HEADER FLUORESCENT PROTEIN 09-DEC-22 8BXT TITLE STRUCTURE OF STAYGOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAYGOLD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FLUOROPHORE (CR2) IS FORMED FROM G57Y58G59 RESIDUES OF COMPND 6 THE PEPTIDE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTAEIS UCHIDAE; SOURCE 3 ORGANISM_TAXID: 1254443; SOURCE 4 GENE: CU17S; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIMER, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.IVORRA-MOLLA,D.AKHULI,A.CROW REVDAT 4 20-DEC-23 8BXT 1 JRNL REVDAT 3 15-NOV-23 8BXT 1 REMARK REVDAT 2 04-OCT-23 8BXT 1 REMARK REVDAT 1 19-JUL-23 8BXT 0 JRNL AUTH E.IVORRA-MOLLA,D.AKHULI,M.B.L.MCANDREW,W.SCOTT,L.KUMAR, JRNL AUTH 2 S.PALANI,M.MISHIMA,A.CROW,M.K.BALASUBRAMANIAN JRNL TITL A MONOMERIC STAYGOLD FLUORESCENT PROTEIN. JRNL REF NAT.BIOTECHNOL. 2023 JRNL REFN ISSN 1087-0156 JRNL PMID 38081970 JRNL DOI 10.1038/S41587-023-02018-W REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.IVORRA-MOLLA,D.AKHULI,M.MCANDREW,W.SCOTT,L.KUMAR,S.PALANI, REMARK 1 AUTH 2 M.MISHIMA,A.CROW,M.BALASUBRAMANIAN REMARK 1 TITL A MONOMERIC STAYGOLD FLUORESCENT PROTEIN REMARK 1 REF PREPRINTS 2023 REMARK 1 REFN ESSN 2310-287X REMARK 1 DOI 10.21203/RS.3.RS-2684100/V1 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 78802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.982 REMARK 3 FREE R VALUE TEST SET COUNT : 3926 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 326 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36700 REMARK 3 B22 (A**2) : 0.36700 REMARK 3 B33 (A**2) : -1.19200 REMARK 3 B12 (A**2) : 0.18400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.616 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3928 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3393 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5329 ; 1.520 ; 1.681 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8017 ; 0.539 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 7.488 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ; 9.024 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;13.639 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4538 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 770 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 642 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 80 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1660 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 294 ; 0.199 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1881 ; 1.507 ; 1.524 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1881 ; 1.507 ; 1.524 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2402 ; 2.270 ; 2.286 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2403 ; 2.270 ; 2.286 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2047 ; 2.625 ; 1.780 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2048 ; 2.625 ; 1.781 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2927 ; 3.980 ; 2.543 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2928 ; 3.979 ; 2.544 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 55 1 REMARK 3 1 A 2 A 55 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 60 A 217 1 REMARK 3 2 A 60 A 217 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8BXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78841 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 66.