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 10.42 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 270 _reflns_shell.percent_possible_all 99.26 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.1358 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.993 _reflns_shell.pdbx_CC_star 0.998 _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.8300 _refine.aniso_B[1][2] -0.7700 _refine.aniso_B[1][3] 0.7200 _refine.aniso_B[2][2] 0.0700 _refine.aniso_B[2][3] -0.1200 _refine.aniso_B[3][3] -0.8100 _refine.B_iso_max 40.150 _refine.B_iso_mean 13.5970 _refine.B_iso_min 4.850 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9300 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8BFD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 23.1000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2475 _refine.ls_number_reflns_R_free 317 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7900 _refine.ls_percent_reflns_R_free 11.4000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2089 _refine.ls_R_factor_R_free 0.2564 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2029 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.3840 _refine.pdbx_overall_ESU_R_Free 0.2340 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 9.2170 _refine.overall_SU_ML 0.1330 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 23.1000 _refine_hist.number_atoms_solvent 34 _refine_hist.number_atoms_total 475 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 64 _refine_hist.pdbx_B_iso_mean_ligand 28.72 _refine_hist.pdbx_B_iso_mean_solvent 22.80 _refine_hist.pdbx_number_atoms_protein 430 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 0.012 438 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.016 471 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.593 1.697 649 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.650 1.570 1016 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.917 5.000 59 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 40.042 21.429 7 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.161 15.000 26 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 0.071 0.200 20 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 489 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 73 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.0000 _refine_ls_shell.d_res_low 2.0520 _refine_ls_shell.number_reflns_all 202 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_R_work 174 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2690 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2090 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 8BFD _struct.title 'Racemic structure of PK-7 (310HD-U2U5)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8BFD _struct_keywords.text 'alpha-helical, Aib, De Novo Protein' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 3 ? H N N 5 ? I N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 2 ? GLY A 32 ? GLY A 1 GLY A 31 1 ? 31 HELX_P HELX_P2 AA2 GLY B 2 ? DLY B 31 ? GLY B 1 DLY B 30 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? A ACE 0 A GLY 1 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale2 covale both ? A GLU 3 C ? ? ? 1_555 A AIB 4 N ? ? A GLU 2 A AIB 3 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A AIB 4 C ? ? ? 1_555 A AIB 5 N ? ? A AIB 3 A AIB 4 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A AIB 5 C ? ? ? 1_555 A AIB 6 N ? ? A AIB 4 A AIB 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A AIB 6 C ? ? ? 