HEADER TRANSFERASE 28-DEC-22 8C3R TITLE CRYSTAL STRUCTURE OF DYRK1A IN COMPLEX WITH GOSSYPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE COMPND 3 1A; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DUAL SPECIFICITY YAK1-RELATED KINASE,HP86,PROTEIN KINASE COMPND 6 MINIBRAIN HOMOLOG,MNBH,HMNB; COMPND 7 EC: 2.7.12.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYRK1A, DYRK, MNB, MNBH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, DIABETES, KINASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.GRYGIER,K.PUSTELNY,G.DUBIN,A.CZARNA REVDAT 2 16-OCT-24 8C3R 1 REMARK REVDAT 1 10-JAN-24 8C3R 0 JRNL AUTH P.GRYGIER,K.PUSTELNY,G.DUBIN,A.CZARNA JRNL TITL CRYSTAL STRUCTURE OF DYRK1A IN COMPLEX WITH GOSSYPIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 55222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3600 - 5.5900 1.00 2716 145 0.1666 0.1759 REMARK 3 2 5.5900 - 4.4400 1.00 2642 159 0.1512 0.1651 REMARK 3 3 4.4400 - 3.8800 1.00 2640 158 0.1398 0.1512 REMARK 3 4 3.8800 - 3.5200 1.00 2698 107 0.1586 0.1877 REMARK 3 5 3.5200 - 3.2700 1.00 2621 135 0.1784 0.2103 REMARK 3 6 3.2700 - 3.0800 1.00 2631 142 0.1902 0.2215 REMARK 3 7 3.0800 - 2.9200 1.00 2640 154 0.2058 0.2258 REMARK 3 8 2.9200 - 2.8000 1.00 2613 142 0.2269 0.2633 REMARK 3 9 2.8000 - 2.6900 1.00 2639 150 0.2108 0.2330 REMARK 3 10 2.6900 - 2.6000 1.00 2629 149 0.2179 0.2339 REMARK 3 11 2.5900 - 2.5100 1.00 2606 155 0.2079 0.2675 REMARK 3 12 2.5100 - 2.4400 1.00 2646 133 0.2206 0.2533 REMARK 3 13 2.4400 - 2.3800 1.00 2661 109 0.2120 0.2560 REMARK 3 14 2.3800 - 2.3200 1.00 2596 129 0.2230 0.2639 REMARK 3 15 2.3200 - 2.2700 1.00 2645 132 0.2262 0.2715 REMARK 3 16 2.2700 - 2.2200 1.00 2620 150 0.2394 0.2765 REMARK 3 17 2.2200 - 2.1700 0.98 2577 134 0.2502 0.2695 REMARK 3 18 2.1700 - 2.1300 0.98 2567 130 0.2546 0.3452 REMARK 3 19 2.1300 - 2.1000 0.97 2575 116 0.2769 0.3182 REMARK 3 20 2.1000 - 2.0600 0.95 2497 134 0.2979 0.3348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5757 REMARK 3 ANGLE : 0.703 7806 REMARK 3 CHIRALITY : 0.048 836 REMARK 3 PLANARITY : 0.004 1051 REMARK 3 DIHEDRAL : 15.420 2148 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3148 -6.7683 27.8903 REMARK 3 T TENSOR REMARK 3 T11: 0.3348 T22: 0.2559 REMARK 3 T33: 0.2680 T12: -0.0810 REMARK 3 T13: -0.0229 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.4089 L22: 4.0433 REMARK 3 L33: 3.1731 L12: -0.9104 REMARK 3 L13: 0.7557 L23: -0.3159 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: -0.2858 S13: -0.2697 REMARK 3 S21: 0.2814 S22: 0.0244 S23: 0.0032 REMARK 3 S31: -0.0176 S32: -0.1709 S33: -0.0556 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2399 -7.2554 20.2897 REMARK 3 T TENSOR REMARK 3 T11: 0.2069 T22: 0.2014 REMARK 3 T33: 0.3775 T12: 0.0127 REMARK 3 T13: 0.0262 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 3.0907 L22: 5.3374 REMARK 3 L33: 1.8229 L12: -0.6282 REMARK 3 L13: 2.3342 L23: 0.0813 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.3095 S13: -0.4123 REMARK 3 S21: -0.3607 S22: -0.0901 S23: -0.6742 REMARK 3 S31: 0.1321 S32: 0.1221 S33: 0.0410 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6148 19.5659 12.7920 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.2908 REMARK 3 T33: 0.1732 T12: 0.0142 REMARK 3 T13: 0.0453 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.9125 L22: 1.7920 REMARK 3 L33: 1.3502 L12: 0.5224 REMARK 3 L13: 0.0428 L23: -0.1824 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.1726 S13: 0.1230 REMARK 3 S21: 0.0079 S22: -0.0078 S23: 0.1052 REMARK 3 S31: -0.0015 S32: -0.2076 S33: -0.0044 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.4375 58.6994 24.