HEADER METAL TRANSPORT 03-NOV-22 8BJ9 TITLE X-RAY STRUCTURE OF THE CEUE HOMOLOGUE FROM PARAGEOBACILLUS TITLE 2 THERMOGLUCOSIDASIUS - 5LICAM COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAGEOBACILLUS THERMOGLUCOSIDASIUS; SOURCE 3 ORGANISM_TAXID: 1426; SOURCE 4 GENE: BAA00_15370; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PERIPLASMIC, SIDEROPHORE BINDING, BACTERIAL, APO PROTEIN, METAL KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR E.V.BLAGOVA,M.BENNETT,R.BOOTH,E.J.DODSON,A.-K.DUHME-KLAIR,K.S.WILSON REVDAT 4 07-FEB-24 8BJ9 1 REMARK REVDAT 3 09-AUG-23 8BJ9 1 JRNL REMARK REVDAT 2 19-JUL-23 8BJ9 1 JRNL REVDAT 1 12-JUL-23 8BJ9 0 JRNL AUTH E.V.BLAGOVA,A.H.MILLER,M.BENNETT,R.L.BOOTH,E.J.DODSON, JRNL AUTH 2 A.K.DUHME-KLAIR,K.S.WILSON JRNL TITL THERMOSTABLE HOMOLOGUES OF THE PERIPLASMIC JRNL TITL 2 SIDEROPHORE-BINDING PROTEIN CEUE FROM GEOBACILLUS JRNL TITL 3 STEAROTHERMOPHILUS AND PARAGEOBACILLUS THERMOGLUCOSIDASIUS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 694 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 37428843 JRNL DOI 10.1107/S2059798323004473 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.979 REMARK 3 FREE R VALUE TEST SET COUNT : 938 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1286 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.4210 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2167 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.69100 REMARK 3 B22 (A**2) : -4.53400 REMARK 3 B33 (A**2) : 0.84300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.317 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2245 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2135 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3015 ; 1.250 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4993 ; 0.419 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 7.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ; 5.789 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;16.912 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2465 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 395 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 469 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 17 ; 0.122 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1103 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 71 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.096 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1111 ; 3.285 ; 5.262 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1111 ; 3.285 ; 5.262 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1387 ; 4.361 ; 7.891 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1388 ; 4.359 ; 7.891 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1134 ; 3.636 ; 5.530 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1126 ; 3.456 ; 5.534 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1628 ; 5.096 ; 8.174 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1623 ; 5.034 ; 8.174 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3597 8.0893 -17.6544 