1_555 A AIB 7 N ? ? A AIB 5 A AIB 6 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale6 covale both ? A AIB 7 C ? ? ? 1_555 A LYS 8 N ? ? A AIB 6 A LYS 7 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale7 covale both ? A GLU 9 C ? ? ? 1_555 A AIB 10 N ? ? A GLU 8 A AIB 9 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale8 covale both ? A AIB 10 C ? ? ? 1_555 A AIB 11 N ? ? A AIB 9 A AIB 10 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale9 covale both ? A AIB 11 C ? ? ? 1_555 A AIB 12 N ? ? A AIB 10 A AIB 11 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale10 covale both ? A AIB 12 C ? ? ? 1_555 A AIB 13 N ? ? A AIB 11 A AIB 12 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale11 covale both ? A AIB 13 C ? ? ? 1_555 A LYS 14 N ? ? A AIB 12 A LYS 13 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale12 covale both ? A GLU 15 C ? ? ? 1_555 A AIB 16 N ? ? A GLU 14 A AIB 15 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale13 covale both ? A AIB 16 C ? ? ? 1_555 A AIB 17 N ? ? A AIB 15 A AIB 16 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale14 covale both ? A AIB 17 C ? ? ? 1_555 A AIB 18 N ? ? A AIB 16 A AIB 17 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale15 covale both ? A AIB 18 C ? ? ? 1_555 A AIB 19 N ? ? A AIB 17 A AIB 18 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale16 covale both ? A AIB 19 C ? ? ? 1_555 A LYS 20 N ? ? A AIB 18 A LYS 19 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale17 covale both ? A GLU 21 C ? ? ? 1_555 A AIB 22 N ? ? A GLU 20 A AIB 21 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale18 covale both ? A AIB 22 C ? ? ? 1_555 A AIB 23 N ? ? A AIB 21 A AIB 22 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale19 covale both ? A AIB 23 C ? ? ? 1_555 A AIB 24 N ? ? A AIB 22 A AIB 23 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale20 covale both ? A AIB 24 C ? ? ? 1_555 A AIB 25 N ? ? A AIB 23 A AIB 24 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale21 covale both ? A AIB 25 C ? ? ? 1_555 A LYS 26 N ? ? A AIB 24 A LYS 25 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale22 covale both ? A LYS 26 C ? ? ? 1_555 A AIB 27 N ? ? A LYS 25 A AIB 26 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale23 covale both ? A AIB 27 C ? ? ? 1_555 A AIB 28 N ? ? A AIB 26 A AIB 27 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale24 covale both ? A AIB 28 C ? ? ? 1_555 A AIB 29 N ? ? A AIB 27 A AIB 28 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale25 covale both ? A AIB 29 C ? ? ? 1_555 A TRP 30 N ? ? A AIB 28 A TRP 29 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale26 covale both ? A GLY 32 C ? ? ? 1_555 A NH2 33 N ? ? A GLY 31 A NH2 32 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale27 covale both ? B ACE 1 C ? ? ? 1_555 B GLY 2 N ? ? B ACE 0 B GLY 1 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale28 covale both ? B GLY 2 C ? ? ? 1_555 B DGL 3 N ? ? B GLY 1 B DGL 2 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale29 covale both ? B DGL 3 C ? ? ? 1_555 B AIB 4 N ? ? B DGL 2 B AIB 3 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale30 covale both ? B AIB 4 C ? ? ? 1_555 B AIB 5 N ? ? B AIB 3 B AIB 4 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale31 covale both ? B AIB 5 C ? ? ? 1_555 B AIB 6 N ? ? B AIB 4 B AIB 5 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale32 covale both ? B AIB 6 C ? ? ? 