HEADER TRANSFERASE 28-OCT-22 8BGY TITLE O-METHYLTRANSFERASE PLU4890 IN COMPLEX WITH SAH AND AQ-284A COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSFERASE PLU4890; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS LAUMONDII SUBSP. LAUMONDII TTO1; SOURCE 3 ORGANISM_TAXID: 243265; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, POLYKETIDE, ANTHRAQUINONE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.HUBER,M.GROLL REVDAT 5 07-FEB-24 8BGY 1 REMARK REVDAT 4 15-NOV-23 8BGY 1 SOURCE REVDAT 3 17-MAY-23 8BGY 1 JRNL REVDAT 2 05-APR-23 8BGY 1 JRNL REVDAT 1 08-MAR-23 8BGY 0 JRNL AUTH E.M.HUBER,L.KRELING,A.K.HEINRICH,M.DUNNEBACKE,A.POTHIG, JRNL AUTH 2 H.B.BODE,M.GROLL JRNL TITL A SET OF CLOSELY RELATED METHYLTRANSFERASES FOR JRNL TITL 2 SITE-SPECIFIC TAILORING OF ANTHRAQUINONE PIGMENTS. JRNL REF STRUCTURE V. 31 573 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 36963398 JRNL DOI 10.1016/J.STR.2023.03.001 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 107439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5655 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8047 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 424 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 190 REMARK 3 SOLVENT ATOMS : 439 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.55000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.461 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10815 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 10076 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14600 ; 1.141 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 23203 ; 1.058 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1292 ; 5.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 584 ;30.986 ;22.842 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1912 ;12.472 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;17.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1342 ; 0.035 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12271 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 20891 ; 0.167 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0728 -11.3080 17.2588 REMARK 3 T TENSOR REMARK 3 T11: 0.0243 T22: 0.0590 REMARK 3 T33: 0.0312 T12: 0.0068 REMARK 3 T13: -0.0264 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.1341 L22: 0.0687 REMARK 3 L33: 0.3966 L12: -0.0232 REMARK 3 L13: -0.0885 L23: -0.0538 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.0338 S13: 0.0052 REMARK 3 S21: 0.0062 