HEADER TRANSFERASE 12-DEC-22 8BYH TITLE CRYSTAL STRUCTURE OF TRMD DOMAIN FROM CALDITERRIVIBRIO NITROREDUCENS TITLE 2 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDITERRIVIBRIO NITROREDUCENS DSM 19672; SOURCE 3 ORGANISM_TAXID: 768670; SOURCE 4 GENE: TRMD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KNOTTED-PROTEIN, TRNA, TRMD, METHYL TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KLUZA,I.LEWANDOWSKA,J.SULKOWSKA REVDAT 2 07-FEB-24 8BYH 1 REMARK REVDAT 1 11-JAN-23 8BYH 0 JRNL AUTH J.SULKOWSKA JRNL TITL ARE THERE DOUBLE KNOTS IN PROTEINS? PREDICTION AND IN VITRO JRNL TITL 2 VERIFICATION BASED ON TRMD-TM1570 FUSION FROM C. JRNL TITL 3 NITROREDUCENS. TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 40820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8300 - 5.3900 1.00 2855 151 0.1741 0.2077 REMARK 3 2 5.3900 - 4.2800 1.00 2681 141 0.1229 0.1453 REMARK 3 3 4.2800 - 3.7400 1.00 2647 140 0.1324 0.1610 REMARK 3 4 3.7400 - 3.4000 1.00 2628 138 0.1487 0.1858 REMARK 3 5 3.4000 - 3.1500 1.00 2603 137 0.1677 0.2290 REMARK 3 6 3.1500 - 2.9700 1.00 2607 137 0.1748 0.2203 REMARK 3 7 2.9700 - 2.8200 1.00 2601 137 0.1808 0.2583 REMARK 3 8 2.8200 - 2.7000 1.00 2575 135 0.1740 0.1983 REMARK 3 9 2.7000 - 2.5900 1.00 2579 134 0.1786 0.2107 REMARK 3 10 2.5900 - 2.5000 1.00 2556 135 0.1808 0.2670 REMARK 3 11 2.5000 - 2.4300 1.00 2572 135 0.1866 0.2835 REMARK 3 12 2.4300 - 2.3600 1.00 2556 135 0.2035 0.2282 REMARK 3 13 2.3600 - 2.2900 0.98 2517 132 0.2221 0.3021 REMARK 3 14 2.2900 - 2.2400 0.96 2444 129 0.2604 0.3111 REMARK 3 15 2.2400 - 2.1900 0.93 2359 124 0.2685 0.3254 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.248 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.824 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4019 REMARK 3 ANGLE : 0.857 5429 REMARK 3 CHIRALITY : 0.053 601 REMARK 3 PLANARITY : 0.005 694 REMARK 3 DIHEDRAL : 17.248 1529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1160 24.0305 -8.1535 REMARK 3 T TENSOR REMARK 3 T11: 0.2449 T22: 0.1946 REMARK 3 T33: 0.2508 T12: 0.0336 REMARK 3 T13: 0.0004 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.8047 L22: 1.1940 REMARK 3 L33: 2.9483 L12: -0.2210 REMARK 3 L13: -0.7023 L23: 0.4229 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: -0.0503 S13: 0.1524 REMARK 3 S21: 0.0249 S22: 0.0033 S23: 0.0694 REMARK 3 S31: -0.2349 S32: -0.1741 S33: 0.0428 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6895 12.9124 -29.3695 REMARK 3 T TENSOR REMARK 3 T11: 0.4366 T22: 0.5587 REMARK 3 T33: 0.3137 T12: 0.0000 REMARK 3 T13: 0.0021 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 3.5666 L22: 8.8317 REMARK 3 L33: 0.6379 L12: -5.5741 REMARK 3 L13: 1.4811 L23: -2.4024 REMARK 3 S TENSOR REMARK 3 S11: 0.0812 S12: 0.4482 S13: -0.1246 REMARK 3 S21: -1.2442 S22: 0.1225 S23: 