1_555 B AIB 7 N ? ? B AIB 5 B AIB 6 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale33 covale both ? B AIB 7 C ? ? ? 1_555 B DLY 8 N ? ? B AIB 6 B DLY 7 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale34 covale both ? B DLY 8 C ? ? ? 1_555 B DGL 9 N ? ? B DLY 7 B DGL 8 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale35 covale both ? B DGL 9 C ? ? ? 1_555 B AIB 10 N ? ? B DGL 8 B AIB 9 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale36 covale both ? B AIB 10 C ? ? ? 1_555 B AIB 11 N ? ? B AIB 9 B AIB 10 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale37 covale both ? B AIB 11 C ? ? ? 1_555 B AIB 12 N ? ? B AIB 10 B AIB 11 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale38 covale both ? B AIB 12 C ? ? ? 1_555 B AIB 13 N ? ? B AIB 11 B AIB 12 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale39 covale both ? B AIB 13 C ? ? ? 1_555 B DLY 14 N ? ? B AIB 12 B DLY 13 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale40 covale both ? B DLY 14 C ? ? ? 1_555 B DGL 15 N ? ? B DLY 13 B DGL 14 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale41 covale both ? B DGL 15 C ? ? ? 1_555 B AIB 16 N ? ? B DGL 14 B AIB 15 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale42 covale both ? B AIB 16 C ? ? ? 1_555 B AIB 17 N ? ? B AIB 15 B AIB 16 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale43 covale both ? B AIB 17 C ? ? ? 1_555 B AIB 18 N ? ? B AIB 16 B AIB 17 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale44 covale both ? B AIB 18 C ? ? ? 1_555 B AIB 19 N ? ? B AIB 17 B AIB 18 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale45 covale both ? B AIB 19 C ? ? ? 1_555 B DLY 20 N ? ? B AIB 18 B DLY 19 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale46 covale both ? B DLY 20 C ? ? ? 1_555 B DGL 21 N ? ? B DLY 19 B DGL 20 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale47 covale both ? B DGL 21 C ? ? ? 1_555 B AIB 22 N ? ? B DGL 20 B AIB 21 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale48 covale both ? B AIB 22 C ? ? ? 1_555 B AIB 23 N ? ? B AIB 21 B AIB 22 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale49 covale both ? B AIB 23 C ? ? ? 1_555 B AIB 24 N ? ? B AIB 22 B AIB 23 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale50 covale both ? B AIB 24 C ? ? ? 1_555 B AIB 25 N ? ? B AIB 23 B AIB 24 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale51 covale both ? B AIB 25 C ? ? ? 1_555 B DLY 26 N ? ? B AIB 24 B DLY 25 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale52 covale both ? B DLY 26 C ? ? ? 1_555 B AIB 27 N ? ? B DLY 25 B AIB 26 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale53 covale both ? B AIB 27 C ? ? ? 1_555 B AIB 28 N ? ? B AIB 26 B AIB 27 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale54 covale both ? B AIB 28 C ? ? ? 1_555 B AIB 29 N ? ? B AIB 27 B AIB 28 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale55 covale both ? B AIB 29 C ? ? ? 1_555 B DTR 30 N ? ? B AIB 28 B DTR 29 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale56 covale both ? B DTR 30 C ? ? ? 1_555 B DLY 31 N ? ? B DTR 29 B DLY 30 1_555 ? ? ? ? ? ? ? 1.338 ? ? metalc1 metalc ? ? A GLU 21 O ? ? ? 1_555 C NA . NA ? ? A GLU 20 A NA 101 1_555 ? ? ? ? ? ? ? 2.787 ? ? metalc2 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 102 A HOH 201 1_555 ? ? ? ? ? ? ? 2.730 ? ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 102 A HOH 208 1_555 ? ? ? ? ? ? ? 