S22: 0.0097 S23: -0.0012 REMARK 3 S31: -0.0196 S32: 0.0317 S33: 0.0047 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 402 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4516 -12.2831 -18.2837 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0489 REMARK 3 T33: 0.0335 T12: -0.0046 REMARK 3 T13: -0.0284 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.0805 L22: 0.0375 REMARK 3 L33: 0.3951 L12: 0.0229 REMARK 3 L13: -0.0169 L23: 0.0853 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0171 S13: 0.0014 REMARK 3 S21: -0.0111 S22: 0.0048 S23: 0.0056 REMARK 3 S31: -0.0239 S32: -0.0162 S33: 0.0061 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 402 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1230 6.2353 -64.1980 REMARK 3 T TENSOR REMARK 3 T11: 0.0201 T22: 0.0565 REMARK 3 T33: 0.0344 T12: -0.0021 REMARK 3 T13: -0.0251 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.2728 L22: 0.0898 REMARK 3 L33: 0.1502 L12: 0.0989 REMARK 3 L13: 0.1064 L23: 0.0296 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.0367 S13: -0.0140 REMARK 3 S21: 0.0143 S22: -0.0172 S23: -0.0067 REMARK 3 S31: 0.0045 S32: -0.0115 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 402 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0117 -33.3021 -65.0002 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0545 REMARK 3 T33: 0.0355 T12: -0.0007 REMARK 3 T13: -0.0242 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.1967 L22: 0.0737 REMARK 3 L33: 0.2211 L12: 0.0428 REMARK 3 L13: 0.1152 L23: 0.0274 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0215 S13: -0.0128 REMARK 3 S21: 0.0107 S22: -0.0075 S23: -0.0060 REMARK 3 S31: 0.0087 S32: 0.0012 S33: -0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8BGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116636 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8BGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5, 30 % PEG8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.63000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 15.96575 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -38.63000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -166.11451 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 279 143.27 -170.97 REMARK 500 ASP B 111 46.14 -143.84 REMARK 500 ASN B 164 -53.00 -122.12 REMARK 500 ASN D 164 -56.50 -123.