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.5317 T22: 0.3598 REMARK 3 T33: 0.5195 T12: 0.1787 REMARK 3 T13: 0.0673 T23: 0.0842 REMARK 3 L TENSOR REMARK 3 L11: 3.0584 L22: 5.4927 REMARK 3 L33: 3.0865 L12: -0.8349 REMARK 3 L13: -0.6459 L23: -1.8692 REMARK 3 S TENSOR REMARK 3 S11: 0.0932 S12: 0.1276 S13: -0.1031 REMARK 3 S21: 0.3379 S22: 0.2511 S23: 0.6736 REMARK 3 S31: -0.3997 S32: -0.4032 S33: -0.3194 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5787 50.3501 32.9904 REMARK 3 T TENSOR REMARK 3 T11: 0.5804 T22: 0.2542 REMARK 3 T33: 0.3356 T12: 0.0497 REMARK 3 T13: -0.0565 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 4.0147 L22: 3.2027 REMARK 3 L33: 2.2638 L12: -0.6201 REMARK 3 L13: 0.0349 L23: -0.1556 REMARK 3 S TENSOR REMARK 3 S11: 0.1003 S12: -0.1816 S13: 0.1398 REMARK 3 S21: 0.5729 S22: -0.1371 S23: -0.2690 REMARK 3 S31: -0.6365 S32: -0.0126 S33: 0.0175 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 322 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2673 33.6755 38.6535 REMARK 3 T TENSOR REMARK 3 T11: 0.4441 T22: 0.3438 REMARK 3 T33: 0.5893 T12: 0.0224 REMARK 3 T13: -0.1412 T23: 0.1448 REMARK 3 L TENSOR REMARK 3 L11: 1.1918 L22: 1.6212 REMARK 3 L33: 1.8560 L12: 0.2874 REMARK 3 L13: -0.6757 L23: -0.7596 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.3408 S13: -0.5255 REMARK 3 S21: 0.4478 S22: -0.2695 S23: -0.6461 REMARK 3 S31: -0.2848 S32: 0.2652 S33: 0.2347 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55250 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 48.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 1.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 0.2 M AMMONIUM REMARK 280 ACETATE, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.24250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.24250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.24250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 HIS A 129 REMARK 465 LYS A 130 REMARK 465 LYS A 131 REMARK 465 GLU A 132 REMARK 465 ARG A 133 REMARK 465 LYS A 134 REMARK 465 LYS A 481 REMARK 465 THR A 482 REMARK 465 ALA A 483 REMARK 465 ASP A 484 REMARK 465 GLU A 485 REMARK 465 GLY A 486 REMARK 465 THR A 487 REMARK 465 ASN A 488 REMARK 465 THR A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 ASP B 126 REMARK 465 SER B 127 REMARK 465 SER B 128 REMARK 465 HIS B 129 REMARK 465 LYS B 130 REMARK 465 LYS B 131 REMARK 465 GLU B 132 REMARK 465 ARG B 133 REMARK 465 LYS B 134 REMARK 465 VAL B 135 REMARK 465 LYS B 481 REMARK 465 THR B 482 REMARK 465 ALA B 483 REMARK 465 ASP B 484 REMARK 465 GLU B 485 REMARK 465 GLY B 486 REMARK 465 THR B 487 REMARK 465 ASN B 488 REMARK 465 THR B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 HIS B 492 REMARK 465 HIS B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 135 CG1 CG2 REMARK 470 LYS A 154 CD CE NZ REMARK 470 LYS A 194 CD CE NZ REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ASP A 214 CG OD1 OD2 REMARK 470 THR A 215 OG1 CG2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 MET A 217 CG SD CE REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 ASN A 251 OD1 ND2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 320 CD OE1 NE2 REMARK 470 GLN A 387 CD OE1 NE2 REMARK 470 LEU A 398 CD1 CD2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 