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.2988 REMARK 3 T33: 0.1939 T12: -0.0269 REMARK 3 T13: 0.0092 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 2.2004 L22: 3.3853 REMARK 3 L33: 3.0798 L12: 0.4577 REMARK 3 L13: 0.5050 L23: 1.3109 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -0.3584 S13: 0.6187 REMARK 3 S21: 0.1776 S22: -0.0048 S23: 0.2415 REMARK 3 S31: -0.3693 S32: 0.1448 S33: 0.0635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8BJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976238 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18904 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.069 REMARK 200 RESOLUTION RANGE LOW (A) : 36.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 23.10 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 36.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 21.60 REMARK 200 R MERGE FOR SHELL (I) : 0.05200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 8BF6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: OPT 17. E9. 18% PEG 3350, 0.1M TRIS, REMARK 280 PH8.5, 0.05M ZNAC, CRYO ETHYLENE GLYCOL. LIGAND: 5MM FE(III) 5- REMARK 280 LICAM 1:10 RATIO PROTEIN:LIGAND., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.85600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.85600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.03150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.69600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.03150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.69600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.85600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.03150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.69600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.85600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.03150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.69600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 4 REMARK 465 ASP A 5 REMARK 465 ASN A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 ASN A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 ASN A 14 REMARK 465 PRO A 15 REMARK 465 LYS A 16 REMARK 465 ASN A 17 REMARK 465 ASP A 18 REMARK 465 SER A 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 105 H26 5LC A 302 1.34 REMARK 500 HE2 HIS A 215 FE FE A 301 1.51 REMARK 500 FE FE A 301 H23 5LC A 302 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 402 O HOH A 402 3654 2.00 REMARK 500 OE1 GLU A 211 OE1 GLU A 297 1455 2.10 REMARK 500 NZ LYS A 167 OE1 GLU A 211 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 147 CG GLU A 147 CD 0.114 REMARK 500 GLU A 155 CD GLU A 155 OE1 0.103 REMARK 500 GLU A 155 CD GLU A 155 OE2 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 103 -155.18 -136.81 REMARK 500 SER A 172 -154.36 -102.13 REMARK 500 GLU A 226 -62.82 -149.62 REMARK 500 ASN A 228 74.16 49.02 REMARK 500 LYS A 248 -72.61 -43.53 REMARK 500 THR A 259 171.19 -58.83 REMARK 500 ALA A 278 87.13 -151.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 306 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 54 O REMARK 620 2 GLU A 111 OE2 32.