HEADER LIGASE 20-DEC-22 8C13 TITLE CRYSTAL STRUCTURE OF PVHL:ELONGINC:ELONGINB COMPLEX BOUND TO PROTAC TITLE 2 JW48 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGIN-B; COMPND 3 CHAIN: J; COMPND 4 SYNONYM: ELOB,ELONGIN 18 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 5 FACTOR SIII SUBUNIT B,SIII P18,TRANSCRIPTION ELONGATION FACTOR B COMPND 6 POLYPEPTIDE 2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ELONGIN-C; COMPND 10 CHAIN: K; COMPND 11 SYNONYM: ELOC,ELONGIN 15 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 12 FACTOR SIII SUBUNIT C,SIII P15,TRANSCRIPTION ELONGATION FACTOR B COMPND 13 POLYPEPTIDE 1; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR; COMPND 17 CHAIN: L; COMPND 18 SYNONYM: PROTEIN G7,PVHL; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ELOB, TCEB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ELOC, TCEB1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: VHL; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3 LIGASE, PROTAC, VHL, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KRAEMER,J.WECKESSER,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 22-NOV-23 8C13 1 JRNL REVDAT 1 28-DEC-22 8C13 0 JRNL AUTH M.P.SCHWALM,A.KRAMER,A.DOLLE,J.WECKESSER,X.YU,J.JIN, JRNL AUTH 2 K.SAXENA,S.KNAPP JRNL TITL TRACKING THE PROTAC DEGRADATION PATHWAY IN LIVING CELLS JRNL TITL 2 HIGHLIGHTS THE IMPORTANCE OF TERNARY COMPLEX MEASUREMENT FOR JRNL TITL 3 PROTAC OPTIMIZATION. JRNL REF CELL CHEM BIOL V. 30 753 2023 JRNL REFN ESSN 2451-9456 JRNL PMID 37354907 JRNL DOI 10.1016/J.CHEMBIOL.2023.06.002 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 18775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.905 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2704 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.99200 REMARK 3 B22 (A**2) : -0.66300 REMARK 3 B33 (A**2) : 3.49800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.23300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.336 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.417 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2831 ; 0.002 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2576 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3854 ; 0.756 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6001 ; 0.277 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 6.136 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ; 2.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;12.511 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.037 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3312 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 544 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 488 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 52 ; 0.099 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1378 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 72 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1372 ; 1.082 ; 4.138 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1372 ; 1.081 ; 4.138 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1709 ; 1.867 ; 6.198 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1709 ; 1.867 ; 6.200 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1459 ; 1.079 ; 4.309 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1459 ; 1.079 ; 4.309 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2145 ; 1.861 ; 6.412 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2146 ; 1.860 ; 6.413 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 1 J 104 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6811 -1.9807 4.0889 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.3910 REMARK 3 T33: 0.2772 T12: -0.0000 REMARK 3 T13: 0.0141 T23: -0.1608 REMARK 3 L TENSOR REMARK 3 L11: 0.8021 L22: 5.1506 REMARK 3 L33: 4.0119 L12: 