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 501 O REMARK 620 2 ASP D 205 OD2 106.5 REMARK 620 3 TYR D 219 OH 134.2 108.7 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8BGT RELATED DB: PDB DBREF1 8BGY A 1 318 UNP A0A6L9JR93_PHOLM DBREF2 8BGY A A0A6L9JR93 1 318 DBREF1 8BGY B 1 318 UNP A0A6L9JR93_PHOLM DBREF2 8BGY B A0A6L9JR93 1 318 DBREF1 8BGY C 1 318 UNP A0A6L9JR93_PHOLM DBREF2 8BGY C A0A6L9JR93 1 318 DBREF1 8BGY D 1 318 UNP A0A6L9JR93_PHOLM DBREF2 8BGY D A0A6L9JR93 1 318 SEQADV 8BGY SER A 0 UNP A0A6L9JR9 EXPRESSION TAG SEQADV 8BGY SER B 0 UNP A0A6L9JR9 EXPRESSION TAG SEQADV 8BGY SER C 0 UNP A0A6L9JR9 EXPRESSION TAG SEQADV 8BGY SER D 0 UNP A0A6L9JR9 EXPRESSION TAG SEQRES 1 A 319 SER MET LEU THR GLU LEU ILE ALA SER ASN ARG ARG SER SEQRES 2 A 319 ALA ALA ILE HIS ALA PHE VAL ASP THR GLY LEU SER THR SEQRES 3 A 319 HIS PHE LYS ASP GLY ILE TYR VAL ASP ILE SER GLU LEU SEQRES 4 A 319 SER ARG LYS SER GLY VAL ASN TYR ALA ARG PHE SER ARG SEQRES 5 A 319 LEU CYS ASP PHE LEU VAL GLU MET GLY VAL LEU VAL SER SEQRES 6 A 319 ASN ASP ASN LYS PHE ARG LEU SER ASP GLU CYS HIS VAL SEQRES 7 A 319 PHE ALA ASN PRO GLU SER PHE GLU SER PHE MET ILE LYS SEQRES 8 A 319 LEU GLU ILE CYS SER HIS TYR SER ASN ALA TRP LEU MET SEQRES 9 A 319 TYR GLY LYS SER LEU PHE GLU ASP ASP GLY LYS SER ALA SEQRES 10 A 319 PHE GLU MET ALA HIS GLY ARG PRO PHE PHE GLU TYR LEU SEQRES 11 A 319 ASP GLY ASN LYS PHE LEU LYS SER ASN PHE ASP ALA LEU SEQRES 12 A 319 MET THR ARG VAL SER ASN LEU ILE VAL GLU LYS LEU LEU SEQRES 13 A 319 GLY ILE TYR ASP PHE ASN GLN HIS ASN ARG ILE LEU ASP SEQRES 14 A 319 VAL GLY GLY GLY GLU GLY GLU LEU LEU VAL ARG ILE SER SEQRES 15 A 319 GLU LYS VAL LYS GLY LYS HIS TYR ALA VAL LEU ASP ARG SEQRES 16 A 319 TYR SER GLU LEU PRO VAL SER ASP ASN ILE ASP PHE ILE SEQRES 17 A 319 ASN GLY ASN PHE LEU ASN SER ILE PRO SER GLY TYR ASP SEQRES 18 A 319 LEU TYR ILE LEU LYS ASN VAL LEU HIS ASN TRP SER ASP SEQRES 19 A 319 SER ASP SER ILE LEU ILE LEU GLU ASN PHE ARG LYS ALA SEQRES 20 A 319 MET ASP LYS ASN SER SER LEU LEU LEU ILE ASN MET VAL SEQRES 21 A 319 LYS GLU PRO GLU PHE SER ARG SER PHE ASP ILE LEU MET SEQRES 22 A 319 ASP VAL LEU PHE LEU GLY LYS GLU ARG SER PHE THR GLU SEQRES 23 A 319 PHE GLU TYR LEU ALA ASN GLN ALA GLY LEU VAL VAL GLN SEQRES 24 A 319 GLU THR LYS VAL ILE ASP GLN SER TYR SER PRO TYR SER SEQRES 25 A 319 PHE ILE LYS LEU GLN ILE LYS SEQRES 1 B 319 SER MET LEU THR GLU LEU ILE ALA SER ASN ARG ARG SER SEQRES 2 B 319 ALA ALA ILE HIS ALA PHE VAL ASP THR GLY LEU SER THR SEQRES 3 B 319 HIS PHE LYS ASP GLY ILE TYR VAL ASP ILE SER GLU LEU SEQRES 4 B 319 SER ARG LYS SER GLY VAL ASN TYR ALA ARG PHE SER ARG SEQRES 5 B 319 