0.1277 REMARK 3 S31: 0.0745 S32: -0.4582 S33: -0.1776 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9070 0.1676 -33.1691 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.1982 REMARK 3 T33: 0.2329 T12: 0.0537 REMARK 3 T13: 0.0104 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 6.8002 L22: 5.2381 REMARK 3 L33: 2.1020 L12: 5.2554 REMARK 3 L13: -1.2922 L23: -1.4063 REMARK 3 S TENSOR REMARK 3 S11: -0.1008 S12: 0.1855 S13: -0.1765 REMARK 3 S21: -0.1846 S22: 0.1166 S23: -0.0165 REMARK 3 S31: 0.1682 S32: -0.0101 S33: 0.0221 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0297 18.5483 -17.7662 REMARK 3 T TENSOR REMARK 3 T11: 0.2227 T22: 0.2102 REMARK 3 T33: 0.2469 T12: -0.0118 REMARK 3 T13: -0.0039 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.1599 L22: 1.3561 REMARK 3 L33: 3.1499 L12: -0.0672 REMARK 3 L13: -0.5921 L23: -0.0385 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.0338 S13: 0.1111 REMARK 3 S21: 0.0429 S22: 0.0005 S23: -0.1199 REMARK 3 S31: -0.1808 S32: 0.2496 S33: 0.0403 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2762 13.9676 4.6277 REMARK 3 T TENSOR REMARK 3 T11: 0.6275 T22: 0.6411 REMARK 3 T33: 0.3846 T12: 0.0763 REMARK 3 T13: 0.0324 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 5.5661 L22: 6.4087 REMARK 3 L33: 0.4029 L12: 5.5939 REMARK 3 L13: 0.9659 L23: 0.5390 REMARK 3 S TENSOR REMARK 3 S11: 0.5896 S12: -1.2138 S13: 0.2115 REMARK 3 S21: 1.6446 S22: -0.4566 S23: 0.2924 REMARK 3 S31: -0.1603 S32: -0.3032 S33: -0.1094 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8448 7.0296 8.9892 REMARK 3 T TENSOR REMARK 3 T11: 0.3937 T22: 0.3456 REMARK 3 T33: 0.3506 T12: 0.0100 REMARK 3 T13: 0.1058 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 2.0402 L22: 4.7367 REMARK 3 L33: 5.2792 L12: -2.1987 REMARK 3 L13: -0.9512 L23: 1.1058 REMARK 3 S TENSOR REMARK 3 S11: -0.4506 S12: -0.3316 S13: -0.4831 REMARK 3 S21: 0.6522 S22: 0.1056 S23: 0.2972 REMARK 3 S31: 0.9458 S32: 0.2172 S33: 0.3285 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.465220 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 45.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.750 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.67 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8B1N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SAMPLE: 4 MG/ML TRMD IN 50 MM REMARK 280 HEPES BUFFER PH 7.4, 300 MM NACL, 5% GLYCEROL, 10 MM SAM, 20 MM REMARK 280 MGCL2. RESERVOIR SOLUTION: 0.2 M SODIUM THIOCYANATE, 20% W/V PEG REMARK 280 3350 (JCSG+ SCREEN 1-14)., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.35500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.69500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.03250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.69500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.67750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.69500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.69500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 