HEADER CELL ADHESION 29-DEC-22 8C3Y TITLE HB3VAR03 APO HEADSTRUCTURE (PFEMP1 A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PFEMP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM HB3; SOURCE 3 ORGANISM_TAXID: 137071; SOURCE 4 GENE: PFHG_05052; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS PLASMODIUM FALCIPARUM, CEREBRAL MALARIA, PFEMP1, EPCR, CELL ADHESION EXPDTA ELECTRON MICROSCOPY AUTHOR S.S.R.RAGHAVAN,T.LAVSTSEN,K.T.WANG REVDAT 2 27-DEC-23 8C3Y 1 JRNL REVDAT 1 02-AUG-23 8C3Y 0 JRNL AUTH S.S.RAJAN RAGHAVAN,L.TURNER,R.W.JENSEN,N.T.JOHANSEN, JRNL AUTH 2 D.S.JENSEN,P.GOURDON,J.ZHANG,Y.WANG,T.G.THEANDER,K.WANG, JRNL AUTH 3 T.LAVSTSEN JRNL TITL ENDOTHELIAL PROTEIN C RECEPTOR BINDING INDUCES JRNL TITL 2 CONFORMATIONAL CHANGES TO SEVERE MALARIA-ASSOCIATED GROUP A JRNL TITL 3 PFEMP1. JRNL REF STRUCTURE V. 31 1174 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 37582356 JRNL DOI 10.1016/J.STR.2023.07.011 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.800 REMARK 3 NUMBER OF PARTICLES : 750035 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8C3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127725. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : MULTIDOMAIN ARCHITECTURE OF REMARK 245 PFEMP1 A REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4800.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 47 REMARK 465 LYS A 48 REMARK 465 GLY A 49 REMARK 465 ASN A 50 REMARK 465 LEU A 51 REMARK 465 LYS A 52 REMARK 465 ASP A 53 REMARK 465 ALA A 54 REMARK 465 LYS A 55 REMARK 465 PHE A 56 REMARK 465 ASN A 57 REMARK 465 HIS A 58 REMARK 465 ASP A 59 REMARK 465 PHE A 60 REMARK 465 PHE A 61 REMARK 465 LYS A 62 REMARK 465 ILE A 63 REMARK 465 LYS A 64 REMARK 465 SER A 65 REMARK 465 ASP A 66 REMARK 465 MET A 67 REMARK 465 PRO A 68 REMARK 465 GLY A 69 REMARK 465 ASN A 70 REMARK 465 PRO A 71 REMARK 465 CYS A 72 REMARK 465 TYR A 73 REMARK 465 LEU A 74 REMARK 465 ASP A 75 REMARK 465 PHE A 76 REMARK 465 ALA A 77 REMARK 465 PHE A 78 REMARK 465 HIS A 79 REMARK 465 SER A 80 REMARK 465 ASN A 81 REMARK 465 THR A 82 REMARK 465 PRO A 83 REMARK 465 GLY A 84 REMARK 465 ASN A 85 REMARK 465 GLN A 86 REMARK 465 ARG A 87 REMARK 465 GLU A 88 REMARK 465 TYR A 89 REMARK 465 ARG A 90 REMARK 465 LEU A 203 REMARK 465 GLY A 204 REMARK 465 HIS A 205 REMARK 465 GLU A 206 REMARK 465 GLN A 207 REMARK 465 GLY A 208 REMARK 465 ASN A 209 REMARK 465 ASN A 210 REMARK 465 TRP A 345 REMARK 465 LYS A 346 REMARK 465 LYS A 347 REMARK 465 GLY A 348 REMARK 465 VAL A 349 REMARK 465 LEU A 350 REMARK 465 HIS A 351 REMARK 465 ARG A 352 REMARK 465 SER A 353 REMARK 465 LYS A 408 REMARK 465 GLU A 409 REMARK 465 PHE A 410 REMARK 465 TYR A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 438 REMARK 465 GLU A 439 REMARK 465 LYS A 440 REMARK 465 ILE A 441 REMARK 465 GLU A 442 REMARK 465 GLU A 443 REMARK 465 GLU A 444 REMARK 465 GLU A 445 REMARK 465 GLU A 473 REMARK 465 CYS A 474 REMARK 465 LYS A 475 REMARK 465 ASN A 476 REMARK 465 GLU A 477 REMARK 465 THR A 478 REMARK 465 CYS A 479 REMARK 465 THR A 480 REMARK 465 PRO A 481 REMARK 465 LYS A 482 REMARK 465 THR A 483 REMARK 465 VAL A 484 REMARK 465 ILE A 485 REMARK 465 TYR A 486 REMARK 465 PRO A 487 REMARK 465 CYS A 489 REMARK 465 GLY A 490 REMARK 465 LYS A 491 REMARK 465 ASN A 492 REMARK 465 GLU A 493 REMARK 465 LYS A 494 REMARK 465 SER A 722 REMARK 465 VAL A 723 REMARK 465 ASP A 724 REMARK 465 SER A 725 REMARK 465 LYS A 726 REMARK 465 THR A 727 REMARK 465 ASN A 728 REMARK 465 SER A 729 REMARK 465 CYS A 730 REMARK 465 GLY A 731 REMARK 465 LYS A 732 REMARK 465 