LEU CYS ASP PHE LEU VAL GLU MET GLY VAL LEU VAL SER SEQRES 6 B 319 ASN ASP ASN LYS PHE ARG LEU SER ASP GLU CYS HIS VAL SEQRES 7 B 319 PHE ALA ASN PRO GLU SER PHE GLU SER PHE MET ILE LYS SEQRES 8 B 319 LEU GLU ILE CYS SER HIS TYR SER ASN ALA TRP LEU MET SEQRES 9 B 319 TYR GLY LYS SER LEU PHE GLU ASP ASP GLY LYS SER ALA SEQRES 10 B 319 PHE GLU MET ALA HIS GLY ARG PRO PHE PHE GLU TYR LEU SEQRES 11 B 319 ASP GLY ASN LYS PHE LEU LYS SER ASN PHE ASP ALA LEU SEQRES 12 B 319 MET THR ARG VAL SER ASN LEU ILE VAL GLU LYS LEU LEU SEQRES 13 B 319 GLY ILE TYR ASP PHE ASN GLN HIS ASN ARG ILE LEU ASP SEQRES 14 B 319 VAL GLY GLY GLY GLU GLY GLU LEU LEU VAL ARG ILE SER SEQRES 15 B 319 GLU LYS VAL LYS GLY LYS HIS TYR ALA VAL LEU ASP ARG SEQRES 16 B 319 TYR SER GLU LEU PRO VAL SER ASP ASN ILE ASP PHE ILE SEQRES 17 B 319 ASN GLY ASN PHE LEU ASN SER ILE PRO SER GLY TYR ASP SEQRES 18 B 319 LEU TYR ILE LEU LYS ASN VAL LEU HIS ASN TRP SER ASP SEQRES 19 B 319 SER ASP SER ILE LEU ILE LEU GLU ASN PHE ARG LYS ALA SEQRES 20 B 319 MET ASP LYS ASN SER SER LEU LEU LEU ILE ASN MET VAL SEQRES 21 B 319 LYS GLU PRO GLU PHE SER ARG SER PHE ASP ILE LEU MET SEQRES 22 B 319 ASP VAL LEU PHE LEU GLY LYS GLU ARG SER PHE THR GLU SEQRES 23 B 319 PHE GLU TYR LEU ALA ASN GLN ALA GLY LEU VAL VAL GLN SEQRES 24 B 319 GLU THR LYS VAL ILE ASP GLN SER TYR SER PRO TYR SER SEQRES 25 B 319 PHE ILE LYS LEU GLN ILE LYS SEQRES 1 C 319 SER MET LEU THR GLU LEU ILE ALA SER ASN ARG ARG SER SEQRES 2 C 319 ALA ALA ILE HIS ALA PHE VAL ASP THR GLY LEU SER THR SEQRES 3 C 319 HIS PHE LYS ASP GLY ILE TYR VAL ASP ILE SER GLU LEU SEQRES 4 C 319 SER ARG LYS SER GLY VAL ASN TYR ALA ARG PHE SER ARG SEQRES 5 C 319 LEU CYS ASP PHE LEU VAL GLU MET GLY VAL LEU VAL SER SEQRES 6 C 319 ASN ASP ASN LYS PHE ARG LEU SER ASP GLU CYS HIS VAL SEQRES 7 C 319 PHE ALA ASN PRO GLU SER PHE GLU SER PHE MET ILE LYS SEQRES 8 C 319 LEU GLU ILE CYS SER HIS TYR SER ASN ALA TRP LEU MET SEQRES 9 C 319 TYR GLY LYS SER LEU PHE GLU ASP ASP GLY LYS SER ALA SEQRES 10 C 319 PHE GLU MET ALA HIS GLY ARG PRO PHE PHE GLU TYR LEU SEQRES 11 C 319 ASP GLY ASN LYS PHE LEU LYS SER ASN PHE ASP ALA LEU SEQRES 12 C 319 MET THR ARG VAL SER ASN LEU ILE VAL GLU LYS LEU LEU SEQRES 13 C 319 GLY ILE TYR ASP PHE ASN GLN HIS ASN ARG ILE LEU ASP SEQRES 14 C 319 VAL GLY GLY GLY GLU GLY GLU LEU LEU VAL ARG ILE SER SEQRES 15 C 319 GLU LYS VAL LYS GLY LYS HIS TYR ALA VAL LEU ASP ARG SEQRES 16 C 319 TYR SER GLU LEU PRO VAL SER ASP ASN ILE ASP PHE ILE SEQRES 17 C 319 ASN GLY ASN PHE