3.001 ? ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 102 A HOH 213 1_646 ? ? ? ? ? ? ? 2.960 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 102 B HOH 207 1_656 ? ? ? ? ? ? ? 2.586 ? ? metalc6 metalc ? ? H HOH . O ? ? ? 1_455 G NA . NA ? ? A HOH 216 B NA 102 1_555 ? ? ? ? ? ? ? 2.670 ? ? metalc7 metalc ? ? B DLY 8 O ? ? ? 1_555 G NA . NA ? ? B DLY 7 B NA 102 1_555 ? ? ? ? ? ? ? 3.011 ? ? metalc8 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 101 B HOH 211 1_555 ? ? ? ? ? ? ? 2.385 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _atom_sites.entry_id 8BFD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.047103 _atom_sites.fract_transf_matrix[1][2] 0.004332 _atom_sites.fract_transf_matrix[1][3] 0.022184 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.045844 _atom_sites.fract_transf_matrix[2][3] 0.016286 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.043293 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N NA O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 GLY 2 1 1 GLY GLY A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 AIB 4 3 3 AIB AIB A . n A 1 5 AIB 5 4 4 AIB AIB A . n A 1 6 AIB 6 5 5 AIB AIB A . n A 1 7 AIB 7 6 6 AIB AIB A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 AIB 10 9 9 AIB AIB A . n A 1 11 AIB 11 10 10 AIB AIB A . n A 1 12 AIB 12 11 11 AIB AIB A . n A 1 13 AIB 13 12 12 AIB AIB A . n A 1 14 LYS 14 13 13 LYS LYS A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 AIB 16 15 15 AIB AIB A . n A 1 17 AIB 17 16 16 AIB AIB A . n A 1 18 AIB 18 17 17 AIB AIB A . n A 1 19 AIB 19 18 18 AIB AIB A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 AIB 22 21 21 AIB AIB A . n A 1 23 AIB 23 22 22 AIB AIB A . n A 1 24 AIB 24 23 23 AIB AIB A . n A 1 25 AIB 25 24 24 AIB AIB A . n A 1 26 LYS 26 25 25 LYS LYS A . n A 1 27 AIB 27 26 26 AIB AIB A . n A 1 28 AIB 28 27 27 AIB AIB A . n A 1 29 AIB 29 28 28 AIB AIB A . n A 1 30 TRP 30 29 29 TRP TRP A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 NH2 33 32 32 NH2 NH2 A . n B 2 1 ACE 1 0 0 ACE ACE B . n B 2 2 GLY 2 1 1 GLY GLY B . n B 2 3 DGL 3 2 2 DGL DGL B . n B 2 4 AIB 4 3 3 AIB AIB B . n B 2 5 AIB 5 4 4 AIB AIB B . n B 2 6 AIB 6 5 5 AIB AIB B . n B 2 7 AIB 7 6 6 AIB AIB B . n B 2 8 DLY 8 7 7 DLY DLY B . n B 2 9 DGL 9 8 8 DGL DGL B . n B 2 10 AIB 10 9 9 AIB AIB B . n B 2 11 AIB 11 10 10 AIB AIB B . n B 2 12 AIB 12 11 11 AIB AIB B . n B 2 13 AIB 13 12 12 AIB AIB B . n B 2 14 DLY 14 13 13 DLY DLY B . n B 2 15 DGL 15 14 14 DGL DGL B . n B 2 16 AIB 16 15 15 AIB AIB B . n B 2 17 AIB 17 16 16 AIB AIB B . n B 2 18 AIB 18 17 17 AIB AIB B . n B 2 19 AIB 19 18 18 AIB AIB B . n B 2 20 DLY 20 19 19 DLY DLY B . n B 2 21 DGL 21 20 20 DGL DGL B . n B 2 22 AIB 22 21 21 AIB AIB B . n B 2 23 AIB 23 22 22 AIB AIB B . n B 2 24 AIB 24 23 23 AIB AIB B . n B 2 25 AIB 25 24 24 AIB AIB B . n B 2 26 DLY 26 25 25 DLY DLY B . n B 2 27 AIB 27 26 26 AIB AIB B . n B 2 28 AIB 28 27 27 AIB AIB B . n B 2 29 AIB 29 28 28 AIB AIB B . n B 2 30 DTR 30 29 29 DTR DTR B . n B 2 31 DLY 31 30 30 DLY DLY B . n B 2 32 GLY 32 31 ? ? ? B . n B 2 33 NH2 33 32 ? ? ? B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email d.n.woolfson@bristol.ac.uk _pdbx_contact_author.name_first Derek _pdbx_contact_author.name_last Woolfson _pdbx_contact_author.name_mi N. