HEADER VIRUS LIKE PARTICLE 01-NOV-22 8BI4 TITLE HELICAL SHELL OF CCMV CAPSID PROTEIN ON DNA ORIGAMI 6HB-2K COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAT PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COWPEA CHLOROTIC MOTTLE VIRUS; SOURCE 3 ORGANISM_TAXID: 12303 KEYWDS ORIGAMI, CAPSID, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR E.-P.KUMPULA,I.SEITZ,M.A.KOSTIAINEN,J.T.HUISKONEN REVDAT 3 25-OCT-23 8BI4 1 JRNL REVDAT 2 26-JUL-23 8BI4 1 JRNL REVDAT 1 05-JUL-23 8BI4 0 JRNL AUTH I.SEITZ,S.SAARINEN,E.P.KUMPULA,D.MCNEALE,E.ANAYA-PLAZA, JRNL AUTH 2 V.LAMPINEN,V.P.HYTONEN,F.SAINSBURY,J.J.L.M.CORNELISSEN, JRNL AUTH 3 V.LINKO,J.T.HUISKONEN,M.A.KOSTIAINEN JRNL TITL DNA-ORIGAMI-DIRECTED VIRUS CAPSID POLYMORPHISM. JRNL REF NAT NANOTECHNOL V. 18 1205 2023 JRNL REFN ESSN 1748-3395 JRNL PMID 37460794 JRNL DOI 10.1038/S41565-023-01443-X REMARK 2 REMARK 2 RESOLUTION. 4.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : ISOLDE, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL MODEL PDB:1CWP WAS FIRST MANUALLY REMARK 3 ADJUSTED TO DENSITY IN ISOLDE AND THEN REFINED IN PHENIX REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.300 REMARK 3 NUMBER OF PARTICLES : 695465 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8BI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126307. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HELICAL SHELL OF CCMV CAPSID REMARK 245 PROTEIN ON DNA ORIGAMI 6HB-2K REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2100.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 132-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.139173 -0.990268 0.000000 454.92510 REMARK 350 BIOMT2 2 0.990268 0.139173 0.000000 -31.81146 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -154.00000 REMARK 350 BIOMT1 3 -0.827081 -0.562083 0.000000 587.16093 REMARK 350 BIOMT2 3 0.562083 -0.827081 0.000000 310.88571 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -138.60000 REMARK 350 BIOMT1 4 -0.869495 0.493942 0.000000 338.05592 REMARK 350 BIOMT2 4 -0.493942 -0.869495 0.000000 580.83823 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -123.20000 REMARK 350 BIOMT1 5 0.059306 0.998240 0.000000 -14.14255 REMARK 350 BIOMT2 5 -0.998240 0.059306 0.000000 476.51229 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -107.80000 REMARK 350 BIOMT1 6 0.921863 0.387516 0.000000 -76.03292 REMARK 350 BIOMT2 6 -0.387516 0.921863 0.000000 114.43874 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -92.40000 REMARK 350 BIOMT1 7 0.754710 -0.656059 0.000000 221.51564 REMARK 350 BIOMT2 7 0.656059 0.754710 0.000000 -100.95049 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -77.00000 REMARK 350 BIOMT1 8 -0.255446 -0.966823 0.000000 