HEADER SIGNALING PROTEIN 07-DEC-22 8BWN TITLE CRYSTAL STRUCTURE OF HUMAN TWISTED GASTRULATION PROTEIN HOMOLOG 1 TITLE 2 (TWSG1) IN COMPLEX WITH HUMAN GROWTH DIFFERENTIATION FACTOR 5 (GDF5) TITLE 3 AND CALCIUM, LONG-WAVELENGTH X-RAY DATASET (4010 EV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GDF-5,BONE MORPHOGENETIC PROTEIN 14,BMP-14,CARTILAGE-DERIVED COMPND 5 MORPHOGENETIC PROTEIN 1,CDMP-1,LIPOPOLYSACCHARIDE-ASSOCIATED PROTEIN COMPND 6 4,LAP-4,LPS-ASSOCIATED PROTEIN 4,RADOTERMIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TWISTED GASTRULATION PROTEIN HOMOLOG 1; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF5, BMP14, CDMP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: TWSG1, TSG, PSEC0250; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 18 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3216; SOURCE 19 EXPRESSION_SYSTEM_ORGAN: KIDNEY KEYWDS TWISTED GASTRULATION PROTEIN HOMOLOG 1 (TWSG1), TRANSFORMING GROWTH KEYWDS 2 FACTOR BETA (TGF-BETA) SIGNALLING PATHWAY, GROWTH DIFFERENTIATION KEYWDS 3 FACTOR 5 (GDF5), LONG-WAVELENGTH X-RAYS., SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MALINAUSKAS,A.F.RUDOLF,G.MOORE,H.EGGINGTON,H.BELNOUE-DAVIS,K.EL AUTHOR 2 OMARI,R.E.WOOLLEY,S.C.GRIFFITHS,R.DUMAN,A.WAGNER,S.J.LEEDHAM, AUTHOR 3 C.BALDOCK,H.ASHE,C.SIEBOLD REVDAT 1 19-JUN-24 8BWN 0 JRNL AUTH T.MALINAUSKAS,G.MOORE,A.F.RUDOLF,H.EGGINGTON, JRNL AUTH 2 H.L.BELNOUE-DAVIS,K.EL OMARI,S.C.GRIFFITHS,R.E.WOOLLEY, JRNL AUTH 3 R.DUMAN,A.WAGNER,S.J.LEEDHAM,C.BALDOCK,H.L.ASHE,C.SIEBOLD JRNL TITL MOLECULAR MECHANISM OF BMP SIGNAL CONTROL BY TWISTED JRNL TITL 2 GASTRULATION. JRNL REF NAT COMMUN V. 15 4976 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38862520 JRNL DOI 10.1038/S41467-024-49065-8 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 72.0 REMARK 3 NUMBER OF REFLECTIONS : 12003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.8600 - 4.0700 1.00 4108 209 0.2315 0.2768 REMARK 3 2 4.0700 - 3.2300 0.99 3939 183 0.2669 0.2761 REMARK 3 3 3.2300 - 2.8300 0.74 2914 138 0.3292 0.3303 REMARK 3 4 2.8200 - 2.5700 0.13 490 22 0.4237 0.3985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.371 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.618 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2449 REMARK 3 ANGLE : 0.411 3319 REMARK 3 CHIRALITY : 0.039 372 REMARK 3 PLANARITY : 0.003 430 REMARK 3 DIHEDRAL : 9.191 919 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 397 THROUGH 501) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6205 17.5043 13.5775 REMARK 3 T TENSOR REMARK 3 T11: 0.4429 T22: 0.4076 REMARK 3 T33: 0.4998 T12: 0.0349 REMARK 3 T13: 0.1036 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 3.9972 L22: 2.0938 REMARK 3 L33: 9.0605 L12: -0.5230 REMARK 3 L13: 5.7430 L23: -1.1901 REMARK 3 S TENSOR REMARK 3 S11: -0.4903 S12: -0.0245 S13: 0.2834 REMARK 3 S21: 0.1779 S22: 0.0895 S23: -0.2205 REMARK 3 S31: -0.5905 S32: 0.1566 S33: 0.3504 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 398 THROUGH 501) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8518 10.9591 6.1626 REMARK 3 T TENSOR REMARK 3 