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.51100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.02200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.26650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.77750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.75550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 573 O HOH B 555 1.57 REMARK 500 O HOH B 477 O HOH B 530 1.78 REMARK 500 OE2 GLU A 80 O HOH A 401 1.80 REMARK 500 ND1 HIS B 169 O HOH B 401 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 46 33.30 -88.69 REMARK 500 ASP A 93 -158.24 -151.93 REMARK 500 PRO B 46 31.03 -86.79 REMARK 500 ASP B 93 -157.97 -155.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 86 0.08 SIDE CHAIN REMARK 500 ARG B 86 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 164 10.46 REMARK 500 LYS A 164 -10.86 REMARK 500 LYS B 164 10.53 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8BXT A 1 217 UNP A0A8S0GSD4_9CNID DBREF2 8BXT A A0A8S0GSD4 1 217 DBREF1 8BXT B 1 217 UNP A0A8S0GSD4_9CNID DBREF2 8BXT B A0A8S0GSD4 1 217 SEQADV 8BXT CR2 A 58 UNP A0A8S0GSD GLY 57 CHROMOPHORE SEQADV 8BXT CR2 A 58 UNP A0A8S0GSD TYR 58 CHROMOPHORE SEQADV 8BXT CR2 A 58 UNP A0A8S0GSD GLY 59 CHROMOPHORE SEQADV 8BXT ALA A 168 UNP A0A8S0GSD VAL 168 ENGINEERED MUTATION SEQADV 8BXT CR2 B 58 UNP A0A8S0GSD GLY 57 CHROMOPHORE SEQADV 8BXT CR2 B 58 UNP A0A8S0GSD TYR 58 CHROMOPHORE SEQADV 8BXT CR2 B 58 UNP A0A8S0GSD GLY 59 CHROMOPHORE SEQADV 8BXT ALA B 168 UNP A0A8S0GSD VAL 168 ENGINEERED MUTATION SEQRES 1 A 215 MET ALA SER THR PRO PHE LYS PHE GLN LEU LYS GLY THR SEQRES 2 A 215 ILE ASN GLY LYS SER PHE THR VAL GLU GLY GLU GLY GLU SEQRES 3 A 215 GLY ASN SER HIS GLU GLY SER HIS LYS GLY LYS TYR VAL SEQRES 4 A 215 CYS THR SER GLY LYS LEU PRO MET SER TRP ALA ALA LEU SEQRES 5 A 215 GLY THR SER PHE CR2 MET LYS TYR TYR THR LYS TYR PRO SEQRES 6 A 215 SER GLY LEU LYS ASN TRP PHE HIS GLU VAL MET PRO GLU SEQRES 7 A 215 GLY PHE THR TYR ASP ARG HIS ILE GLN TYR LYS GLY ASP SEQRES 8 A 215 GLY SER ILE HIS ALA LYS HIS GLN HIS PHE MET LYS ASN SEQRES 9 A 215 GLY THR TYR HIS ASN ILE VAL GLU PHE THR GLY GLN ASP SEQRES 10 A 215 PHE LYS GLU ASN SER PRO VAL LEU THR GLY ASP MET ASN SEQRES 11 A 215 VAL SER LEU PRO ASN GLU VAL GLN HIS ILE PRO ARG ASP SEQRES 12 A 215 ASP GLY VAL GLU CYS PRO VAL THR LEU LEU TYR PRO LEU SEQRES 13 A 215 LEU SER ASP LYS SER LYS CYS VAL GLU ALA HIS GLN ASN SEQRES 14 A 215 THR ILE CYS LYS PRO LEU HIS ASN GLN PRO ALA PRO ASP SEQRES 15 A 215 VAL PRO TYR HIS TRP ILE ARG LYS GLN TYR THR GLN SER SEQRES 16 A 215 LYS ASP ASP THR GLU GLU ARG ASP HIS ILE CYS GLN SER SEQRES 17 A 215 GLU THR LEU GLU ALA HIS LEU SEQRES 1 B 215 MET ALA SER THR PRO PHE LYS PHE GLN LEU LYS GLY THR SEQRES 2 B 215 ILE ASN GLY LYS SER PHE THR VAL GLU GLY GLU GLY GLU SEQRES 3 B 215 GLY ASN SER HIS GLU GLY SER HIS LYS GLY LYS TYR VAL SEQRES 4 B 215 CYS THR SER GLY LYS LEU PRO MET SER TRP ALA ALA LEU SEQRES 5 B 215 GLY THR SER PHE CR2 MET LYS TYR TYR THR LYS TYR PRO SEQRES 6 B 215 SER GLY LEU LYS ASN TRP PHE HIS GLU VAL MET PRO GLU SEQRES 7 B 215 GLY PHE THR TYR ASP ARG HIS ILE GLN TYR LYS GLY ASP