546.14487 REMARK 350 BIOMT2 8 0.966823 -0.255446 0.000000 70.93183 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -61.60000 REMARK 350 BIOMT1 9 -0.980271 -0.197657 0.000000 535.24771 REMARK 350 BIOMT2 9 0.197657 -0.980271 0.000000 438.09518 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -46.20000 REMARK 350 BIOMT1 10 -0.610145 0.792290 0.000000 200.99617 REMARK 350 BIOMT2 10 -0.792290 -0.610145 0.000000 590.42238 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -30.80000 REMARK 350 BIOMT1 11 0.441506 0.897258 0.000000 -83.25470 REMARK 350 BIOMT2 11 -0.897258 0.441506 0.000000 357.76574 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -15.40000 REMARK 350 BIOMT1 12 0.441506 -0.897258 0.000000 357.76574 REMARK 350 BIOMT2 12 0.897258 0.441506 0.000000 -83.25470 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 15.40000 REMARK 350 BIOMT1 13 -0.610145 -0.792290 0.000000 590.42238 REMARK 350 BIOMT2 13 0.792290 -0.610145 0.000000 200.99617 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 30.80000 REMARK 350 BIOMT1 14 -0.980271 0.197657 0.000000 438.09518 REMARK 350 BIOMT2 14 -0.197657 -0.980271 0.000000 535.24771 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 46.20000 REMARK 350 BIOMT1 15 -0.255446 0.966823 0.000000 70.93183 REMARK 350 BIOMT2 15 -0.966823 -0.255446 0.000000 546.14487 REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 61.60000 REMARK 350 BIOMT1 16 0.754710 0.656059 0.000000 -100.95049 REMARK 350 BIOMT2 16 -0.656059 0.754710 0.000000 221.51564 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 77.00000 REMARK 350 BIOMT1 17 0.921863 -0.387516 0.000000 114.43874 REMARK 350 BIOMT2 17 0.387516 0.921863 0.000000 -76.03292 REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 92.40000 REMARK 350 BIOMT1 18 0.059306 -0.998240 0.000000 476.51229 REMARK 350 BIOMT2 18 0.998240 0.059306 0.000000 -14.14255 REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 107.80000 REMARK 350 BIOMT1 19 -0.869495 -0.493942 0.000000 580.83823 REMARK 350 BIOMT2 19 0.493942 -0.869495 0.000000 338.05592 REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 123.20000 REMARK 350 BIOMT1 20 -0.827081 0.562083 0.000000 310.88571 REMARK 350 BIOMT2 20 -0.562083 -0.827081 0.000000 587.16093 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 138.60000 REMARK 350 BIOMT1 21 0.139173 0.990268 0.000000 -31.81146 REMARK 350 BIOMT2 21 -0.990268 0.139173 0.000000 454.92510 REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 154.00000 REMARK 350 BIOMT1 22 0.949972 0.312335 0.000000 -64.46456 REMARK 350 BIOMT2 22 -0.312335 0.949972 0.000000 89.05430 REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 169.40000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -41 