ASP A 410 CG OD1 OD2 REMARK 470 LYS A 412 CD CE NZ REMARK 470 LYS A 465 CD CE NZ REMARK 470 LYS A 480 CG CD CE NZ REMARK 470 LYS B 150 CE NZ REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 GLN B 182 OE1 NE2 REMARK 470 LYS B 193 CD CE NZ REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LYS B 212 CD CE NZ REMARK 470 ASP B 214 CG OD1 OD2 REMARK 470 THR B 215 OG1 CG2 REMARK 470 GLU B 216 CG CD OE1 OE2 REMARK 470 LYS B 218 CE NZ REMARK 470 ASN B 297 CG OD1 ND2 REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 ARG B 300 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 316 CG CD OE1 NE2 REMARK 470 LYS B 407 CG CD CE NZ REMARK 470 LYS B 409 CD CE NZ REMARK 470 LYS B 412 CG CD CE NZ REMARK 470 LYS B 422 CG CD CE NZ REMARK 470 LYS B 465 CE NZ REMARK 470 LYS B 480 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 158 -54.77 -142.81 REMARK 500 THR A 215 6.56 59.53 REMARK 500 GLU A 216 10.23 -141.39 REMARK 500 TYR A 219 -130.61 -99.81 REMARK 500 SER A 242 -155.05 -90.74 REMARK 500 LEU A 281 -69.48 -91.67 REMARK 500 ASP A 287 47.66 -153.81 REMARK 500 ASP A 307 92.11 61.95 REMARK 500 GLN A 323 149.33 71.24 REMARK 500 ASP A 339 -157.68 -138.27 REMARK 500 SER A 362 68.90 -100.67 REMARK 500 ASP A 410 -136.05 41.66 REMARK 500 ASN B 137 72.86 -109.98 REMARK 500 ASP B 142 -159.95 -105.84 REMARK 500 ASP B 157 -0.96 62.89 REMARK 500 SER B 242 -161.83 -77.80 REMARK 500 LEU B 281 -73.35 -85.65 REMARK 500 ASP B 287 45.61 -159.42 REMARK 500 ASP B 307 80.19 65.44 REMARK 500 GLN B 323 139.21 72.62 REMARK 500 ASP B 339 -151.49 -129.28 REMARK 500 SER B 362 69.67 -101.20 REMARK 500 PRO B 418 109.29 -51.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 8C3R A 126 489 UNP Q13627 DYR1A_HUMAN 126 489 DBREF 8C3R B 126 489 UNP Q13627 DYR1A_HUMAN 126 489 SEQADV 8C3R HIS A 490 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS A 491 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS A 492 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS A 493 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS A 494 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS A 495 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS B 490 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS B 491 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS B 492 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS B 493 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS B 494 UNP Q13627 EXPRESSION TAG SEQADV 8C3R HIS B 495 UNP Q13627 EXPRESSION TAG SEQRES 1 A 370 ASP SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN ASP SEQRES 2 A 370 GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS ASN SEQRES 3 A 370 GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER LEU SEQRES 4 A 370 ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA TYR SEQRES 5 A 370 ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE ILE SEQRES 6 A 370 LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE GLU SEQRES 7 A 370 VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR GLU SEQRES 8 A 370 MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE MET SEQRES 9 A 370 PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU SER SEQRES 10 A 370 TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE ARG SEQRES 11 A 370 GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN GLN SEQRES 12 A 370 MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU LEU SEQRES 13 A 370 SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU SEQRES 14 A 370 LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL ASP SEQRES 15 A 370 PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR GLN SEQRES 16 A 370 PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL LEU SEQRES 17 A 370 LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP SER SEQRES 18 A 370 LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU PRO SEQRES 19 A 370 LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN LYS SEQRES 20 A 370 ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE LEU SEQRES 21 A 370 ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS LEU SEQRES 22 A 370 PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP GLY SEQRES 23 A 370 LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU HIS SEQRES 24 A 370 ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY ARG SEQRES 25 A 370 ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR LEU SEQRES 26 A 370 LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR ASP SEQRES 27 A 370 PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN HIS SEQRES 28 A 370 SER PHE PHE LYS LYS THR ALA ASP GLU GLY THR ASN THR SEQRES 29 A 370 HIS HIS HIS HIS HIS HIS SEQRES 1 B 370 ASP SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN ASP SEQRES 2 B 370 GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS ASN SEQRES 3 B 370 GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER LEU SEQRES 4 B 370 ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA TYR SEQRES 5 B 370 ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE ILE SEQRES 6 B 370 LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE GLU SEQRES 7 B 370 VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR GLU SEQRES 8 B 370 MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE MET SEQRES 9 B 370 PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU SER SEQRES 10 B 370 TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE ARG SEQRES 11 B 370 GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN GLN SEQRES 12 B 370 MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU LEU SEQRES 13 B 370 SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU SEQRES 14 B 370 LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL ASP SEQRES 15 B 370 PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR GLN SEQRES 16 B 370 PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL LEU SEQRES 17 B 370 LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP SER SEQRES 18 B 370 LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU PRO SEQRES 19 B 370 LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN LYS SEQRES 20 B 370 ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE LEU SEQRES 21 B 370 ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS LEU SEQRES 22 B 370 PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP GLY SEQRES 23 B 370 LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU HIS SEQRES 24 B 370 ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY ARG SEQRES 25 B 370 ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR LEU SEQRES 26 B 370 LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR ASP SEQRES 27 B 370 PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN HIS SEQRES 28 B 370 SER PHE PHE LYS LYS THR ALA ASP GLU GLY THR ASN THR SEQRES 29 B 370 HIS HIS HIS HIS HIS HIS MODRES 8C3R PTR A 321 TYR MODIFIED RESIDUE MODRES 8C3R PTR B 321 TYR MODIFIED RESIDUE HET PTR A 321 16 HET PTR B 321 16 HET R7O A 501 34 