T11: 0.5026 T22: 0.3851 REMARK 3 T33: 0.5583 T12: -0.0764 REMARK 3 T13: 0.1448 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.3024 L22: 3.5155 REMARK 3 L33: 7.5476 L12: 0.3532 REMARK 3 L13: 3.4158 L23: 3.0229 REMARK 3 S TENSOR REMARK 3 S11: -0.1294 S12: -0.3115 S13: 0.0793 REMARK 3 S21: 0.0011 S22: -0.1790 S23: 0.3283 REMARK 3 S31: 0.0705 S32: -0.5093 S33: 0.3185 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 25 THROUGH 77) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0545 12.8132 35.1569 REMARK 3 T TENSOR REMARK 3 T11: 1.0692 T22: 1.2049 REMARK 3 T33: 0.9534 T12: 0.1234 REMARK 3 T13: 0.1927 T23: 0.3861 REMARK 3 L TENSOR REMARK 3 L11: 4.4385 L22: 1.0603 REMARK 3 L33: 7.1944 L12: 1.3705 REMARK 3 L13: 1.4452 L23: -1.2425 REMARK 3 S TENSOR REMARK 3 S11: -0.0808 S12: -2.0845 S13: -0.8769 REMARK 3 S21: 1.0819 S22: -0.1139 S23: 0.4842 REMARK 3 S31: -0.2835 S32: -1.3530 S33: -0.0854 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 25 THROUGH 78) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8026 13.5007 -14.7562 REMARK 3 T TENSOR REMARK 3 T11: 0.8602 T22: 0.8084 REMARK 3 T33: 0.8266 T12: -0.0204 REMARK 3 T13: 0.2428 T23: -0.1196 REMARK 3 L TENSOR REMARK 3 L11: 3.0513 L22: 3.7493 REMARK 3 L33: 5.8636 L12: 1.6900 REMARK 3 L13: -1.0959 L23: -1.7587 REMARK 3 S TENSOR REMARK 3 S11: 0.0668 S12: 1.5125 S13: -0.2724 REMARK 3 S21: -1.5200 S22: 0.4451 S23: -0.5634 REMARK 3 S31: -0.0476 S32: 0.7287 S33: -0.3860 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 398 through 431 or REMARK 3 resid 433 through 440 or resid 442 REMARK 3 through 469 or resid 471 through 501)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 398 through 431 or REMARK 3 resid 433 through 440 or resid 442 REMARK 3 through 469 or resid 471 through 501)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 25 through 48 or REMARK 3 resid 53 through 77)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and resid 25 through 77) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 3.09187 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.0.5 (20211020), XDS REMARK 200 JAN 10, 2022 (BUILT 20220110) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.567 REMARK 200 RESOLUTION RANGE LOW (A) : 65.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 13.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 1.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% W/V PEG 1000, 12.5% W/V PEG REMARK 280 3350, 12.5% V/V MPD, 100 MM CACL2, 0.1 M MOPS/HEPES-NA PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.78700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.84050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.58900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.84050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.78700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.58900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 381 REMARK 465 ALA A 382 REMARK 465 PRO A 383 REMARK 465 LEU A 384 REMARK 465 ALA A 385 REMARK 465 THR A 386 REMARK 465 ARG A 387 REMARK 465 GLN A 388 REMARK 465 GLY A 389 REMARK 465 LYS A 390 REMARK 465 ARG A 391 REMARK 