1.5129 REMARK 3 L13: 1.0949 L23: 2.2084 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: 0.3730 S13: -0.2688 REMARK 3 S21: -0.5306 S22: 0.2064 S23: -0.4171 REMARK 3 S31: 0.1427 S32: -0.0328 S33: -0.1433 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -11.5520 4.9450 20.3211 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: 0.0271 REMARK 3 T33: 0.0931 T12: 0.0098 REMARK 3 T13: -0.0418 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 4.7941 L22: 3.2127 REMARK 3 L33: 3.2917 L12: 0.3025 REMARK 3 L13: 0.0541 L23: 0.1467 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: 0.0564 S13: -0.4005 REMARK 3 S21: 0.1119 S22: 0.0019 S23: 0.1059 REMARK 3 S31: 0.0474 S32: -0.2607 S33: -0.1123 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 10.7877 -1.2691 36.3556 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0333 REMARK 3 T33: 0.1043 T12: -0.0015 REMARK 3 T13: -0.0123 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 2.5796 L22: 4.1029 REMARK 3 L33: 1.6959 L12: -2.4781 REMARK 3 L13: 1.4145 L23: -2.0061 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: -0.2311 S13: -0.1160 REMARK 3 S21: 0.3482 S22: 0.1254 S23: 0.1668 REMARK 3 S31: -0.0621 S32: -0.0879 S33: -0.0546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8C13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18781 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.833 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.20700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, HEPES PH7, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.89850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.39350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.89850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.39350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO J 105 REMARK 465 GLN J 106 REMARK 465 ASP J 107 REMARK 465 SER J 108 REMARK 465 GLY J 109 REMARK 465 SER J 110 REMARK 465 SER J 111 REMARK 465 ALA J 112 REMARK 465 ASN J 113 REMARK 465 GLU J 114 REMARK 465 GLN J 115 REMARK 465 ALA J 116 REMARK 465 VAL J 117 REMARK 465 GLN J 118 REMARK 465 MET K 1 REMARK 465 ASP K 2 REMARK 465 GLY K 3 REMARK 465 GLU K 4 REMARK 465 GLU K 5 REMARK 465 LYS K 6 REMARK 465 THR K 7 REMARK 465 TYR K 8 REMARK 465 GLY K 9 REMARK 465 GLY K 10 REMARK 465 CYS K 11 REMARK 465 GLU K 12 REMARK 465 GLY K 13 REMARK 465 PRO K 14 REMARK 465 ASP K 15 REMARK 465 ALA K 16 REMARK 465 GLY K 50 REMARK 465 GLN K 51 REMARK 465 PHE K 52 REMARK 465 ALA K 53 REMARK 465 GLU K 54 REMARK 465 MET L 54 REMARK 465 GLU L 55 REMARK 465 ALA L 56 REMARK 465 GLY L 57 REMARK 465 ARG L 58 REMARK 465 HIS L 208 REMARK 465 GLN L 209 REMARK 465 ARG L 210 REMARK 465 MET L 211 REMARK 465 GLY L 212 REMARK 465 ASP L 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS J 19 CE NZ REMARK 470 LYS J 55 CG CD CE NZ REMARK 470 GLU J 59 CG CD OE1 OE2 REMARK 470 GLN J 65 CG CD OE1 NE2 REMARK 470 ASP J 82 CG OD1 OD2 REMARK 470 ASP J 83 CG OD1 OD2 REMARK 470 THR J 84 OG1 CG2 REMARK 470 LYS K 43 CE NZ REMARK 470 PRO K 49 CG CD REMARK 470 ASN K 55 CG OD1 ND2 REMARK 470 LYS K 80 NZ REMARK 470 SER K 87 OG REMARK 470 ARG L 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 113 CG CD NE CZ NH1 NH2 REMARK 470 ASP L 143 CG OD1 OD2 REMARK 470 ARG L 177 NE CZ NH1 NH2 REMARK 470 ARG L 182 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 196 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS J 10 -114.76 55.95 REMARK 500 ARG J 80 -70.66 -90.76 REMARK 500 ALA J 81 -77.50 66.48 REMARK 500 ASP J 82 -76.45 -69.54 REMARK 500 ASP J 83 -59.65 -148.53 REMARK 500 CYS J 89 89.32 -154.12 REMARK 500 ASN L 90 -169.30 -74.64 REMARK 500 ASP L 143 -134.09 68.