158.03250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.69500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.69500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.67750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.35500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 403 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLU A 162 REMARK 465 ASN A 163 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 ASP A 161 CG OD1 OD2 REMARK 470 ASN A 166 CG OD1 ND2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 ASP B 161 CG OD1 OD2 REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 HIS B 200 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 230 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 234 CG CD OE1 NE2 REMARK 470 TRP B 237 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 237 CZ3 CH2 REMARK 470 THR B 240 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 114 -133.63 55.94 REMARK 500 PHE A 170 -41.96 68.50 REMARK 500 TYR B 114 -135.97 58.67 REMARK 500 PHE B 170 -44.63 72.50 REMARK 500 SER B 238 46.79 -76.62 REMARK 500 LEU B 239 -51.34 -152.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8B1N RELATED DB: PDB REMARK 900 SAME CITATION DBREF 8BYH A 1 240 UNP E4THH1 E4THH1_CALNY 1 240 DBREF 8BYH B 1 240 UNP E4THH1 E4THH1_CALNY 1 240 SEQADV 8BYH GLY A -2 UNP E4THH1 EXPRESSION TAG SEQADV 8BYH PRO A -1 UNP E4THH1 EXPRESSION TAG SEQADV 8BYH HIS A 0 UNP E4THH1 EXPRESSION TAG SEQADV 8BYH GLY B -2 UNP E4THH1 EXPRESSION TAG SEQADV 8BYH PRO B -1 UNP E4THH1 EXPRESSION TAG SEQADV 8BYH HIS B 0 UNP E4THH1 EXPRESSION TAG SEQRES 1 A 243 GLY PRO HIS MET LYS ARG TYR ASN VAL ILE THR ILE PHE SEQRES 2 A 243 PRO GLU MET ILE ASN GLU ILE PHE LYS TYR GLY VAL LEU SEQRES 3 A 243 SER LYS GLY ILE ASP ILE GLY LEU PHE ARG VAL ASN PRO SEQRES 4 A 243 ILE ASN LEU ARG ASP TYR THR GLU ASP LYS HIS LYS THR SEQRES 5 A 243 VAL ASP ASP TYR GLN TYR GLY GLY GLY HIS GLY LEU VAL SEQRES 6 A 243 MET LYS PRO GLU PRO ILE TYR LYS ALA ILE ALA ASP LEU SEQRES 7 A 243 LYS SER LYS LYS ASP THR HIS VAL VAL PHE LEU ASP PRO SEQRES 8 A 243 ARG GLY GLU GLN PHE THR GLN LYS THR ALA GLU ARG LEU SEQRES 9 A 243 TYR ASN TYR ASP ASP ILE THR PHE VAL CYS GLY ARG TYR SEQRES 10 A 243 GLU GLY ILE ASP ASP ARG VAL ARG GLU LEU MET ALA ASP SEQRES 11 A 243 GLU MET ILE SER ILE GLY ASP PHE VAL ILE THR GLY GLY SEQRES 12 A 243 GLU LEU ALA ALA VAL THR ILE ILE ASP ALA VAL ALA ARG SEQRES 13 A 243 LEU ILE PRO GLY VAL LEU GLY ASP GLU ASN SER PRO ASN SEQRES 14 A 243 GLU GLU SER PHE THR THR GLY LEU LEU GLU TYR PRO HIS SEQRES 15 A 243 PHE THR ARG PRO ALA GLU PHE MET GLY LYS LYS VAL PRO SEQRES 16 A 243 