HEADER OXIDOREDUCTASE 26-NOV-22 8BSX TITLE IPNS H270D VARIANT IN COMPLEX WITH FE AND ACV AFTER 10 MIN O2 EXPOSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLD_IPNS_H270D KEYWDS ISOPENICILLIN N SYNTHASE, ANTIOBIOTIC BIOSYNTHESIS, PENICILLIN, BETA KEYWDS 2 LACTAM, OXYGENASE, ANAEROBIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,C.J.SCHOFIELD REVDAT 1 13-DEC-23 8BSX 0 JRNL AUTH P.RABE,C.J.SCHOFIELD JRNL TITL IPNS H270D VARIANT IN COMPLEX WITH FE AND ACV AFTER 10 MIN JRNL TITL 2 O2 EXPOSURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2900 - 3.9200 1.00 2904 156 0.1466 0.1483 REMARK 3 2 3.9200 - 3.1100 1.00 2790 144 0.1432 0.1759 REMARK 3 3 3.1100 - 2.7200 1.00 2732 138 0.1632 0.2188 REMARK 3 4 2.7200 - 2.4700 1.00 2729 129 0.1624 0.1899 REMARK 3 5 2.4700 - 2.2900 1.00 2698 150 0.1556 0.1697 REMARK 3 6 2.2900 - 2.1600 1.00 2705 154 0.1524 0.2039 REMARK 3 7 2.1600 - 2.0500 1.00 2714 130 0.1507 0.1820 REMARK 3 8 2.0500 - 1.9600 1.00 2665 132 0.1427 0.1921 REMARK 3 9 1.9600 - 1.8900 1.00 2681 144 0.1516 0.1834 REMARK 3 10 1.8900 - 1.8200 1.00 2664 156 0.1584 0.2189 REMARK 3 11 1.8200 - 1.7600 1.00 2688 135 0.1679 0.1846 REMARK 3 12 1.7600 - 1.7100 1.00 2654 151 0.1721 0.1954 REMARK 3 13 1.7100 - 1.6700 1.00 2689 118 0.1812 0.2091 REMARK 3 14 1.6700 - 1.6300 1.00 2682 136 0.1732 0.2126 REMARK 3 15 1.6300 - 1.5900 1.00 2619 152 0.1859 0.2512 REMARK 3 16 1.5900 - 1.5600 1.00 2686 144 0.1919 0.2376 REMARK 3 17 1.5600 - 1.5300 1.00 2629 138 0.2084 0.2201 REMARK 3 18 1.5300 - 1.5000 1.00 2672 141 0.2086 0.2564 REMARK 3 19 1.5000 - 1.4700 1.00 2648 128 0.2336 0.2633 REMARK 3 20 1.4700 - 1.4500 1.00 2647 151 0.2589 0.2810 REMARK 3 21 1.4500 - 1.4200 1.00 2626 141 0.2802 0.2840 REMARK 3 22 1.4200 - 1.4000 1.00 2683 139 0.3002 0.3597 REMARK 3 23 1.4000 - 1.3800 1.00 2617 138 0.3067 0.3138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2840 REMARK 3 ANGLE : 0.877 3889 REMARK 3 CHIRALITY : 0.085 404 REMARK 3 PLANARITY : 0.007 524 REMARK 3 DIHEDRAL : 12.330 1039 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1279 -5.4552 11.5759 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1244 REMARK 3 T33: 0.0692 T12: -0.0040 REMARK 3 T13: 0.0168 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.9988 L22: 6.7124 REMARK 3 L33: 4.4972 L12: -0.1857 REMARK 3 L13: 0.0148 L23: 3.7776 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.0535 S13: -0.1648 REMARK 3 S21: 0.3309 S22: -0.0388 S23: 0.2900 REMARK 3 S31: 0.3448 S32: -0.2136 S33: 0.0638 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7843 -2.3957 13.5440 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1064 REMARK 3 T33: 0.0792 T12: -0.0228 REMARK 3 T13: 0.0086 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.2835 L22: 0.6252 REMARK 3 L33: 4.1167 L12: 0.0797 REMARK 3 L13: 1.3713 L23: -0.1503 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: -0.1025 S13: -0.0775 REMARK 3 S21: 0.0770 S22: -0.0395 S23: -0.0123 REMARK 3 S31: 0.1861 S32: -0.1429 S33: -0.0360 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2499 6.2477 -17.8013 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.0613 REMARK 3 T33: 0.0861 T12: 0.0165 REMARK 3 T13: -0.0126 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.6988 L22: 0.7179 REMARK 3 L33: 4.7072 L12: 0.2017 REMARK 3 L13: -1.8096 L23: -0.3630 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: 