SEQRES 8 B 215 GLY SER ILE HIS ALA LYS HIS GLN HIS PHE MET LYS ASN SEQRES 9 B 215 GLY THR TYR HIS ASN ILE VAL GLU PHE THR GLY GLN ASP SEQRES 10 B 215 PHE LYS GLU ASN SER PRO VAL LEU THR GLY ASP MET ASN SEQRES 11 B 215 VAL SER LEU PRO ASN GLU VAL GLN HIS ILE PRO ARG ASP SEQRES 12 B 215 ASP GLY VAL GLU CYS PRO VAL THR LEU LEU TYR PRO LEU SEQRES 13 B 215 LEU SER ASP LYS SER LYS CYS VAL GLU ALA HIS GLN ASN SEQRES 14 B 215 THR ILE CYS LYS PRO LEU HIS ASN GLN PRO ALA PRO ASP SEQRES 15 B 215 VAL PRO TYR HIS TRP ILE ARG LYS GLN TYR THR GLN SER SEQRES 16 B 215 LYS ASP ASP THR GLU GLU ARG ASP HIS ILE CYS GLN SER SEQRES 17 B 215 GLU THR LEU GLU ALA HIS LEU MODRES 8BXT CR2 A 58 GLY CHROMOPHORE MODRES 8BXT CR2 A 58 TYR CHROMOPHORE MODRES 8BXT CR2 A 58 GLY CHROMOPHORE MODRES 8BXT CR2 B 58 GLY CHROMOPHORE MODRES 8BXT CR2 B 58 TYR CHROMOPHORE MODRES 8BXT CR2 B 58 GLY CHROMOPHORE HET CR2 A 58 19 HET CR2 B 58 19 HET CL A 301 1 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET CL B 301 1 HET EDO B 302 4 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CR2 2(C13 H13 N3 O4) FORMUL 3 CL 2(CL 1-) FORMUL 4 EDO 12(C2 H6 O2) FORMUL 17 HOH *375(H2 O) HELIX 1 AA1 TRP A 49 GLY A 53 5 5 HELIX 2 AA2 MET A 60 THR A 64 5 5 HELIX 3 AA3 ASN A 72 VAL A 77 1 6 HELIX 4 AA4 SER A 124 GLY A 129 1 6 HELIX 5 AA5 TRP B 49 GLY B 53 5 5 HELIX 6 AA6 MET B 60 THR B 64 5 5 HELIX 7 AA7 ASN B 72 VAL B 77 1 6 HELIX 8 AA8 SER B 124 GLY B 129 1 6 SHEET 1 AA112 THR A 4 ILE A 14 0 SHEET 2 AA112 LYS A 17 ASN A 28 -1 O PHE A 19 N GLY A 12 SHEET 3 AA112 SER A 33 CYS A 40 -1 O VAL A 39 N GLU A 22 SHEET 4 AA112 HIS A 206 HIS A 216 -1 O ILE A 207 N TYR A 38 SHEET 5 AA112 HIS A 188 SER A 197 -1 N SER A 197 O CYS A 208 SHEET 6 AA112 ASN A 137 ARG A 144 -1 N HIS A 141 O HIS A 188 SHEET 7 AA112 GLY A 147 PRO A 157 -1 O GLU A 149 N ILE A 142 SHEET 8 AA112 CYS A 165 PRO A 176 -1 O ALA A 168 N LEU A 154 SHEET 9 AA112 PHE A 82 TYR A 90 -1 N HIS A 87 O ASN A 171 SHEET 10 AA112 SER A 95 LYS A 105 -1 O ALA A 98 N ARG A 86 SHEET 11 AA112 THR A 108 GLN A 118 -1 O HIS A 110 N PHE A 103 SHEET 12 AA112 THR A 4 ILE A 14 1 N THR A 13 O GLY A 117 SHEET 1 AA212 THR B 4 ILE B 14 0 SHEET 2 AA212 LYS B 17 ASN B 28 -1 O PHE B 19 N GLY B 12 SHEET 3 AA212 SER B 33 CYS B 40 -1 O VAL B 39 N GLU B 22 SHEET 4 AA212 HIS B 206 HIS B 216 -1 O ILE B 207 N TYR B 38 SHEET 5 AA212 HIS B 188 SER B 197 -1 N SER B 197 O CYS B 208 SHEET 6 AA212 ASN B 137 ARG B 144 -1 N ASN B 137 O LYS B 192 SHEET 7 AA212 GLY B 147 PRO B 157 -1 O GLU B 149 N ILE B 142 SHEET 8 AA212 CYS B 165 PRO B 176 -1 O CYS B 174 N VAL B 148 SHEET 9 AA212 PHE B 82 TYR B 90 -1 N GLN B 89 O HIS B 169 SHEET 10 AA212 SER B 95 LYS B 105 -1 O ALA B 98 N ARG B 86 SHEET 11 AA212 THR B 108 GLN B 118 -1 O HIS B 110 N PHE B 103 SHEET 12 AA212 THR B 4 ILE B 14 1 N GLN B 9 O VAL B 113 LINK C PHE A 56 N1 CR2 A 58 1555 1555 1.35 LINK C3 CR2 A 58 N MET A 60 1555 1555 1.42 LINK C PHE B 56 N1 CR2 B 58 1555 1555 1.38 LINK C3 CR2 B 58 N MET B 60 1555 1555 1.42 CISPEP 1 MET A 78 PRO A 79 0 0.98 CISPEP 2 MET B 78 PRO B 79 0 0.58 CRYST1 133.721 133.721 58.533 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007478 0.004318 0.000000 0.00000 SCALE2 0.000000 0.008635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017084 0.00000