REMARK 465 SER A -40 REMARK 465 THR A -39 REMARK 465 VAL A -38 REMARK 465 GLY A -37 REMARK 465 THR A -36 REMARK 465 GLY A -35 REMARK 465 LYS A -34 REMARK 465 LEU A -33 REMARK 465 THR A -32 REMARK 465 ARG A -31 REMARK 465 ALA A -30 REMARK 465 GLN A -29 REMARK 465 ARG A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 ALA A -25 REMARK 465 ALA A -24 REMARK 465 ARG A -23 REMARK 465 LYS A -22 REMARK 465 ASN A -21 REMARK 465 LYS A -20 REMARK 465 ARG A -19 REMARK 465 ASN A -18 REMARK 465 THR A -17 REMARK 465 ARG A -16 REMARK 465 VAL A -15 REMARK 465 VAL A -14 REMARK 465 GLN A -13 REMARK 465 PRO A -12 REMARK 465 VAL A -11 REMARK 465 ILE A -10 REMARK 465 VAL A -9 REMARK 465 GLU A -8 REMARK 465 PRO A -7 REMARK 465 ILE A -6 REMARK 465 ALA A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 LYS A 0 REMARK 465 TYR A 148 REMARK 465 MET B -41 REMARK 465 SER B -40 REMARK 465 THR B -39 REMARK 465 VAL B -38 REMARK 465 GLY B -37 REMARK 465 THR B -36 REMARK 465 GLY B -35 REMARK 465 LYS B -34 REMARK 465 LEU B -33 REMARK 465 THR B -32 REMARK 465 ARG B -31 REMARK 465 ALA B -30 REMARK 465 GLN B -29 REMARK 465 ARG B -28 REMARK 465 ARG B -27 REMARK 465 ALA B -26 REMARK 465 ALA B -25 REMARK 465 ALA B -24 REMARK 465 ARG B -23 REMARK 465 LYS B -22 REMARK 465 ASN B -21 REMARK 465 LYS B -20 REMARK 465 ARG B -19 REMARK 465 ASN B -18 REMARK 465 THR B -17 REMARK 465 ARG B -16 REMARK 465 VAL B -15 REMARK 465 VAL B -14 REMARK 465 GLN B -13 REMARK 465 PRO B -12 REMARK 465 VAL B -11 REMARK 465 ILE B -10 REMARK 465 VAL B -9 REMARK 465 GLU B -8 REMARK 465 PRO B -7 REMARK 465 ILE B -6 REMARK 465 ALA B -5 REMARK 465 SER B -4 REMARK 465 GLY B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 LYS B 0 REMARK 465 TYR B 148 REMARK 465 MET C -41 REMARK 465 SER C -40 REMARK 465 THR C -39 REMARK 465 VAL C -38 REMARK 465 GLY C -37 REMARK 465 THR C -36 REMARK 465 GLY C -35 REMARK 465 LYS C -34 REMARK 465 LEU C -33 REMARK 465 THR C -32 REMARK 465 ARG C -31 REMARK 465 ALA C -30 REMARK 465 GLN C -29 REMARK 465 ARG C -28 REMARK 465 ARG C -27 REMARK 465 ALA C -26 REMARK 465 ALA C -25 REMARK 465 ALA C -24 REMARK 465 ARG C -23 REMARK 465 LYS C -22 REMARK 465 ASN C -21 REMARK 465 LYS C -20 REMARK 465 ARG C -19 REMARK 465 ASN C -18 REMARK 465 THR C -17 REMARK 465 ARG C -16 REMARK 465 VAL C -15 REMARK 465 VAL C -14 REMARK 465 GLN C -13 REMARK 465 PRO C -12 REMARK 465 VAL C -11 REMARK 465 ILE C -10 REMARK 465 VAL C -9 REMARK 465 GLU C -8 REMARK 465 PRO C -7 REMARK 465 ILE C -6 REMARK 465 ALA C -5 REMARK 465 SER C -4 REMARK 465 GLY C -3 REMARK 465 GLN C -2 REMARK 465 GLY C -1 REMARK 465 LYS C 0 REMARK 465 TYR C 148 REMARK 465 MET D -41 REMARK 465 SER D -40 REMARK 465 THR D -39 REMARK 465 VAL D -38 REMARK 465 GLY D -37 REMARK 