HET ACT A 502 4 HET R7O B 501 34 HET ACT B 502 4 HET ACT B 503 4 HET ACT B 504 4 HETNAM PTR O-PHOSPHOTYROSINE HETNAM R7O GOSSYPIN HETNAM ACT ACETATE ION HETSYN PTR PHOSPHONOTYROSINE HETSYN R7O 2-[3,4-BIS(OXIDANYL)PHENYL]-8-[(2S,3R,4S,5S,6R)-6- HETSYN 2 R7O (HYDROXYMETHYL)-3,4,5-TRIS(OXIDANYL)OXAN-2-YL]OXY-3,5, HETSYN 3 R7O 7-TRIS(OXIDANYL)CHROMEN-4-ONE; 2-(3,4- HETSYN 4 R7O DIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-8-[(2S,3R,4S,5S,6R)- HETSYN 5 R7O 3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)OXAN-2- HETSYN 6 R7O YL]OXYCHROMEN-4-ONE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 R7O 2(C21 H20 O13) FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 9 HOH *420(H2 O) HELIX 1 AA1 TYR A 136 TYR A 140 5 5 HELIX 2 AA2 LYS A 193 LYS A 212 1 20 HELIX 3 AA3 ASN A 244 THR A 252 1 9 HELIX 4 AA4 SER A 258 ALA A 277 1 20 HELIX 5 AA5 LYS A 289 GLU A 291 5 3 HELIX 6 AA6 SER A 324 ARG A 328 5 5 HELIX 7 AA7 SER A 329 LEU A 334 1 6 HELIX 8 AA8 LEU A 340 GLY A 357 1 18 HELIX 9 AA9 ASN A 365 GLY A 378 1 14 HELIX 10 AB1 PRO A 381 ASP A 386 1 6 HELIX 11 AB2 LYS A 390 LYS A 393 5 4 HELIX 12 AB3 LYS A 422 LEU A 427 1 6 HELIX 13 AB4 GLY A 433 ARG A 437 5 5 HELIX 14 AB5 THR A 445 LEU A 460 1 16 HELIX 15 AB6 GLN A 469 GLN A 475 1 7 HELIX 16 AB7 LYS B 193 ASN B 211 1 19 HELIX 17 AB8 GLU B 216 ILE B 221 5 6 HELIX 18 AB9 ASN B 244 THR B 252 1 9 HELIX 19 AC1 SER B 258 ALA B 277 1 20 HELIX 20 AC2 LYS B 289 GLU B 291 5 3 HELIX 21 AC3 SER B 324 ARG B 328 5 5 HELIX 22 AC4 SER B 329 LEU B 334 1 6 HELIX 23 AC5 LEU B 340 GLY B 357 1 18 HELIX 24 AC6 ASN B 365 GLY B 378 1 14 HELIX 25 AC7 PRO B 381 ASP B 386 1 6 HELIX 26 AC8 LYS B 390 PHE B 394 1 5 HELIX 27 AC9 LYS B 422 LEU B 427 1 6 HELIX 28 AD1 GLY B 433 ARG B 437 5 5 HELIX 29 AD2 THR B 445 LEU B 460 1 16 HELIX 30 AD3 GLN B 469 LEU B 474 1 6 SHEET 1 AA1 6 LYS A 154 TRP A 155 0 SHEET 2 AA1 6 TYR A 159 GLY A 168 -1 O TYR A 159 N TRP A 155 SHEET 3 AA1 6 GLY A 171 ASP A 178 -1 O LYS A 175 N ASP A 162 SHEET 4 AA1 6 GLU A 183 ILE A 190 -1 O VAL A 185 N ALA A 176 SHEET 5 AA1 6 HIS A 233 GLU A 239 -1 O PHE A 238 N ALA A 186 SHEET 6 AA1 6 LEU A 224 PHE A 230 -1 N ARG A 226 O VAL A 237 SHEET 1 AA2 2 ILE A 283 ILE A 284 0 SHEET 2 AA2 2 CYS A 312 GLN A 313 -1 O CYS A 312 N ILE A 284 SHEET 1 AA3 2 ILE A 293 LEU A 295 0 SHEET 2 AA3 2 ILE A 303 ILE A 305 -1 O LYS A 304 N LEU A 294 SHEET 1 AA4 2 PHE A 395 LYS A 397 0 SHEET 2 AA4 2 TRP A 403 LEU A 405 -1 O ASN A 404 N GLU A 396 SHEET 1 AA5 6 LYS B 154 TRP B 155 0 SHEET 2 AA5 6 TYR B 159 LYS B 167 -1 O TYR B 159 N TRP B 155 SHEET 3 AA5 6 GLY B 171 ASP B 178 -1 O VAL B 173 N GLY B 166 SHEET 4 AA5 6 GLU B 183 ILE B 190 -1 O VAL B 185 N ALA B 176 SHEET 5 AA5 6 LEU B 234 GLU B 239 -1 O PHE B 238 N ALA B 186 SHEET 6 AA5 6 LEU B 224 MET B 229 -1 N PHE B 228 O CYS B 235 SHEET 1 AA6 2 ILE B 283 ILE B 284 0 SHEET 2 AA6 2 CYS B 312 GLN B 313 -1 O CYS B 312 N ILE B 284 SHEET 1 AA7 2 ILE B 293 LEU B 295 0 SHEET 2 AA7 2 ILE B 303 ILE B 305 -1 O LYS B 304 N LEU B 294 SHEET 1 AA8 2 PHE B 395 LYS B 397 0 SHEET 2 AA8 2 TRP B 403 LEU B 405 -1 O ASN B 404 N GLU B 396 LINK C GLN A 320 N PTR A 321 1555 1555 1.34 LINK C PTR A 321 N ILE A 322 1555 1555 1.32 LINK C GLN B 320 N PTR B 321 1555 1555 1.32 LINK C PTR B 321 N ILE B 322 1555 1555 1.32 CRYST1 132.126 132.126 90.485 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007569 0.004370 0.000000 0.00000 SCALE2 0.000000 0.008739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011052 0.00000