GLU VAL LEU ILE SER GLY ASN HIS GLU GLU ILE ARG ARG SEQRES 17 A 243 TRP ARG LEU THR GLU SER ILE LYS THR THR LEU GLN ASN SEQRES 18 A 243 ARG PRO ASP MET ILE LEU ARG LYS SER LEU SER ARG GLU SEQRES 19 A 243 GLU GLU GLN ILE LEU TRP SER LEU THR SEQRES 1 B 243 GLY PRO HIS MET LYS ARG TYR ASN VAL ILE THR ILE PHE SEQRES 2 B 243 PRO GLU MET ILE ASN GLU ILE PHE LYS TYR GLY VAL LEU SEQRES 3 B 243 SER LYS GLY ILE ASP ILE GLY LEU PHE ARG VAL ASN PRO SEQRES 4 B 243 ILE ASN LEU ARG ASP TYR THR GLU ASP LYS HIS LYS THR SEQRES 5 B 243 VAL ASP ASP TYR GLN TYR GLY GLY GLY HIS GLY LEU VAL SEQRES 6 B 243 MET LYS PRO GLU PRO ILE TYR LYS ALA ILE ALA ASP LEU SEQRES 7 B 243 LYS SER LYS LYS ASP THR HIS VAL VAL PHE LEU ASP PRO SEQRES 8 B 243 ARG GLY GLU GLN PHE THR GLN LYS THR ALA GLU ARG LEU SEQRES 9 B 243 TYR ASN TYR ASP ASP ILE THR PHE VAL CYS GLY ARG TYR SEQRES 10 B 243 GLU GLY ILE ASP ASP ARG VAL ARG GLU LEU MET ALA ASP SEQRES 11 B 243 GLU MET ILE SER ILE GLY ASP PHE VAL ILE THR GLY GLY SEQRES 12 B 243 GLU LEU ALA ALA VAL THR ILE ILE ASP ALA VAL ALA ARG SEQRES 13 B 243 LEU ILE PRO GLY VAL LEU GLY ASP GLU ASN SER PRO ASN SEQRES 14 B 243 GLU GLU SER PHE THR THR GLY LEU LEU GLU TYR PRO HIS SEQRES 15 B 243 PHE THR ARG PRO ALA GLU PHE MET GLY LYS LYS VAL PRO SEQRES 16 B 243 GLU VAL LEU ILE SER GLY ASN HIS GLU GLU ILE ARG ARG SEQRES 17 B 243 TRP ARG LEU THR GLU SER ILE LYS THR THR LEU GLN ASN SEQRES 18 B 243 ARG PRO ASP MET ILE LEU ARG LYS SER LEU SER ARG GLU SEQRES 19 B 243 GLU GLU GLN ILE LEU TRP SER LEU THR HET EDO A 601 4 HET GOL A 602 6 HET EDO A 603 4 HET CL A 604 1 HET SAM A 605 27 HET CL B 301 1 HET CL B 302 1 HET SAM B 303 27 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM SAM S-ADENOSYLMETHIONINE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 4 GOL C3 H8 O3 FORMUL 6 CL 3(CL 1-) FORMUL 7 SAM 2(C15 H22 N6 O5 S) FORMUL 14 HOH *396(H2 O) HELIX 1 AA1 PHE A 10 PHE A 18 1 9 HELIX 2 AA2 GLY A 21 ILE A 29 1 9 HELIX 3 AA3 ARG A 40 THR A 43 5 4 HELIX 4 AA4 LYS A 64 LYS A 79 1 16 HELIX 5 AA5 THR A 94 TYR A 102 1 9 HELIX 6 AA6 ASP A 118 ALA A 126 1 9 HELIX 7 AA7 GLY A 139 ARG A 153 1 15 HELIX 8 AA8 PRO A 192 GLY A 198 1 7 HELIX 9 AA9 ASN A 199 ARG A 219 1 21 HELIX 10 AB1 ARG A 219 LYS A 226 1 8 HELIX 11 AB2 SER A 229 THR A 240 1 12 HELIX 12 AB3 PHE B 10 PHE B 18 1 9 HELIX 13 AB4 TYR B 20 ILE B 29 1 10 HELIX 14 AB5 ARG B 40 THR B 43 5 4 HELIX 15 AB6 LYS B 64 LYS B 79 1 16 HELIX 16 AB7 THR B 94 ASN B 103 1 10 HELIX 17 AB8 ASP B 118 ALA B 126 1 9 HELIX 18 AB9 GLY B 139 ARG B 153 1 15 HELIX 19 AC1 PRO B 192 GLY B 198 1 7 HELIX 20 AC2 ASN B 199 ARG B 219 1 21 HELIX 21 AC3 ARG B 219 LYS B 226 1 8 HELIX 22 AC4 SER B 229 SER B 238 1 10 SHEET 1 AA1 6 PHE A 32 ASN A 38 0 SHEET 2 AA1 6 LYS A 2 THR A 8 1 N VAL A 6 O ILE A 37 SHEET 3 AA1 6 ASP A 106 VAL A 110 1 O PHE A 109 N ASN A 5 SHEET 4 