465 THR D -36 REMARK 465 GLY D -35 REMARK 465 LYS D -34 REMARK 465 LEU D -33 REMARK 465 THR D -32 REMARK 465 ARG D -31 REMARK 465 ALA D -30 REMARK 465 GLN D -29 REMARK 465 ARG D -28 REMARK 465 ARG D -27 REMARK 465 ALA D -26 REMARK 465 ALA D -25 REMARK 465 ALA D -24 REMARK 465 ARG D -23 REMARK 465 LYS D -22 REMARK 465 ASN D -21 REMARK 465 LYS D -20 REMARK 465 ARG D -19 REMARK 465 ASN D -18 REMARK 465 THR D -17 REMARK 465 ARG D -16 REMARK 465 VAL D -15 REMARK 465 VAL D -14 REMARK 465 GLN D -13 REMARK 465 PRO D -12 REMARK 465 VAL D -11 REMARK 465 ILE D -10 REMARK 465 VAL D -9 REMARK 465 GLU D -8 REMARK 465 PRO D -7 REMARK 465 ILE D -6 REMARK 465 ALA D -5 REMARK 465 SER D -4 REMARK 465 GLY D -3 REMARK 465 GLN D -2 REMARK 465 GLY D -1 REMARK 465 LYS D 0 REMARK 465 TYR D 148 REMARK 465 MET E -41 REMARK 465 SER E -40 REMARK 465 THR E -39 REMARK 465 VAL E -38 REMARK 465 GLY E -37 REMARK 465 THR E -36 REMARK 465 GLY E -35 REMARK 465 LYS E -34 REMARK 465 LEU E -33 REMARK 465 THR E -32 REMARK 465 ARG E -31 REMARK 465 ALA E -30 REMARK 465 GLN E -29 REMARK 465 ARG E -28 REMARK 465 ARG E -27 REMARK 465 ALA E -26 REMARK 465 ALA E -25 REMARK 465 ALA E -24 REMARK 465 ARG E -23 REMARK 465 LYS E -22 REMARK 465 ASN E -21 REMARK 465 LYS E -20 REMARK 465 ARG E -19 REMARK 465 ASN E -18 REMARK 465 THR E -17 REMARK 465 ARG E -16 REMARK 465 VAL E -15 REMARK 465 VAL E -14 REMARK 465 GLN E -13 REMARK 465 PRO E -12 REMARK 465 VAL E -11 REMARK 465 ILE E -10 REMARK 465 VAL E -9 REMARK 465 GLU E -8 REMARK 465 PRO E -7 REMARK 465 ILE E -6 REMARK 465 ALA E -5 REMARK 465 SER E -4 REMARK 465 GLY E -3 REMARK 465 GLN E -2 REMARK 465 GLY E -1 REMARK 465 LYS E 0 REMARK 465 TYR E 148 REMARK 465 MET F -41 REMARK 465 SER F -40 REMARK 465 THR F -39 REMARK 465 VAL F -38 REMARK 465 GLY F -37 REMARK 465 THR F -36 REMARK 465 GLY F -35 REMARK 465 LYS F -34 REMARK 465 LEU F -33 REMARK 465 THR F -32 REMARK 465 ARG F -31 REMARK 465 ALA F -30 REMARK 465 GLN F -29 REMARK 465 ARG F -28 REMARK 465 ARG F -27 REMARK 465 ALA F -26 REMARK 465 ALA F -25 REMARK 465 ALA F -24 REMARK 465 ARG F -23 REMARK 465 LYS F -22 REMARK 465 ASN F -21 REMARK 465 LYS F -20 REMARK 465 ARG F -19 REMARK 465 ASN F -18 REMARK 465 THR F -17 REMARK 465 ARG F -16 REMARK 465 VAL F -15 REMARK 465 VAL F -14 REMARK 465 GLN F -13 REMARK 465 PRO F -12 REMARK 465 VAL F -11 REMARK 465 ILE F -10 REMARK 465 VAL F -9 REMARK 465 GLU F -8 REMARK 465 PRO F -7 REMARK 465 ILE F -6 REMARK 465 ALA F -5 REMARK 465 SER F -4 REMARK 465 GLY F -3 REMARK 465 GLN F -2 REMARK 465 GLY F -1 REMARK 465 LYS F 0 REMARK 465 TYR F 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 55 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU D 55 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU F 55 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 -3.34 64.10 REMARK 500 TYR A 96 73.24 -112.37 REMARK 500 PRO A 97 25.57 -74.36 REMARK 500 GLU A 98 -44.40 -156.74 REMARK 500 PRO A 146 -157.92 -74.07 REMARK 500 TRP B 13 -143.38 -152.21 REMARK 500 GLU B 98 40.08 -85.75 REMARK 500 ASP B 111 -11.32 -143.81 REMARK 500 TRP C 13 -152.80 -152.58 REMARK 500 LYS C 23 -3.77 63.61 REMARK 500 LYS D 23 -5.31 63.55 REMARK 500 ASP D 142 13.79 -147.69 REMARK 500 PRO D 146 -165.30 -66.64 REMARK 500 LYS E 23 -5.41 63.81 REMARK 500 TRP F 13 -154.34 -151.62 REMARK 500 LYS F 23 -16.49 66.22 REMARK 500 ALA F 94 51.31 -156.15 REMARK 500 ASP F 111 -11.73 -144.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 48 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-16076 RELATED DB: EMDB REMARK 900 HELICAL SHELL OF CCMV CAPSID PROTEIN ON DNA ORIGAMI 6HB-2K DBREF 8BI4 A -41 148 UNP Q548L8 Q548L8_CCMV 1 190 DBREF 8BI4 B -41 148 UNP Q548L8 Q548L8_CCMV 1 190 DBREF 8BI4 C -41 148 UNP Q548L8 Q548L8_CCMV 1 190 DBREF 8BI4 D -41 148 UNP Q548L8 Q548L8_CCMV 1 190 DBREF 8BI4 E -41 148 UNP Q548L8 Q548L8_CCMV 1 190 DBREF 8BI4 F -41 148 UNP Q548L8 Q548L8_CCMV 1 190 SEQRES 1 A 190 MET SER THR VAL GLY THR GLY LYS LEU THR ARG ALA GLN SEQRES 2 A 190 ARG ARG ALA ALA ALA ARG LYS ASN LYS ARG ASN THR ARG SEQRES 3 A 190 VAL VAL GLN PRO VAL ILE VAL GLU PRO ILE ALA SER GLY SEQRES 4 A 190 GLN GLY LYS ALA ILE LYS ALA TRP THR GLY TYR SER VAL SEQRES 5 A 190 SER LYS TRP THR ALA SER CYS ALA ALA ALA GLU ALA LYS SEQRES 6 A 190 VAL THR SER ALA ILE THR ILE SER LEU PRO ASN GLU LEU SEQRES 7 A 190 SER SER GLU ARG ASN LYS GLN LEU LYS VAL GLY ARG VAL SEQRES 8 A 190 LEU LEU TRP LEU GLY LEU LEU PRO SER VAL SER GLY THR SEQRES 9 A 190 VAL LYS SER CYS VAL THR GLU THR GLN THR THR ALA ALA SEQRES 10 A 190 ALA SER PHE GLN VAL ALA LEU ALA VAL ALA ASP ASN SER SEQRES 11 A 190 LYS ASP VAL VAL ALA ALA MET TYR PRO GLU ALA PHE LYS SEQRES 12 A 190 GLY ILE THR LEU GLU GLN LEU ALA ALA ASP LEU THR ILE SEQRES 13 A 190 TYR LEU TYR SER SER ALA ALA LEU THR GLU GLY ASP VAL SEQRES 14 A 190 ILE VAL HIS LEU GLU VAL GLU HIS VAL ARG PRO THR PHE SEQRES 15 A 190 ASP ASP SER PHE THR PRO VAL TYR SEQRES 1 B 190 MET SER THR VAL GLY THR GLY LYS LEU THR ARG ALA GLN SEQRES 2 B 190 ARG ARG ALA ALA ALA ARG LYS ASN LYS ARG ASN THR ARG SEQRES 3 B 190 VAL VAL GLN PRO VAL ILE VAL GLU PRO ILE ALA SER GLY SEQRES 4 B 190 GLN GLY LYS ALA ILE LYS ALA TRP THR GLY TYR SER VAL SEQRES 5 B 190 SER LYS TRP THR ALA SER CYS ALA ALA ALA GLU ALA LYS SEQRES 6 B 190 VAL THR SER ALA ILE THR ILE SER LEU PRO ASN GLU LEU SEQRES 7 B 190 SER SER GLU ARG ASN LYS GLN LEU LYS VAL GLY ARG VAL SEQRES 8 B 190 LEU LEU TRP LEU GLY LEU LEU PRO SER VAL SER GLY THR SEQRES 9 B 190 VAL LYS SER CYS