465 PRO A 392 REMARK 465 SER A 393 REMARK 465 LYS A 394 REMARK 465 ASN A 395 REMARK 465 LEU A 396 REMARK 465 MET B 381 REMARK 465 ALA B 382 REMARK 465 PRO B 383 REMARK 465 LEU B 384 REMARK 465 ALA B 385 REMARK 465 THR B 386 REMARK 465 ARG B 387 REMARK 465 GLN B 388 REMARK 465 GLY B 389 REMARK 465 LYS B 390 REMARK 465 ARG B 391 REMARK 465 PRO B 392 REMARK 465 SER B 393 REMARK 465 LYS B 394 REMARK 465 ASN B 395 REMARK 465 LEU B 396 REMARK 465 LYS B 397 REMARK 465 GLU C 23 REMARK 465 THR C 24 REMARK 465 GLU C 50 REMARK 465 GLY C 51 REMARK 465 ASN C 52 REMARK 465 ASN C 78 REMARK 465 PRO C 79 REMARK 465 ARG C 80 REMARK 465 ASN C 81 REMARK 465 TYR C 82 REMARK 465 SER C 83 REMARK 465 GLY C 84 REMARK 465 THR C 85 REMARK 465 LEU C 86 REMARK 465 GLU C 87 REMARK 465 VAL C 88 REMARK 465 LEU C 89 REMARK 465 PHE C 90 REMARK 465 GLN C 91 REMARK 465 GLU D 23 REMARK 465 THR D 24 REMARK 465 GLY D 49 REMARK 465 GLU D 50 REMARK 465 GLY D 51 REMARK 465 ASN D 52 REMARK 465 PRO D 79 REMARK 465 ARG D 80 REMARK 465 ASN D 81 REMARK 465 TYR D 82 REMARK 465 SER D 83 REMARK 465 GLY D 84 REMARK 465 THR D 85 REMARK 465 LEU D 86 REMARK 465 GLU D 87 REMARK 465 VAL D 88 REMARK 465 LEU D 89 REMARK 465 PHE D 90 REMARK 465 GLN D 91 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 427 169.36 60.76 REMARK 500 ASP A 480 -179.60 -69.57 REMARK 500 PHE B 427 170.06 60.71 REMARK 500 ASP B 480 -179.97 -69.71 REMARK 500 SER C 54 -62.96 -108.15 REMARK 500 SER D 54 -62.86 -108.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 413 O REMARK 620 2 ASP A 416 OD2 106.2 REMARK 620 3 HOH A 709 O 173.4 67.2 REMARK 620 4 HOH A 715 O 78.8 112.2 103.2 REMARK 620 5 HOH A 721 O 115.9 135.6 70.5 65.6 REMARK 620 6 HOH C 101 O 85.9 107.6 96.1 139.9 89.2 REMARK 620 7 HOH C 102 O 109.9 60.3 67.5 169.4 113.8 49.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 719 O REMARK 620 2 GLY B 413 O 152.0 REMARK 620 3 ASP B 416 OD2 104.1 95.1 REMARK 620 4 HOH B 715 O 58.5 109.5 73.6 REMARK 620 5 HOH D 202 O 125.5 80.5 67.7 140.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA D 65 O REMARK 620 2 GLU D 69 OE1 62.8 REMARK 620 3 GLU D 69 OE2 103.7 43.8 REMARK 620 4 HOH D 205 O 84.1 92.9 81.8 REMARK 620 N 1 2 3 DBREF 8BWN A 382 501 UNP P43026 GDF5_HUMAN 382 501 DBREF 8BWN B 382 501 UNP P43026 GDF5_HUMAN 382 501 DBREF 8BWN C 26 83 UNP Q9GZX9 TWSG1_HUMAN 26 83 DBREF 8BWN D 26 83 UNP Q9GZX9 TWSG1_HUMAN 26 83 SEQADV 8BWN MET A 381 UNP P43026 INITIATING METHIONINE SEQADV 8BWN MET B 381 UNP P43026 INITIATING METHIONINE SEQADV 8BWN GLU C 23 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN THR C 24 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN GLY C 25 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN GLY C 84 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN THR C 85 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN LEU C 86 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN GLU C 87 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN VAL C 88 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN LEU C 89 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN PHE C 90 