AA1 6 HIS A 82 LEU A 86 1 N HIS A 82 O THR A 108 SHEET 5 AA1 6 GLU A 128 SER A 131 1 O GLU A 128 N PHE A 85 SHEET 6 AA1 6 GLU A 91 GLN A 92 1 N GLU A 91 O SER A 131 SHEET 1 AA2 2 ASP A 51 TYR A 53 0 SHEET 2 AA2 2 LEU A 61 MET A 63 -1 O VAL A 62 N ASP A 52 SHEET 1 AA3 2 GLU A 185 PHE A 186 0 SHEET 2 AA3 2 LYS A 189 LYS A 190 -1 O LYS A 189 N PHE A 186 SHEET 1 AA4 6 PHE B 32 ASN B 38 0 SHEET 2 AA4 6 LYS B 2 THR B 8 1 N VAL B 6 O ILE B 37 SHEET 3 AA4 6 ASP B 106 VAL B 110 1 O PHE B 109 N ASN B 5 SHEET 4 AA4 6 HIS B 82 LEU B 86 1 N VAL B 84 O THR B 108 SHEET 5 AA4 6 GLU B 128 SER B 131 1 O GLU B 128 N PHE B 85 SHEET 6 AA4 6 GLU B 91 GLN B 92 1 N GLU B 91 O SER B 131 SHEET 1 AA5 2 ASP B 51 TYR B 53 0 SHEET 2 AA5 2 LEU B 61 MET B 63 -1 O VAL B 62 N ASP B 52 SHEET 1 AA6 2 GLU B 185 PHE B 186 0 SHEET 2 AA6 2 LYS B 189 LYS B 190 -1 O LYS B 189 N PHE B 186 CISPEP 1 ARG A 182 PRO A 183 0 2.83 CISPEP 2 ARG B 182 PRO B 183 0 6.59 CRYST1 85.390 85.390 210.710 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004746 0.00000 CONECT 3864 3865 3866 CONECT 3865 3864 CONECT 3866 3864 3867 CONECT 3867 3866 CONECT 3868 3869 3870 CONECT 3869 3868 CONECT 3870 3868 3871 3872 CONECT 3871 3870 CONECT 3872 3870 3873 CONECT 3873 3872 CONECT 3874 3875 3876 CONECT 3875 3874 CONECT 3876 3874 3877 CONECT 3877 3876 CONECT 3879 3880 CONECT 3880 3879 3881 3884 CONECT 3881 3880 3882 3883 CONECT 3882 3881 CONECT 3883 3881 CONECT 3884 3880 3885 CONECT 3885 3884 3886 CONECT 3886 3885 3887 3888 CONECT 3887 3886 CONECT 3888 3886 3889 CONECT 3889 3888 3890 3891 CONECT 3890 3889 3895 CONECT 3891 3889 3892 3893 CONECT 3892 3891 CONECT 3893 3891 3894 3895 CONECT 3894 3893 CONECT 3895 3890 3893 3896 CONECT 3896 3895 3897 3905 CONECT 3897 3896 3898 CONECT 3898 3897 3899 CONECT 3899 3898 3900 3905 CONECT 3900 3899 3901 3902 CONECT 3901 3900 CONECT 3902 3900 3903 CONECT 3903 3902 3904 CONECT 3904 3903 3905 CONECT 3905 3896 3899 3904 CONECT 3908 3909 CONECT 3909 3908 3910 3913 CONECT 3910 3909 3911 3912 CONECT 3911 3910 CONECT 3912 3910 CONECT 3913 3909 3914 CONECT 3914 3913 3915 CONECT 3915 3914 3916 3917 CONECT 3916 3915 CONECT 3917 3915 3918 CONECT 3918 3917 3919 3920 CONECT 3919 3918 3924 CONECT 3920 3918 3921 3922 CONECT 3921 3920 CONECT 3922 3920 3923 3924 CONECT 3923 3922 CONECT 3924 3919 3922 3925 CONECT 3925 3924 3926 3934 CONECT 3926 3925 3927 CONECT 3927 3926 3928 CONECT 3928 3927 3929 3934 CONECT 3929 3928 3930 3931 CONECT 3930 3929 CONECT 3931 3929 3932 CONECT 3932 3931 3933 CONECT 3933 3932 3934 CONECT 3934 3925 3928 3933 CONECT 3935 3936 3937 CONECT 3936 3935 CONECT 3937 3935 3938 CONECT 3938 3937 CONECT 3939 3940 3941 CONECT 3940 3939 CONECT 3941 3939 3942 CONECT 3942 3941 CONECT 3943 3944 3945 CONECT 3944 3943 CONECT 3945 3943 3946 CONECT 3946 3945 MASTER 377 0 11 22 20 0 0 6 4315 2 80 38 END