VAL THR GLU THR GLN THR THR ALA ALA SEQRES 10 B 190 ALA SER PHE GLN VAL ALA LEU ALA VAL ALA ASP ASN SER SEQRES 11 B 190 LYS ASP VAL VAL ALA ALA MET TYR PRO GLU ALA PHE LYS SEQRES 12 B 190 GLY ILE THR LEU GLU GLN LEU ALA ALA ASP LEU THR ILE SEQRES 13 B 190 TYR LEU TYR SER SER ALA ALA LEU THR GLU GLY ASP VAL SEQRES 14 B 190 ILE VAL HIS LEU GLU VAL GLU HIS VAL ARG PRO THR PHE SEQRES 15 B 190 ASP ASP SER PHE THR PRO VAL TYR SEQRES 1 C 190 MET SER THR VAL GLY THR GLY LYS LEU THR ARG ALA GLN SEQRES 2 C 190 ARG ARG ALA ALA ALA ARG LYS ASN LYS ARG ASN THR ARG SEQRES 3 C 190 VAL VAL GLN PRO VAL ILE VAL GLU PRO ILE ALA SER GLY SEQRES 4 C 190 GLN GLY LYS ALA ILE LYS ALA TRP THR GLY TYR SER VAL SEQRES 5 C 190 SER LYS TRP THR ALA SER CYS ALA ALA ALA GLU ALA LYS SEQRES 6 C 190 VAL THR SER ALA ILE THR ILE SER LEU PRO ASN GLU LEU SEQRES 7 C 190 SER SER GLU ARG ASN LYS GLN LEU LYS VAL GLY ARG VAL SEQRES 8 C 190 LEU LEU TRP LEU GLY LEU LEU PRO SER VAL SER GLY THR SEQRES 9 C 190 VAL LYS SER CYS VAL THR GLU THR GLN THR THR ALA ALA SEQRES 10 C 190 ALA SER PHE GLN VAL ALA LEU ALA VAL ALA ASP ASN SER SEQRES 11 C 190 LYS ASP VAL VAL ALA ALA MET TYR PRO GLU ALA PHE LYS SEQRES 12 C 190 GLY ILE THR LEU GLU GLN LEU ALA ALA ASP LEU THR ILE SEQRES 13 C 190 TYR LEU TYR SER SER ALA ALA LEU THR GLU GLY ASP VAL SEQRES 14 C 190 ILE VAL HIS LEU GLU VAL GLU HIS VAL ARG PRO THR PHE SEQRES 15 C 190 ASP ASP SER PHE THR PRO VAL TYR SEQRES 1 D 190 MET SER THR VAL GLY THR GLY LYS LEU THR ARG ALA GLN SEQRES 2 D 190 ARG ARG ALA ALA ALA ARG LYS ASN LYS ARG ASN THR ARG SEQRES 3 D 190 VAL VAL GLN PRO VAL ILE VAL GLU PRO ILE ALA SER GLY SEQRES 4 D 190 GLN GLY LYS ALA ILE LYS ALA TRP THR GLY TYR SER VAL SEQRES 5 D 190 SER LYS TRP THR ALA SER CYS ALA ALA ALA GLU ALA LYS SEQRES 6 D 190 VAL THR SER ALA ILE THR ILE SER LEU PRO ASN GLU LEU SEQRES 7 D 190 SER SER GLU ARG ASN LYS GLN LEU LYS VAL GLY ARG VAL SEQRES 8 D 190 LEU LEU TRP LEU GLY LEU LEU PRO SER VAL SER GLY THR SEQRES 9 D 190 VAL LYS SER CYS VAL THR GLU THR GLN THR THR ALA ALA SEQRES 10 D 190 ALA SER PHE GLN VAL ALA LEU ALA VAL ALA ASP ASN SER SEQRES 11 D 190 LYS ASP VAL VAL ALA ALA MET TYR PRO GLU ALA PHE LYS SEQRES 12 D 190 GLY ILE THR LEU GLU GLN LEU ALA ALA ASP LEU THR ILE SEQRES 13 D 190 TYR LEU TYR SER SER ALA ALA LEU THR GLU GLY ASP VAL SEQRES 14 D 190 ILE VAL HIS LEU GLU VAL GLU HIS VAL ARG PRO THR PHE SEQRES 15 D 190 ASP ASP SER PHE THR PRO VAL TYR SEQRES 1 E 190 MET SER THR VAL GLY THR GLY LYS LEU THR ARG ALA GLN SEQRES 2 E 190 ARG ARG ALA ALA ALA ARG LYS ASN LYS ARG ASN THR ARG SEQRES 3 E 190 VAL VAL GLN PRO VAL ILE VAL GLU PRO ILE ALA SER GLY SEQRES 4 E 190 GLN GLY LYS ALA ILE LYS ALA TRP THR GLY TYR SER VAL SEQRES 5 E 190 SER LYS TRP THR ALA SER CYS ALA ALA