LEU ASN SER ILE PRO SER GLY TYR ASP SEQRES 18 C 319 LEU TYR ILE LEU LYS ASN VAL LEU HIS ASN TRP SER ASP SEQRES 19 C 319 SER ASP SER ILE LEU ILE LEU GLU ASN PHE ARG LYS ALA SEQRES 20 C 319 MET ASP LYS ASN SER SER LEU LEU LEU ILE ASN MET VAL SEQRES 21 C 319 LYS GLU PRO GLU PHE SER ARG SER PHE ASP ILE LEU MET SEQRES 22 C 319 ASP VAL LEU PHE LEU GLY LYS GLU ARG SER PHE THR GLU SEQRES 23 C 319 PHE GLU TYR LEU ALA ASN GLN ALA GLY LEU VAL VAL GLN SEQRES 24 C 319 GLU THR LYS VAL ILE ASP GLN SER TYR SER PRO TYR SER SEQRES 25 C 319 PHE ILE LYS LEU GLN ILE LYS SEQRES 1 D 319 SER MET LEU THR GLU LEU ILE ALA SER ASN ARG ARG SER SEQRES 2 D 319 ALA ALA ILE HIS ALA PHE VAL ASP THR GLY LEU SER THR SEQRES 3 D 319 HIS PHE LYS ASP GLY ILE TYR VAL ASP ILE SER GLU LEU SEQRES 4 D 319 SER ARG LYS SER GLY VAL ASN TYR ALA ARG PHE SER ARG SEQRES 5 D 319 LEU CYS ASP PHE LEU VAL GLU MET GLY VAL LEU VAL SER SEQRES 6 D 319 ASN ASP ASN LYS PHE ARG LEU SER ASP GLU CYS HIS VAL SEQRES 7 D 319 PHE ALA ASN PRO GLU SER PHE GLU SER PHE MET ILE LYS SEQRES 8 D 319 LEU GLU ILE CYS SER HIS TYR SER ASN ALA TRP LEU MET SEQRES 9 D 319 TYR GLY LYS SER LEU PHE GLU ASP ASP GLY LYS SER ALA SEQRES 10 D 319 PHE GLU MET ALA HIS GLY ARG PRO PHE PHE GLU TYR LEU SEQRES 11 D 319 ASP GLY ASN LYS PHE LEU LYS SER ASN PHE ASP ALA LEU SEQRES 12 D 319 MET THR ARG VAL SER ASN LEU ILE VAL GLU LYS LEU LEU SEQRES 13 D 319 GLY ILE TYR ASP PHE ASN GLN HIS ASN ARG ILE LEU ASP SEQRES 14 D 319 VAL GLY GLY GLY GLU GLY GLU LEU LEU VAL ARG ILE SER SEQRES 15 D 319 GLU LYS VAL LYS GLY LYS HIS TYR ALA VAL LEU ASP ARG SEQRES 16 D 319 TYR SER GLU LEU PRO VAL SER ASP ASN ILE ASP PHE ILE SEQRES 17 D 319 ASN GLY ASN PHE LEU ASN SER ILE PRO SER GLY TYR ASP SEQRES 18 D 319 LEU TYR ILE LEU LYS ASN VAL LEU HIS ASN TRP SER ASP SEQRES 19 D 319 SER ASP SER ILE LEU ILE LEU GLU ASN PHE ARG LYS ALA SEQRES 20 D 319 MET ASP LYS ASN SER SER LEU LEU LEU ILE ASN MET VAL SEQRES 21 D 319 LYS GLU PRO GLU PHE SER ARG SER PHE ASP ILE LEU MET SEQRES 22 D 319 ASP VAL LEU PHE LEU GLY LYS GLU ARG SER PHE THR GLU SEQRES 23 D 319 PHE GLU TYR LEU ALA ASN GLN ALA GLY LEU VAL VAL GLN SEQRES 24 D 319 GLU THR LYS VAL ILE ASP GLN SER TYR SER PRO TYR SER SEQRES 25 D 319 PHE ILE LYS LEU GLN ILE LYS HET SAH A 401 26 HET QP3 A 402 21 HET SAH B 401 26 HET QP3 B 402 21 HET CL B 403 1 HET SAH C 401 26 HET QP3 C 402 21 HET SAH D 401 26 HET QP3 D 402 21 HET NA D 403 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM QP3 