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 303 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 ASP A 88 OD2 0.0 REMARK 620 3 SO4 A 307 O3 124.4 124.4 REMARK 620 4 SO4 A 307 O3 128.6 128.6 9.3 REMARK 620 5 HOH A 412 O 84.8 84.8 96.2 88.2 REMARK 620 6 HOH A 412 O 92.7 92.7 88.2 96.1 175.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 304 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 90 OE2 REMARK 620 2 GLU A 94 OE1 133.2 REMARK 620 3 GLU A 94 OE2 91.9 47.2 REMARK 620 4 SO4 A 307 O1 112.0 102.9 149.6 REMARK 620 5 SO4 A 307 O2 137.4 74.2 121.3 28.9 REMARK 620 6 SO4 A 307 S 117.4 81.7 124.5 27.5 22.2 REMARK 620 7 SO4 A 307 O4 121.1 54.2 92.3 59.6 40.8 32.4 REMARK 620 8 SO4 A 307 S 101.5 96.4 134.1 26.1 36.5 16.6 43.4 REMARK 620 9 SO4 A 307 O4 102.7 118.0 164.9 17.4 44.2 44.6 76.9 39.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 305 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 151 OE1 REMARK 620 2 GLU A 151 OE1 0.0 REMARK 620 3 GLU A 155 OE2 71.9 71.9 REMARK 620 4 GLU A 155 OE1 72.8 72.8 35.7 REMARK 620 5 GLU A 155 OE2 71.9 71.9 0.0 35.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 215 NE2 REMARK 620 2 TYR A 276 OH 74.1 REMARK 620 3 5LC A 302 O25 99.0 94.5 REMARK 620 4 5LC A 302 O26 161.3 87.3 80.6 REMARK 620 5 5LC A 302 O23 92.6 166.6 85.9 105.9 REMARK 620 6 5LC A 302 O24 107.3 104.5 150.9 78.5 80.6 REMARK 620 N 1 2 3 4 5 DBREF1 8BJ9 A 1 297 UNP A0A1Y3Q1V3_PARTM DBREF2 8BJ9 A A0A1Y3Q1V3 22 318 SEQRES 1 A 297 CYS GLY ASN GLU ASP ASN ALA LYS ASN ALA SER SER SER SEQRES 2 A 297 ASN PRO LYS ASN ASP SER GLU GLU ILE THR ILE LYS HIS SEQRES 3 A 297 GLU LEU GLY GLU THR LYS VAL LYS LYS LYS PRO GLU LYS SEQRES 4 A 297 VAL VAL VAL PHE ASP PHE GLY VAL LEU ASP SER LEU ASP SEQRES 5 A 297 LYS LEU GLY VAL GLU VAL THR GLY VAL PRO LYS ALA ASN SEQRES 6 A 297 LEU PRO SER TYR LEU GLU LYS TYR LYS ASP SER LYS TYR SEQRES 7 A 297 GLU ASN VAL GLY GLY LEU MET GLU PRO ASP PHE GLU LYS SEQRES 8 A 297 ILE ASN GLU ILE ALA PRO ASP LEU ILE ILE ILE SER GLY SEQRES 9 A 297 ARG GLN ALA ASN SER TYR GLU LYS PHE ALA GLU ILE ALA SEQRES 10 A 297 PRO THR VAL TYR MET GLY ILE ASP THR LYS ASN TYR ILE SEQRES 11 A 297 ASP SER PHE ALA ASN ASN MET LYS THR LEU GLY LYS ILE SEQRES 12 A 297 PHE GLY LYS GLU LYS GLU VAL GLU LYS GLU LEU GLU SER SEQRES 13 A 297 ILE ASN LYS GLN ILE GLU ALA VAL LYS ALA LYS ALA GLU SEQRES 14 A 297 LYS THR SER GLY LYS ALA LEU ILE VAL LEU THR THR GLY SEQRES 15 A 297 GLY LYS VAL SER ALA TYR GLY PRO GLY SER ARG PHE GLY SEQRES 16 A 297 ILE ILE HIS ASP VAL LEU GLY ILE LYS PRO VAL ASP ALA SEQRES 17 A 297 ASN ILE GLU VAL SER THR HIS GLY GLN SER ILE SER PHE SEQRES 18 A 297 GLU TYR ILE ALA GLU LYS ASN PRO ASP TYR LEU PHE VAL SEQRES 19 A 297 VAL ASP ARG ASP ALA VAL VAL ALA GLY LYS PRO SER ALA SEQRES 20 A 297 LYS GLN THR ILE GLU ASN GLU LEU VAL LYS LYS THR ASN SEQRES 21 A 297 ALA TYR LYS ASN ASN ARG ILE ILE TYR LEU ASN PRO ASN SEQRES 22 A 297 TYR TRP TYR LEU ALA GLY GLY GLY LEU ILE SER VAL ALA SEQRES 23 A 297 GLU MET ILE ASN GLU VAL GLU LYS GLY ILE GLU HET FE A 301 1 HET 5LC A 302 49 HET NI A 303 1 HET NI A 304 1 HET NI A 305 