ALA GLU ALA LYS SEQRES 6 E 190 VAL THR SER ALA ILE THR ILE SER LEU PRO ASN GLU LEU SEQRES 7 E 190 SER SER GLU ARG ASN LYS GLN LEU LYS VAL GLY ARG VAL SEQRES 8 E 190 LEU LEU TRP LEU GLY LEU LEU PRO SER VAL SER GLY THR SEQRES 9 E 190 VAL LYS SER CYS VAL THR GLU THR GLN THR THR ALA ALA SEQRES 10 E 190 ALA SER PHE GLN VAL ALA LEU ALA VAL ALA ASP ASN SER SEQRES 11 E 190 LYS ASP VAL VAL ALA ALA MET TYR PRO GLU ALA PHE LYS SEQRES 12 E 190 GLY ILE THR LEU GLU GLN LEU ALA ALA ASP LEU THR ILE SEQRES 13 E 190 TYR LEU TYR SER SER ALA ALA LEU THR GLU GLY ASP VAL SEQRES 14 E 190 ILE VAL HIS LEU GLU VAL GLU HIS VAL ARG PRO THR PHE SEQRES 15 E 190 ASP ASP SER PHE THR PRO VAL TYR SEQRES 1 F 190 MET SER THR VAL GLY THR GLY LYS LEU THR ARG ALA GLN SEQRES 2 F 190 ARG ARG ALA ALA ALA ARG LYS ASN LYS ARG ASN THR ARG SEQRES 3 F 190 VAL VAL GLN PRO VAL ILE VAL GLU PRO ILE ALA SER GLY SEQRES 4 F 190 GLN GLY LYS ALA ILE LYS ALA TRP THR GLY TYR SER VAL SEQRES 5 F 190 SER LYS TRP THR ALA SER CYS ALA ALA ALA GLU ALA LYS SEQRES 6 F 190 VAL THR SER ALA ILE THR ILE SER LEU PRO ASN GLU LEU SEQRES 7 F 190 SER SER GLU ARG ASN LYS GLN LEU LYS VAL GLY ARG VAL SEQRES 8 F 190 LEU LEU TRP LEU GLY LEU LEU PRO SER VAL SER GLY THR SEQRES 9 F 190 VAL LYS SER CYS VAL THR GLU THR GLN THR THR ALA ALA SEQRES 10 F 190 ALA SER PHE GLN VAL ALA LEU ALA VAL ALA ASP ASN SER SEQRES 11 F 190 LYS ASP VAL VAL ALA ALA MET TYR PRO GLU ALA PHE LYS SEQRES 12 F 190 GLY ILE THR LEU GLU GLN LEU ALA ALA ASP LEU THR ILE SEQRES 13 F 190 TYR LEU TYR SER SER ALA ALA LEU THR GLU GLY ASP VAL SEQRES 14 F 190 ILE VAL HIS LEU GLU VAL GLU HIS VAL ARG PRO THR PHE SEQRES 15 F 190 ASP ASP SER PHE THR PRO VAL TYR HELIX 1 AA1 THR A 73 ALA A 81 5 9 HELIX 2 AA2 THR A 104 ASP A 111 1 8 HELIX 3 AA3 PRO B 33 SER B 37 5 5 HELIX 4 AA4 THR B 73 ALA B 81 5 9 HELIX 5 AA5 GLU B 106 ASP B 111 1 6 HELIX 6 AA6 PRO C 33 SER C 37 5 5 HELIX 7 AA7 THR C 73 VAL C 80 5 8 HELIX 8 AA8 PRO C 97 LYS C 101 5 5 HELIX 9 AA9 THR C 104 ASP C 111 1 8 HELIX 10 AB1 THR D 73 ALA D 75 5 3 HELIX 11 AB2 ALA D 76 ALA D 81 1 6 HELIX 12 AB3 PRO D 97 LYS D 101 5 5 HELIX 13 AB4 THR D 104 ASP D 111 1 8 HELIX 14 AB5 PRO E 33 SER E 37 5 5 HELIX 15 AB6 THR E 73 VAL E 80 5 8 HELIX 16 AB7 PRO E 97 LYS E 101 5 5 HELIX 17 AB8 THR E 104 ASP E 111 1 8 HELIX 18 AB9 PRO F 33 SER F 37 5 5 HELIX 19 AC1 THR F 73 ALA F 81 5 9 HELIX 20 AC2 PRO F 97 LYS F 101 5 5 HELIX 21 AC3 THR F 104 ASP F 111 1 8 SHEET 1 AA1 4 TYR A 8 SER A 16 0 SHEET 2 AA1 4 VAL A 127 VAL A 136 -1 O VAL A 129 N ALA A 15 SHEET 3 AA1 4 VAL A 46 LEU A 55 -1 N GLY A 47 O GLU A 134 SHEET 4 AA1 4 ALA A 93 TYR A 96 -1 O TYR A 96 N VAL A 49 SHEET 1 AA2 4 THR A 25 ILE A 28 0 SHEET 2 AA2 4 LEU A 112 SER A 118 -1 O LEU A 116 N SER A 26 SHEET 3 AA2 4 VAL A 