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 8C13 J 1 118 UNP Q15370 ELOB_HUMAN 1 118 DBREF 8C13 K 1 112 UNP Q15369 ELOC_HUMAN 1 112 DBREF 8C13 L 54 213 UNP P40337 VHL_HUMAN 1 160 SEQRES 1 J 118 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 J 118 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 J 118 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 J 118 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 J 118 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 J 118 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 J 118 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 J 118 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 9 J 118 PRO GLN ASP SER GLY SER SER ALA ASN GLU GLN ALA VAL SEQRES 10 J 118 GLN SEQRES 1 K 112 MET ASP GLY GLU GLU LYS THR TYR GLY GLY CYS GLU GLY SEQRES 2 K 112 PRO ASP ALA MET TYR VAL LYS LEU ILE SER SER ASP GLY SEQRES 3 K 112 HIS GLU PHE ILE VAL LYS ARG GLU HIS ALA LEU THR SER SEQRES 4 K 112 GLY THR ILE LYS ALA MET LEU SER GLY PRO GLY GLN PHE SEQRES 5 K 112 ALA GLU ASN GLU THR ASN GLU VAL ASN PHE ARG GLU ILE SEQRES 6 K 112 PRO SER HIS VAL LEU SER LYS VAL CYS MET TYR PHE THR SEQRES 7 K 112 TYR LYS VAL ARG TYR THR ASN SER SER THR GLU ILE PRO SEQRES 8 K 112 GLU PHE PRO ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU SEQRES 9 K 112 MET ALA ALA ASN PHE LEU ASP CYS SEQRES 1 L 160 MET GLU ALA GLY ARG PRO ARG PRO VAL LEU ARG SER VAL SEQRES 2 L 160 ASN SER ARG GLU PRO SER GLN VAL ILE PHE CYS ASN ARG SEQRES 3 L 160 SER PRO ARG VAL VAL LEU PRO VAL TRP LEU ASN PHE ASP SEQRES 4 L 160 GLY GLU PRO GLN PRO TYR PRO THR LEU PRO PRO GLY THR SEQRES 5 L 160 GLY ARG ARG ILE HIS SER TYR ARG GLY HIS LEU TRP LEU SEQRES 6 L 160 PHE ARG ASP ALA GLY THR HIS ASP GLY LEU LEU VAL ASN SEQRES 7 L 160 GLN THR GLU LEU PHE VAL PRO SER LEU ASN VAL ASP GLY SEQRES 8 L 160 GLN PRO ILE PHE ALA ASN ILE THR LEU PRO VAL TYR THR SEQRES 9 L 160 LEU LYS GLU ARG CYS LEU GLN VAL VAL ARG SER LEU VAL SEQRES 10 L 160 LYS PRO GLU ASN TYR ARG ARG LEU ASP ILE VAL ARG SER SEQRES 11 L 160 LEU TYR GLU ASP LEU GLU ASP HIS PRO ASN VAL GLN LYS SEQRES 12 L 160 ASP LEU GLU ARG LEU THR GLN GLU ARG ILE ALA HIS GLN SEQRES 13 L 160 ARG MET GLY ASP HET SYF L 301 60 HETNAM SYF (2~{S},4~{R})-1-[(2~{S})-2-[3-[2-[2-[2- HETNAM 2 SYF (ACETAMIDOMETHYL)-4-(6,7-DIHYDRO-5~{H}-PYRROLO[1,2- HETNAM 3 SYF A]IMIDAZOL-2-YL)PHENOXY]ETHOXY]ETHOXY]PROPANOYLAMINO]- HETNAM 4 SYF 3,3-DIMETHYL-BUTANOYL]-~{N}-[[4-(4-METHYL-1,3-THIAZOL- HETNAM 5 SYF 5-YL)PHENYL]METHYL]-4-OXIDANYL-PYRROLIDINE-2- HETNAM 6 SYF CARBOXAMIDE FORMUL 4 SYF C44 H57 N7 O8 S FORMUL 5 HOH *20(H2 O) HELIX 1 AA1 THR J 23 LYS J 36 1 14 HELIX 2 AA2 PRO J 38 ASP J 40 5 3 HELIX 3 AA3 THR J 56 GLY J 61 1 6 HELIX 4 AA4 PRO J 100 LYS J 104 5 5 HELIX 5 AA5 ARG K 33 LEU K 37 1 5 HELIX 6 AA6 SER K 39 GLY K 48 1 10 HELIX 7 AA7 PRO K 66 THR K 84 1 19 HELIX 8 AA8 ALA K 96 ASP K 111 1 16 HELIX 9 AA9 THR L 157 VAL L 170 1 14 HELIX 10 AB1 LYS L 171 LEU L 178 5 8 HELIX 11 AB2 VAL L 181 ASP L 190 1 10 HELIX 12 AB3 ASN L 193 ALA L 207 1 15 SHEET 1 AA1 7 GLN J 42 TYR J 45 0 SHEET 2 AA1 7 ALA J 73 PHE J 79 -1 O ALA J 78 N ARG J 43 SHEET 3 AA1 7 ASP J 2 ARG J 9 1 N MET J 6 O VAL J 75 SHEET 4 AA1 7 THR J 12 LYS J 19 -1 O ALA J 18 N VAL J 3 SHEET 5 AA1 7 GLU K 28 LYS K 32 1 O ILE K 30 N THR J 13 SHEET 6 AA1 7 TYR K 18 ILE K 22 -1 N LEU K 21 O PHE K 29 SHEET 7 AA1 7 GLU K 59 ASN K 61 1 O VAL K 60 N ILE K 22 SHEET 1 AA2 4 GLY L 106 TYR L 112 0 SHEET 2 AA2 4 PRO L 71 ASN L 78 -1 N VAL L 74 O ILE L 109 SHEET 3 AA2 4 ILE L 147 THR L 152 1 O ILE L 151 N CYS L 77 SHEET 4 AA2 4 LEU L 129 VAL L 130 -1 N LEU L 129 O THR L 152 SHEET 1 AA3 3 PRO L 95 PRO L 97 0 SHEET 2 AA3 3 VAL L 84 LEU L 89 -1 N TRP L 88 O GLN L 96 SHEET 3 AA3 3 LEU L 116 ASP L 121 -1 O ARG L 120 N LEU L 85 CRYST1 73.797 60.787 97.228 90.00 100.58 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013551 0.000000 0.002531 0.00000 SCALE2 0.000000 0.016451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010463 0.00000