1 HET NI A 306 1 HET SO4 A 307 5 HETNAM FE FE (III) ION HETNAM 5LC N,N'-PENTANE-1,5-DIYLBIS(2,3-DIHYDROXYBENZAMIDE) HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION FORMUL 2 FE FE 3+ FORMUL 3 5LC C19 H22 N2 O6 FORMUL 4 NI 4(NI 2+) FORMUL 8 SO4 O4 S 2- FORMUL 9 HOH *12(H2 O) HELIX 1 AA1 ASP A 44 GLY A 55 1 12 HELIX 2 AA2 PRO A 62 LEU A 66 5 5 HELIX 3 AA3 PRO A 67 ASP A 75 5 9 HELIX 4 AA4 ASP A 88 ALA A 96 1 9 HELIX 5 AA5 SER A 103 ASN A 108 5 6 HELIX 6 AA6 SER A 109 ALA A 117 1 9 HELIX 7 AA7 ASP A 125 LYS A 127 5 3 HELIX 8 AA8 ASN A 128 GLY A 145 1 18 HELIX 9 AA9 LYS A 146 THR A 171 1 26 HELIX 10 AB1 GLY A 195 VAL A 200 1 6 HELIX 11 AB2 SER A 220 ASN A 228 1 9 HELIX 12 AB3 ARG A 237 ALA A 242 1 6 HELIX 13 AB4 SER A 246 GLU A 252 1 7 HELIX 14 AB5 ASN A 253 LYS A 258 1 6 HELIX 15 AB6 THR A 259 ASN A 264 1 6 HELIX 16 AB7 ASN A 271 TYR A 276 1 6 HELIX 17 AB8 GLY A 281 GLU A 297 1 17 SHEET 1 AA1 2 GLU A 21 HIS A 26 0 SHEET 2 AA1 2 GLY A 29 LYS A 34 -1 O VAL A 33 N ILE A 22 SHEET 1 AA2 3 VAL A 40 VAL A 42 0 SHEET 2 AA2 3 LEU A 99 ILE A 102 1 O LEU A 99 N VAL A 41 SHEET 3 AA2 3 THR A 119 TYR A 121 1 O VAL A 120 N ILE A 100 SHEET 1 AA3 2 GLY A 60 VAL A 61 0 SHEET 2 AA3 2 GLU A 79 ASN A 80 1 O GLU A 79 N VAL A 61 SHEET 1 AA4 4 LYS A 204 PRO A 205 0 SHEET 2 AA4 4 LYS A 174 THR A 181 1 N ALA A 175 O LYS A 204 SHEET 3 AA4 4 LYS A 184 TYR A 188 -1 O TYR A 188 N ILE A 177 SHEET 4 AA4 4 GLN A 217 ILE A 219 -1 O GLN A 217 N ALA A 187 SHEET 1 AA5 4 LYS A 204 PRO A 205 0 SHEET 2 AA5 4 LYS A 174 THR A 181 1 N ALA A 175 O LYS A 204 SHEET 3 AA5 4 TYR A 231 ASP A 236 1 O PHE A 233 N VAL A 178 SHEET 4 AA5 4 ILE A 267 LEU A 270 1 O LEU A 270 N VAL A 234 LINK O LEU A 54 NI NI A 306 1555 1555 2.36 LINK OD2 ASP A 88 NI NI A 303 1555 1555 1.99 LINK OD2 ASP A 88 NI NI A 303 1555 3554 2.00 LINK OE2 GLU A 90 NI NI A 304 1555 3554 2.32 LINK OE1 GLU A 94 NI NI A 304 1555 1555 2.13 LINK OE2 GLU A 94 NI NI A 304 1555 3554 2.03 LINK OE2 GLU A 111 NI NI A 306 1555 1455 2.28 LINK OE1 GLU A 151 NI NI A 305 1555 1555 2.36 LINK OE1 GLU A 151 NI NI A 305 1555 4555 2.64 LINK OE2 GLU A 155 NI NI A 305 1555 1555 2.64 LINK OE1 GLU A 155 NI NI A 305 1555 4555 2.30 LINK OE2 GLU A 155 NI NI A 305 1555 4555 1.81 LINK NE2 HIS A 215 FE FE A 301 1555 1555 2.30 LINK OH TYR A 276 FE FE A 301 1555 1555 2.02 LINK FE FE A 301 O25 5LC A 302 1555 1555 2.01 LINK FE FE A 301 O26 5LC A 302 1555 1555 2.00 LINK FE FE A 301 O23 5LC A 302 1555 1555 1.99 LINK FE FE A 301 O24 5LC A 302 1555 1555 1.98 LINK NI NI A 303 O3 SO4 A 307 1555 1555 1.95 LINK NI NI A 303 O3 SO4 A 307 1555 3554 1.95 LINK NI NI A 303 O HOH A 412 1555 1555 2.11 LINK NI NI A 303 O HOH A 412 1555 3554 2.11 LINK NI NI A 304 O1 SO4 A 307 1555 1555 2.03 LINK NI NI A 304 O2 SO4 A 307 1555 1555 2.05 LINK NI NI A 304 S SO4 A 307 1555 1555 2.19 LINK NI NI A 304 O4 SO4 A 307 1555 1555 2.04 LINK NI NI A 304 S SO4 A 307 1555 3554 2.55 LINK NI NI A 304 O4 SO4 A 307 1555 3554 2.58 CRYST1 36.063 117.392 141.712 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027729 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007057 0.00000