63 GLU A 69 -1 N LYS A 64 O TYR A 117 SHEET 4 AA2 4 ALA A 85 ASP A 86 -1 O ALA A 85 N SER A 65 SHEET 1 AA3 4 TYR B 8 TRP B 13 0 SHEET 2 AA3 4 LEU B 131 VAL B 136 -1 O HIS B 135 N SER B 9 SHEET 3 AA3 4 VAL B 46 LEU B 51 -1 N GLY B 47 O GLU B 134 SHEET 4 AA3 4 ALA B 94 MET B 95 -1 O ALA B 94 N LEU B 51 SHEET 1 AA4 4 SER B 26 ILE B 28 0 SHEET 2 AA4 4 LEU B 112 SER B 118 -1 O ILE B 114 N ILE B 28 SHEET 3 AA4 4 VAL B 63 GLU B 69 -1 N LYS B 64 O TYR B 117 SHEET 4 AA4 4 ALA B 85 ASP B 86 -1 O ALA B 85 N SER B 65 SHEET 1 AA5 2 GLY B 54 LEU B 55 0 SHEET 2 AA5 2 VAL B 127 ILE B 128 -1 O ILE B 128 N GLY B 54 SHEET 1 AA6 3 TYR C 8 SER C 16 0 SHEET 2 AA6 3 VAL C 127 VAL C 136 -1 O HIS C 135 N SER C 9 SHEET 3 AA6 3 GLY C 54 LEU C 55 -1 N GLY C 54 O ILE C 128 SHEET 1 AA7 4 TYR C 8 SER C 16 0 SHEET 2 AA7 4 VAL C 127 VAL C 136 -1 O HIS C 135 N SER C 9 SHEET 3 AA7 4 VAL C 46 LEU C 51 -1 N GLY C 47 O GLU C 134 SHEET 4 AA7 4 ALA C 94 MET C 95 -1 O ALA C 94 N LEU C 51 SHEET 1 AA8 4 THR C 25 ILE C 28 0 SHEET 2 AA8 4 LEU C 112 SER C 118 -1 O ILE C 114 N ILE C 28 SHEET 3 AA8 4 VAL C 63 GLU C 69 -1 N LYS C 64 O TYR C 117 SHEET 4 AA8 4 ALA C 85 ASP C 86 -1 O ALA C 85 N SER C 65 SHEET 1 AA9 4 TYR D 8 SER D 16 0 SHEET 2 AA9 4 VAL D 127 VAL D 136 -1 O VAL D 129 N ALA D 15 SHEET 3 AA9 4 VAL D 46 LEU D 55 -1 N GLY D 47 O GLU D 134 SHEET 4 AA9 4 ALA D 93 MET D 95 -1 O ALA D 94 N LEU D 51 SHEET 1 AB1 4 SER D 26 ILE D 28 0 SHEET 2 AB1 4 LEU D 112 SER D 118 -1 O ILE D 114 N ILE D 28 SHEET 3 AB1 4 VAL D 63 GLU D 69 -1 N LYS D 64 O TYR D 117 SHEET 4 AB1 4 ALA D 85 ASP D 86 -1 O ALA D 85 N SER D 65 SHEET 1 AB2 4 TYR E 8 ALA E 15 0 SHEET 2 AB2 4 VAL E 127 VAL E 136 -1 O HIS E 135 N SER E 9 SHEET 3 AB2 4 VAL E 46 LEU E 55 -1 N GLY E 47 O GLU E 134 SHEET 4 AB2 4 ALA E 93 MET E 95 -1 O ALA E 94 N LEU E 51 SHEET 1 AB3 4 THR E 25 ILE E 28 0 SHEET 2 AB3 4 LEU E 112 SER E 118 -1 O ILE E 114 N ILE E 28 SHEET 3 AB3 4 VAL E 63 GLU E 69 -1 N LYS E 64 O TYR E 117 SHEET 4 AB3 4 ALA E 85 ASP E 86 -1 O ALA E 85 N SER E 65 SHEET 1 AB4 3 TYR F 8 TRP F 13 0 SHEET 2 AB4 3 LEU F 131 VAL F 136 -1 O HIS F 135 N SER F 9 SHEET 3 AB4 3 VAL F 46 LEU F 51 -1 N GLY F 47 O GLU F 134 SHEET 1 AB5 4 THR F 25 ILE F 28 0 SHEET 2 AB5 4 LEU F 112 SER F 118 -1 O ILE F 114 N ILE F 28 SHEET 3 AB5 4 VAL F 63 GLU F 69 -1 N LYS F 64 O TYR F 117 SHEET 4 AB5 4 ALA F 85 ASP F 86 -1 O ALA F 85 N SER F 65 SHEET 1 AB6 2 GLY F 54 LEU F 55 0 SHEET 2 AB6 2 VAL F 127 ILE F 128 -1 O ILE F 128 N GLY F 54 CISPEP 1 TYR B 96 PRO B 97 0 -26.80 CISPEP 2 TYR C 96 PRO C 97 0 -26.84 CISPEP 3 TYR D 96 PRO D 97 0 -26.49 CISPEP 4 TYR E 96 PRO E 97 0 -27.59 CISPEP 5 TYR F 96 PRO F 97 0 -27.13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 499 0 0 21 54 0 0 6 6600 6 0 90 END