1,3-DIMETHOXY-8-OXIDANYL-ANTHRACENE-9,10-DIONE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 5 SAH 4(C14 H20 N6 O5 S) FORMUL 6 QP3 4(C16 H12 O5) FORMUL 9 CL CL 1- FORMUL 14 NA NA 1+ FORMUL 15 HOH *439(H2 O) HELIX 1 AA1 SER A 0 ALA A 7 1 8 HELIX 2 AA2 SER A 8 THR A 21 1 14 HELIX 3 AA3 GLY A 22 ILE A 31 5 10 HELIX 4 AA4 ASP A 34 GLY A 43 1 10 HELIX 5 AA5 ASN A 45 MET A 59 1 15 HELIX 6 AA6 ASP A 73 ASN A 80 5 8 HELIX 7 AA7 SER A 83 ILE A 93 1 11 HELIX 8 AA8 CYS A 94 LEU A 102 1 9 HELIX 9 AA9 MET A 103 LEU A 108 1 6 HELIX 10 AB1 SER A 115 GLY A 122 1 8 HELIX 11 AB2 PRO A 124 ASP A 130 1 7 HELIX 12 AB3 ASN A 132 TYR A 158 1 27 HELIX 13 AB4 GLY A 174 VAL A 184 1 11 HELIX 14 AB5 VAL A 227 TRP A 231 5 5 HELIX 15 AB6 SER A 232 MET A 247 1 16 HELIX 16 AB7 ARG A 266 LEU A 277 1 12 HELIX 17 AB8 SER A 282 ALA A 293 1 12 HELIX 18 AB9 MET B 1 ALA B 7 1 7 HELIX 19 AC1 SER B 8 THR B 21 1 14 HELIX 20 AC2 GLY B 22 ILE B 31 5 10 HELIX 21 AC3 ASP B 34 GLY B 43 1 10 HELIX 22 AC4 ASN B 45 MET B 59 1 15 HELIX 23 AC5 ASP B 73 ASN B 80 5 8 HELIX 24 AC6 SER B 83 ILE B 93 1 11 HELIX 25 AC7 CYS B 94 LEU B 102 1 9 HELIX 26 AC8 MET B 103 LEU B 108 1 6 HELIX 27 AC9 SER B 115 GLY B 122 1 8 HELIX 28 AD1 PRO B 124 ASP B 130 1 7 HELIX 29 AD2 ASN B 132 TYR B 158 1 27 HELIX 30 AD3 ASP B 159 HIS B 163 5 5 HELIX 31 AD4 GLY B 174 VAL B 184 1 11 HELIX 32 AD5 VAL B 227 TRP B 231 5 5 HELIX 33 AD6 SER B 232 MET B 247 1 16 HELIX 34 AD7 ARG B 266 LEU B 277 1 12 HELIX 35 AD8 SER B 282 ALA B 293 1 12 HELIX 36 AD9 MET C 1 ALA C 7 1 7 HELIX 37 AE1 SER C 8 THR C 21 1 14 HELIX 38 AE2 GLY C 22 ILE C 31 5 10 HELIX 39 AE3 ASP C 34 GLY C 43 1 10 HELIX 40 AE4 ASN C 45 MET C 59 1 15 HELIX 41 AE5 ASP C 73 ASN C 80 5 8 HELIX 42 AE6 SER C 83 ILE C 93 1 11 HELIX 43 AE7 CYS C 94 MET C 103 1 10 HELIX 44 AE8 MET C 103 LEU C 108 1 6 HELIX 45 AE9 SER C 115 GLY C 122 1 8 HELIX 46 AF1 PRO C 124 ASP C 130 1 7 HELIX 47 AF2 ASN C 132 TYR C 158 1 27 HELIX 48 AF3 GLY C 174 VAL C 184 1 11 HELIX 49 AF4 VAL C 227 TRP C 231 5 5 HELIX 50 AF5 SER C 232 MET C 247 1 16 HELIX 51 AF6 ARG C 266 LEU C 277 1 12 HELIX 52 AF7 SER C 282 ALA C 293 1 12 HELIX 53 AF8 MET D 1 ALA D 7 1 7 HELIX 54 AF9 SER D 8 THR D 21 1 14 HELIX 55 AG1 GLY D 22 ILE D 31 5 10 HELIX 56 AG2 ASP D 34 GLY D 43 1 10 HELIX 57 AG3 ASN D 45 MET D 59 1 15 HELIX 58 AG4 ASP D 73 ASN D 80 5 8 HELIX 59 AG5 SER D 83 ILE D 93 1 11 HELIX 60 AG6 CYS D 94 MET D 103 1 10 HELIX 61 AG7 MET D 103 LEU D 108 1 6 HELIX 62 AG8 SER D 115 GLY D 122 1 8 HELIX 63 AG9 PRO D 124 ASP D 130 1 7 HELIX 64 AH1 ASN D 132 TYR D 158 1 27 HELIX 