0.1989 S13: 0.0343 REMARK 3 S21: -0.0659 S22: 0.0038 S23: 0.0371 REMARK 3 S31: -0.2835 S32: -0.1933 S33: -0.0923 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5820 10.4618 -13.6929 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.0867 REMARK 3 T33: 0.0750 T12: 0.0008 REMARK 3 T13: 0.0072 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.0222 L22: 0.9248 REMARK 3 L33: 1.7104 L12: 0.2804 REMARK 3 L13: 0.0225 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.0804 S13: 0.1067 REMARK 3 S21: -0.0687 S22: 0.0478 S23: -0.0208 REMARK 3 S31: -0.2870 S32: 0.0150 S33: -0.0114 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9880 9.8253 5.6097 REMARK 3 T TENSOR REMARK 3 T11: 0.1533 T22: 0.0699 REMARK 3 T33: 0.0728 T12: -0.0190 REMARK 3 T13: 0.0131 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.6467 L22: 1.1871 REMARK 3 L33: 3.2343 L12: -0.6776 REMARK 3 L13: 0.5321 L23: -0.9897 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.0403 S13: 0.0514 REMARK 3 S21: 0.0306 S22: 0.0241 S23: -0.0145 REMARK 3 S31: -0.3377 S32: 0.0563 S33: -0.0181 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7645 -9.0421 -3.2361 REMARK 3 T TENSOR REMARK 3 T11: 0.1439 T22: 0.0828 REMARK 3 T33: 0.0888 T12: 0.0203 REMARK 3 T13: 0.0011 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.0875 L22: 0.5165 REMARK 3 L33: 1.5594 L12: 0.0117 REMARK 3 L13: 0.3943 L23: -0.0868 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: 0.0173 S13: -0.1527 REMARK 3 S21: -0.0430 S22: 0.0045 S23: -0.0017 REMARK 3 S31: 0.2415 S32: 0.0941 S33: -0.0615 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2167 -7.2245 -7.6452 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.0851 REMARK 3 T33: 0.0667 T12: -0.0033 REMARK 3 T13: -0.0090 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.0486 L22: 0.8414 REMARK 3 L33: 1.7249 L12: 0.0603 REMARK 3 L13: 0.3197 L23: 0.1626 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: 0.0420 S13: -0.0902 REMARK 3 S21: 0.0338 S22: -0.0344 S23: 0.0923 REMARK 3 S31: 0.2140 S32: -0.0733 S33: -0.0304 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7345 1.5038 10.5375 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.4829 REMARK 3 T33: 0.1641 T12: 0.0074 REMARK 3 T13: -0.0211 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 0.8336 L22: 1.2924 REMARK 3 L33: 3.1862 L12: -0.6305 REMARK 3 L13: 1.5520 L23: -1.2264 REMARK 3 S TENSOR REMARK 3 S11: 0.1004 S12: -0.2967 S13: -0.0858 REMARK 3 S21: 0.1680 S22: -0.1475 S23: -0.2019 REMARK 3 S31: 0.1132 S32: 0.8974 S33: 0.0924 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4014 -1.3463 -8.3227 REMARK 3 T TENSOR REMARK 3 T11: 0.2447 T22: 0.2668 REMARK 3 T33: 0.1520 T12: 0.0362 REMARK 3 T13: 0.0176 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 3.6959 L22: 7.9584 REMARK 3 L33: 4.2221 L12: 2.8866 REMARK 3 L13: 2.7525 L23: 5.6669 REMARK 3 S TENSOR REMARK 3 S11: -0.1022 S12: 0.3250 S13: -0.2858 REMARK 3 S21: -0.2652 S22: 0.3344 S23: -0.2370 REMARK 3 S31: 0.2462 S32: 0.5867 S33: -0.2307 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65197 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 3.11200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZAE REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 3 UM X 3UM X 200 