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN GLN C 91 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN GLU D 23 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN THR D 24 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN GLY D 25 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN GLY D 84 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN THR D 85 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN LEU D 86 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN GLU D 87 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN VAL D 88 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN LEU D 89 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN PHE D 90 UNP Q9GZX9 EXPRESSION TAG SEQADV 8BWN GLN D 91 UNP Q9GZX9 EXPRESSION TAG SEQRES 1 A 121 MET ALA PRO LEU ALA THR ARG GLN GLY LYS ARG PRO SER SEQRES 2 A 121 LYS ASN LEU LYS ALA ARG CYS SER ARG LYS ALA LEU HIS SEQRES 3 A 121 VAL ASN PHE LYS ASP MET GLY TRP ASP ASP TRP ILE ILE SEQRES 4 A 121 ALA PRO LEU GLU TYR GLU ALA PHE HIS CYS GLU GLY LEU SEQRES 5 A 121 CYS GLU PHE PRO LEU ARG SER HIS LEU GLU PRO THR ASN SEQRES 6 A 121 HIS ALA VAL ILE GLN THR LEU MET ASN SER MET ASP PRO SEQRES 7 A 121 GLU SER THR PRO PRO THR CYS CYS VAL PRO THR ARG LEU SEQRES 8 A 121 SER PRO ILE SER ILE LEU PHE ILE ASP SER ALA ASN ASN SEQRES 9 A 121 VAL VAL TYR LYS GLN TYR GLU ASP MET VAL VAL GLU SER SEQRES 10 A 121 CYS GLY CYS ARG SEQRES 1 B 121 MET ALA PRO LEU ALA THR ARG GLN GLY LYS ARG PRO SER SEQRES 2 B 121 LYS ASN LEU LYS ALA ARG CYS SER ARG LYS ALA LEU HIS SEQRES 3 B 121 VAL ASN PHE LYS ASP MET GLY TRP ASP ASP TRP ILE ILE SEQRES 4 B 121 ALA PRO LEU GLU TYR GLU ALA PHE HIS CYS GLU GLY LEU SEQRES 5 B 121 CYS GLU PHE PRO LEU ARG SER HIS LEU GLU PRO THR ASN SEQRES 6 B 121 HIS ALA VAL ILE GLN THR LEU MET ASN SER MET ASP PRO SEQRES 7 B 121 GLU SER THR PRO PRO THR CYS CYS VAL PRO THR ARG LEU SEQRES 8 B 121 SER PRO ILE SER ILE LEU PHE ILE ASP SER ALA ASN ASN SEQRES 9 B 121 VAL VAL TYR LYS GLN TYR GLU ASP MET VAL VAL GLU SER SEQRES 10 B 121 CYS GLY CYS ARG SEQRES 1 C 69 GLU THR GLY CYS ASN LYS ALA LEU CYS ALA SER ASP VAL SEQRES 2 C 69 SER LYS CYS LEU ILE GLN GLU LEU CYS GLN CYS ARG PRO SEQRES 3 C 69 GLY GLU GLY ASN CYS SER CYS CYS LYS GLU CYS MET LEU SEQRES 4 C 69 CYS LEU GLY ALA LEU TRP ASP GLU CYS CYS ASP CYS VAL SEQRES 5 C 69 GLY MET CYS ASN PRO ARG ASN TYR SER GLY THR LEU GLU SEQRES 6 C 69 VAL LEU PHE GLN SEQRES 1 D 69 GLU THR GLY CYS ASN LYS ALA LEU CYS ALA SER ASP VAL SEQRES 2 D 69 SER LYS CYS LEU ILE GLN GLU LEU CYS GLN CYS ARG PRO SEQRES 3 D 69 GLY GLU GLY ASN CYS SER CYS CYS LYS GLU CYS MET LEU SEQRES 4 D 69 CYS LEU GLY ALA LEU TRP ASP GLU CYS CYS ASP CYS VAL SEQRES 5 D 69 GLY MET CYS ASN PRO ARG ASN TYR SER GLY THR LEU GLU SEQRES 6 D 69 VAL LEU PHE GLN HET CA A 601 1 HET CA B 601 1 HET CA D 101 1 HETNAM CA CALCIUM ION FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *45(H2 O) HELIX 1 AA1 LYS A 410 GLY A 413 5 4 HELIX 2 AA2 ARG A 438 GLU A 442 5 5 HELIX 3 AA3 THR A 444 ASP A 457 1 14 HELIX 4 AA4 LYS B 410 GLY B 413 5 4 HELIX 5 AA5 ARG B 438 GLU B 442 5 5 HELIX 6 AA6 THR B 444 ASP B 457 1 14 HELIX 7 AA7 ASN C 27 GLN