65 AH2 GLY D 174 VAL D 184 1 11 HELIX 66 AH3 VAL D 227 TRP D 231 5 5 HELIX 67 AH4 SER D 232 MET D 247 1 16 HELIX 68 AH5 ARG D 266 LEU D 277 1 12 HELIX 69 AH6 SER D 282 GLY D 294 1 13 SHEET 1 AA1 2 LEU A 62 ASN A 65 0 SHEET 2 AA1 2 LYS A 68 LEU A 71 -1 O ARG A 70 N VAL A 63 SHEET 1 AA2 7 ASP A 205 ASN A 208 0 SHEET 2 AA2 7 HIS A 188 ASP A 193 1 N VAL A 191 O ILE A 207 SHEET 3 AA2 7 ARG A 165 VAL A 169 1 N ILE A 166 O HIS A 188 SHEET 4 AA2 7 LEU A 221 LYS A 225 1 O ILE A 223 N VAL A 169 SHEET 5 AA2 7 SER A 252 MET A 258 1 O LEU A 254 N TYR A 222 SHEET 6 AA2 7 PRO A 309 ILE A 317 -1 O LEU A 315 N LEU A 253 SHEET 7 AA2 7 LEU A 295 ASP A 304 -1 N VAL A 296 O GLN A 316 SHEET 1 AA3 2 LEU B 62 ASN B 65 0 SHEET 2 AA3 2 LYS B 68 LEU B 71 -1 O ARG B 70 N VAL B 63 SHEET 1 AA4 7 ASP B 205 ASN B 208 0 SHEET 2 AA4 7 HIS B 188 ASP B 193 1 N VAL B 191 O ILE B 207 SHEET 3 AA4 7 ARG B 165 VAL B 169 1 N ILE B 166 O HIS B 188 SHEET 4 AA4 7 LEU B 221 LYS B 225 1 O ILE B 223 N VAL B 169 SHEET 5 AA4 7 SER B 252 MET B 258 1 O LEU B 254 N TYR B 222 SHEET 6 AA4 7 PRO B 309 ILE B 317 -1 O SER B 311 N ASN B 257 SHEET 7 AA4 7 LEU B 295 ASP B 304 -1 N VAL B 296 O GLN B 316 SHEET 1 AA5 2 LEU C 62 ASN C 65 0 SHEET 2 AA5 2 LYS C 68 LEU C 71 -1 O ARG C 70 N VAL C 63 SHEET 1 AA6 7 ASP C 205 ASN C 208 0 SHEET 2 AA6 7 HIS C 188 ASP C 193 1 N VAL C 191 O ILE C 207 SHEET 3 AA6 7 ARG C 165 VAL C 169 1 N ILE C 166 O HIS C 188 SHEET 4 AA6 7 LEU C 221 LYS C 225 1 O ILE C 223 N VAL C 169 SHEET 5 AA6 7 SER C 252 MET C 258 1 O LEU C 254 N TYR C 222 SHEET 6 AA6 7 PRO C 309 ILE C 317 -1 O SER C 311 N ASN C 257 SHEET 7 AA6 7 LEU C 295 ASP C 304 -1 N VAL C 296 O GLN C 316 SHEET 1 AA7 2 LEU D 62 ASN D 65 0 SHEET 2 AA7 2 LYS D 68 LEU D 71 -1 O ARG D 70 N VAL D 63 SHEET 1 AA8 7 ILE D 204 ASN D 208 0 SHEET 2 AA8 7 HIS D 188 ASP D 193 1 N VAL D 191 O ILE D 207 SHEET 3 AA8 7 ARG D 165 VAL D 169 1 N ILE D 166 O HIS D 188 SHEET 4 AA8 7 LEU D 221 LYS D 225 1 O ILE D 223 N VAL D 169 SHEET 5 AA8 7 SER D 252 MET D 258 1 O LEU D 254 N TYR D 222 SHEET 6 AA8 7 PRO D 309 ILE D 317 -1 O SER D 311 N ASN D 257 SHEET 7 AA8 7 LEU D 295 ASP D 304 -1 N ILE D 303 O TYR D 310 LINK O HOH B 501 NA NA D 403 1555 1555 2.31 LINK OD2 ASP D 205 NA NA D 403 1555 1555 2.67 LINK OH TYR D 219 NA NA D 403 1555 1555 2.40 CRYST1 63.130 77.260 166.880 90.00 95.49 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015840 0.000000 0.001523 0.00000 SCALE2 0.000000 0.012943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006020 0.00000