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.3, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.67600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.70100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.18250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.70100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.67600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.18250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CE NZ REMARK 470 ARG A 53 CZ NH1 NH2 REMARK 470 LYS A 59 CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 134 NZ REMARK 470 LYS A 166 NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CE NZ REMARK 470 LYS A 305 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 605 O HOH A 714 2.09 REMARK 500 OG SER A 312 O HOH A 501 2.17 REMARK 500 O HOH A 517 O HOH A 736 2.17 REMARK 500 NZ LYS A 176 O HOH A 502 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -110.25 -102.08 REMARK 500 HIS A 82 58.89 -109.96 REMARK 500 LYS A 97 -42.29 -135.01 REMARK 500 THR A 123 -4.89 76.31 REMARK 500 ASN A 230 -29.15 -153.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 85.3 REMARK 620 3 ASP A 270 OD1 82.7 161.3 REMARK 620 4 HOH A 612 O 95.6 85.0 82.0 REMARK 620 5 HOH A 722 O 177.6 92.5 99.2 83.3 REMARK 620 6 HOH A 741 O 94.2 95.8 99.4 170.1 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 106.8 REMARK 620 3 ACV A 403 S17 102.4 95.0 REMARK 620 4 HOH A 741 O 118.7 109.1 121.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZAE RELATED DB: PDB DBREF 8BSX A 1 331 UNP P05326 IPNA_EMENI 1 331 SEQADV 8BSX ASP A 270 UNP P05326 HIS 270 ENGINEERED MUTATION SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE ASP ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET ACV A 403 48 HET FE A 404 2 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM FE FE (III) ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACV C14 H25 N3 O6 S FORMUL 5 FE FE 3+ FORMUL 6 HOH *413(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 6 SER A 5 LYS A 6 0 SHEET 2 AA1 6 GLY A 238 ASP A 241 1 O ASP A 241 N SER A 5 SHEET 3 AA1 6 LEU A 231 THR A 235 -1 N VAL A 233 O GLN A 240 SHEET 4 AA1 6 ILE A 269 LYS A 273 -1 O ILE A 269 N GLU A 234 SHEET 5 AA1 6 LYS A 208 GLU A 215 -1 N SER A 210 O VAL A 272 SHEET 6 AA1 6 LYS A 201 THR A 202 -1 N LYS A 201 O LEU A 209 SHEET 1 AA2 8 LYS A 11 ASP A 13 0 SHEET 2 AA2 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA2 8 TYR A 249 CYS A 253 -1 O ILE A 251 N PHE A 42 SHEET 4 AA2 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA2 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA2 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA2 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA2 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 LINK NE2 HIS A 214 FE A FE A 404 1555 1555 2.42 LINK NE2 HIS A 214 FE B FE A 404 1555 1555 1.93 LINK OD1 ASP A 216 FE A FE A 404 1555 1555 2.18 LINK OD1 ASP A 216 FE B FE A 404 1555 1555 1.96 LINK OD1 ASP A 270 FE A FE A 404 1555 1555 2.03 LINK S17BACV A 403 FE B FE A 404 1555 1555 2.49 LINK FE A FE A 404 O HOH A 612 1555 1555 2.16 LINK FE A FE A 404 O HOH A 722 1555 1555 2.16 LINK FE A FE A 404 O HOH A 741 1555 1555 2.00 LINK FE B FE A 404 O HOH A 741 1555 1555 1.85 CISPEP 1 ASP A 193 PRO A 194 0 -0.88 CRYST1 41.352 74.365 101.402 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024183 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009862 0.00000