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0394-3202 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA 1 101 2 NA NA A . D 3 NA 1 102 3 NA NA A . E 4 PEG 1 103 5 PEG PEG A . F 3 NA 1 101 1 NA NA B . G 3 NA 1 102 4 NA NA B . H 5 HOH 1 201 15 HOH HOH A . H 5 HOH 2 202 25 HOH HOH A . H 5 HOH 3 203 14 HOH HOH A . H 5 HOH 4 204 3 HOH HOH A . H 5 HOH 5 205 2 HOH HOH A . H 5 HOH 6 206 19 HOH HOH A . H 5 HOH 7 207 20 HOH HOH A . H 5 HOH 8 208 5 HOH HOH A . H 5 HOH 9 209 17 HOH HOH A . H 5 HOH 10 210 24 HOH HOH A . H 5 HOH 11 211 9 HOH HOH A . H 5 HOH 12 212 22 HOH HOH A . H 5 HOH 13 213 30 HOH HOH A . H 5 HOH 14 214 26 HOH HOH A . H 5 HOH 15 215 28 HOH HOH A . H 5 HOH 16 216 23 HOH HOH A . H 5 HOH 17 217 12 HOH HOH A . H 5 HOH 18 218 27 HOH HOH A . I 5 HOH 1 201 10 HOH HOH B . I 5 HOH 2 202 7 HOH HOH B . I 5 HOH 3 203 8 HOH HOH B . I 5 HOH 4 204 33 HOH HOH B . I 5 HOH 5 205 4 HOH HOH B . I 5 HOH 6 206 1 HOH HOH B . I 5 HOH 7 207 6 HOH HOH B . I 5 HOH 8 208 11 HOH HOH B . I 5 HOH 9 209 21 HOH HOH B . I 5 HOH 10 210 13 HOH HOH B . I 5 HOH 11 211 18 HOH HOH B . I 5 HOH 12 212 16 HOH HOH B . I 5 HOH 13 213 32 HOH HOH B . I 5 HOH 14 214 34 HOH HOH B . I 5 HOH 15 215 31 HOH HOH B . I 5 HOH 16 216 29 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,H 2 1 B,F,G,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 201 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O ? H HOH . ? A HOH 208 ? 1_555 75.5 ? 2 O ? H HOH . ? A HOH 201 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O ? H HOH . ? A HOH 213 ? 1_646 124.9 ? 3 O ? H HOH . ? A HOH 208 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O ? H HOH . ? A HOH 213 ? 1_646 113.3 ? 4 O ? H HOH . ? A HOH 201 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O ? I HOH . ? B HOH 207 ? 1_656 104.6 ? 5 O ? H HOH . ? A HOH 208 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O ? I HOH . ? B HOH 207 ? 1_656 50.8 ? 6 O ? H HOH . ? A HOH 213 ? 1_646 NA ? D NA . ? A NA 102 ? 1_555 O ? I HOH . ? B HOH 207 ? 1_656 123.2 ? 7 O ? H HOH . ? A HOH 216 ? 1_455 NA ? G NA . ? B NA 102 ? 1_555 O ? B DLY 8 ? B DLY 7 ? 1_555 132.4 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-11-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 0.4532 3.4586 1.7068 0.0157 ? -0.0008 ? -0.0097 ? 0.0050 ? -0.0049 ? 0.0337 ? 10.6517 ? -9.1369 ? 9.1780 ? 11.6190 ? -9.4049 ? 9.8804 ? -0.0140 ? 0.0874 ? -0.0941 ? 0.1483 ? -0.0380 ? 0.1704 ? -0.1866 ? 0.0695 ? 0.0520 ? 2 'X-RAY DIFFRACTION' ? refined -2.0734 -2.8286 -2.8008 0.0088 ? 0.0010 ? -0.0051 ? 0.0042 ? -0.0048 ? 0.0358 ? 9.1533 ? -8.4510 ? 8.4209 ? 10.3823 ? -8.8376 ? 10.2129 ? 0.1006 ? -0.0311 ? -0.2055 ? -0.0483 ? 0.1056 ? 0.2460 ? 0.1874 ? -0.0773 ? -0.2062 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 0 ? ? ? A 32 ? ? ? 2 'X-RAY DIFFRACTION' 2 ? ? B 0 ? ? ? B 30 ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? Arcimboldo ? ? ? . 5 # _pdbx_entry_details.entry_id 8BFD _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 7 ? CD ? A LYS 8 CD 2 1 Y 1 A LYS 7 ? CE ? A LYS 8 CE 3 1 Y 1 A LYS 7 ? NZ ? A LYS 8 NZ 4 1 Y 1 B DLY 30 ? CG ? B DLY 31 CG 5 1 Y 1 B DLY 30 ? CD ? B DLY 31 CD 6 1 Y 1 B DLY 30 ? CE ? B DLY 31 CE 7 1 Y 1 B DLY 30 ? NZ ? B DLY 31 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 31 ? B GLY 32 2 1 Y 1 B NH2 32 ? B NH2 33 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' BB/L01386X/1 1 'Biotechnology and Biological Sciences Research Council (BBSRC)' 'United Kingdom' BB/R00661X/1 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'equilibrium centrifugation' _pdbx_struct_assembly_auth_evidence.details ? #