C 41 1 15 HELIX 8 AA8 CYS C 55 GLY C 64 1 10 HELIX 9 AA9 LEU C 66 CYS C 71 1 6 HELIX 10 AB1 ASP C 72 GLY C 75 5 4 HELIX 11 AB2 ASN D 27 GLN D 41 1 15 HELIX 12 AB3 CYS D 55 GLY D 64 1 10 HELIX 13 AB4 LEU D 66 CYS D 71 1 6 HELIX 14 AB5 ASP D 72 VAL D 74 5 3 SHEET 1 AA1 2 SER A 401 LYS A 403 0 SHEET 2 AA1 2 HIS A 428 GLU A 430 -1 O HIS A 428 N LYS A 403 SHEET 1 AA2 2 HIS A 406 ASN A 408 0 SHEET 2 AA2 2 GLU A 423 GLU A 425 -1 O TYR A 424 N VAL A 407 SHEET 1 AA3 3 ILE A 418 ALA A 420 0 SHEET 2 AA3 3 CYS A 466 ILE A 479 -1 O LEU A 477 N ALA A 420 SHEET 3 AA3 3 VAL A 485 CYS A 500 -1 O GLU A 496 N ARG A 470 SHEET 1 AA4 2 SER B 401 LYS B 403 0 SHEET 2 AA4 2 HIS B 428 GLU B 430 -1 O HIS B 428 N LYS B 403 SHEET 1 AA5 2 HIS B 406 ASN B 408 0 SHEET 2 AA5 2 GLU B 423 GLU B 425 -1 O TYR B 424 N VAL B 407 SHEET 1 AA6 3 ILE B 418 ALA B 420 0 SHEET 2 AA6 3 CYS B 466 ILE B 479 -1 O LEU B 477 N ALA B 420 SHEET 3 AA6 3 VAL B 485 CYS B 500 -1 O LYS B 488 N ILE B 476 SSBOND 1 CYS A 400 CYS A 466 1555 1555 2.03 SSBOND 2 CYS A 429 CYS A 498 1555 1555 2.04 SSBOND 3 CYS A 433 CYS A 500 1555 1555 2.04 SSBOND 4 CYS A 465 CYS B 465 1555 1555 2.03 SSBOND 5 CYS B 400 CYS B 466 1555 1555 2.03 SSBOND 6 CYS B 429 CYS B 498 1555 1555 2.03 SSBOND 7 CYS B 433 CYS B 500 1555 1555 2.03 SSBOND 8 CYS C 26 CYS C 73 1555 1555 2.03 SSBOND 9 CYS C 31 CYS C 70 1555 1555 2.03 SSBOND 10 CYS C 38 CYS C 62 1555 1555 2.03 SSBOND 11 CYS C 44 CYS C 59 1555 1555 2.03 SSBOND 12 CYS C 46 CYS C 55 1555 1555 2.03 SSBOND 13 CYS C 53 CYS C 56 1555 1555 2.03 SSBOND 14 CYS C 71 CYS C 77 1555 1555 2.03 SSBOND 15 CYS D 26 CYS D 73 1555 1555 2.03 SSBOND 16 CYS D 31 CYS D 70 1555 1555 2.03 SSBOND 17 CYS D 38 CYS D 62 1555 1555 2.03 SSBOND 18 CYS D 44 CYS D 59 1555 1555 2.03 SSBOND 19 CYS D 46 CYS D 55 1555 1555 2.03 SSBOND 20 CYS D 53 CYS D 56 1555 1555 2.03 SSBOND 21 CYS D 71 CYS D 77 1555 1555 2.04 LINK O GLY A 413 CA CA A 601 1555 1555 2.51 LINK OD2 ASP A 416 CA CA A 601 1555 1555 2.54 LINK CA CA A 601 O HOH A 709 1555 1555 2.60 LINK CA CA A 601 O HOH A 715 1555 1555 2.66 LINK CA CA A 601 O HOH A 721 1555 1555 2.46 LINK CA CA A 601 O HOH C 101 1555 1555 2.49 LINK CA CA A 601 O HOH C 102 1555 1555 2.93 LINK O HOH A 719 CA CA B 601 4455 1555 2.80 LINK O GLY B 413 CA CA B 601 1555 1555 2.74 LINK OD2 ASP B 416 CA CA B 601 1555 1555 2.65 LINK CA CA B 601 O HOH B 715 1555 1555 2.84 LINK CA CA B 601 O HOH D 202 1555 1555 2.71 LINK O ALA D 65 CA CA D 101 1555 1555 2.68 LINK OE1 GLU D 69 CA CA D 101 1555 1555 3.14 LINK OE2 GLU D 69 CA CA D 101 1555 1555 2.56 LINK CA CA D 101 O HOH D 205 1555 1555 2.53 CISPEP 1 ALA A 420 PRO A 421 0 -2.09 CISPEP 2 PHE A 435 PRO A 436 0 -2.61 CISPEP 3 ALA B 420 PRO B 421 0 -0.62 CISPEP 4 PHE B 435 PRO B 436 0 -4.20 CRYST1 57.574 89.178 97.681 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010237 0.00000 MTRIX1 1 -0.653987 -0.756250 0.019662 23.31661 1 MTRIX2 1 -0.756343 0.653087 -0.037711 11.27795 1 MTRIX3 1 0.015678 -0.039534 -0.999095 20.43300 1 MTRIX1 2 -0.654249 -0.753940 0.059440 22.26958 1 MTRIX2 2 -0.756188 0.653365 -0.035970 10.88472 1 MTRIX3 2 -0.011717 -0.068481 -0.997584 21.40169 1