ASN A 733 REMARK 465 THR A 734 REMARK 465 LYS A 735 REMARK 465 ALA A 736 REMARK 465 GLY A 737 REMARK 465 SER A 738 REMARK 465 THR A 776 REMARK 465 TYR A 777 REMARK 465 LYS A 778 REMARK 465 LYS A 779 REMARK 465 ASN A 780 REMARK 465 GLY A 781 REMARK 465 THR A 782 REMARK 465 PRO A 783 REMARK 465 SER A 784 REMARK 465 ASN A 785 REMARK 465 LEU A 786 REMARK 465 LYS A 787 REMARK 465 GLU A 788 REMARK 465 ILE A 789 REMARK 465 CYS A 790 REMARK 465 GLU A 791 REMARK 465 ILE A 792 REMARK 465 THR A 793 REMARK 465 ALA A 794 REMARK 465 LYS A 795 REMARK 465 HIS A 796 REMARK 465 SER A 797 REMARK 465 ASN A 798 REMARK 465 ASP A 799 REMARK 465 SER A 800 REMARK 465 ARG A 801 REMARK 465 ARG A 802 REMARK 465 ASP A 803 REMARK 465 GLY A 804 REMARK 465 GLU A 805 REMARK 465 PRO A 806 REMARK 465 CYS A 807 REMARK 465 THR A 808 REMARK 465 GLY A 809 REMARK 465 LYS A 810 REMARK 465 ASP A 811 REMARK 465 GLY A 812 REMARK 465 GLY A 813 REMARK 465 GLN A 814 REMARK 465 VAL A 815 REMARK 465 ARG A 816 REMARK 465 VAL A 817 REMARK 465 ARG A 818 REMARK 465 THR A 819 REMARK 465 LYS A 820 REMARK 465 ILE A 821 REMARK 465 GLY A 822 REMARK 465 THR A 823 REMARK 465 PRO A 824 REMARK 465 TRP A 825 REMARK 465 THR A 826 REMARK 465 LYS A 827 REMARK 465 ILE A 828 REMARK 465 VAL A 829 REMARK 465 GLU A 830 REMARK 465 ILE A 831 REMARK 465 ASN A 832 REMARK 465 LYS A 833 REMARK 465 THR A 834 REMARK 465 SER A 835 REMARK 465 TYR A 836 REMARK 465 LYS A 837 REMARK 465 GLU A 838 REMARK 465 LEU A 856 REMARK 465 ASN A 857 REMARK 465 THR A 858 REMARK 465 GLY A 859 REMARK 465 ASN A 860 REMARK 465 LYS A 861 REMARK 465 GLY A 862 REMARK 465 LEU A 863 REMARK 465 LYS A 864 REMARK 465 ASP A 865 REMARK 465 GLY A 866 REMARK 465 LYS A 867 REMARK 465 CYS A 1041 REMARK 465 LYS A 1042 REMARK 465 GLU A 1043 REMARK 465 CYS A 1044 REMARK 465 LYS A 1045 REMARK 465 GLY A 1046 REMARK 465 ASN A 1047 REMARK 465 ASP A 1048 REMARK 465 GLN A 1049 REMARK 465 CYS A 1050 REMARK 465 THR A 1051 REMARK 465 GLN A 1052 REMARK 465 ASP A 1053 REMARK 465 THR A 1054 REMARK 465 PRO A 1055 REMARK 465 ASP A 1056 REMARK 465 TYR A 1104 REMARK 465 ASN A 1105 REMARK 465 THR A 1106 REMARK 465 LYS A 1107 REMARK 465 VAL A 1108 REMARK 465 GLN A 1109 REMARK 465 GLU A 1110 REMARK 465 GLU A 1111 REMARK 465 PRO A 1133 REMARK 465 PRO A 1134 REMARK 465 ASP A 1135 REMARK 465 THR A 1136 REMARK 465 HIS A 1137 REMARK 465 PRO A 1138 REMARK 465 SER A 1139 REMARK 465 LYS A 1140 REMARK 465 SER A 1141 REMARK 465 VAL A 1142 REMARK 465 THR A 1143 REMARK 465 ALA A 1144 REMARK 465 PRO A 1145 REMARK 465 LEU A 1146 REMARK 465 LYS A 1147 REMARK 465 GLN A 1148 REMARK 465 VAL A 1149 REMARK 465 ALA A 1150 REMARK 465 THR A 1151 REMARK 465 VAL A 1152 REMARK 465 ASP A 1153 REMARK 465 GLU A 1169 REMARK 465 ALA A 1170 REMARK 465 ALA A 1171 REMARK 465 MET A 1172 REMARK 465 ASP A 1173 REMARK 465 CYS A 1174 REMARK 465 LYS A 1175 REMARK 465 GLN A 1176 REMARK 465 GLN A 1177 REMARK 465 HIS A 1178 REMARK 465 VAL A 1179 REMARK 465 PHE A 1180 REMARK 465 CYS A 1181 REMARK 465 ASP A 1182 REMARK 465 ASP A 1183 REMARK 465 ASN A 1184 REMARK 465 SER A 1185 REMARK 465 GLY A 1186 REMARK 465 GLY A 1187 REMARK 465 LYS A 1188 REMARK 465 ASP A 1189 REMARK 465 ASP A 1190 REMARK 465 ASN A 1191 REMARK 465 LYS A 1192 REMARK 465 GLN A 1193 REMARK 465 TYR A 1194 REMARK 465 ALA A 1195 REMARK 465 PHE A 1196 REMARK 465 ARG A 1197 REMARK 465 HIS A 1198 REMARK 465 GLN A 1199 REMARK 465 PRO A 1200 REMARK 465 HIS A 1201 REMARK 465 ASP A 1202 REMARK 465 TYR A 1203 REMARK 465 ASP A 1204 REMARK 465 GLU A 1205 REMARK 465 ALA A 1206 REMARK 465 LEU A 1207 REMARK 465 ARG A 1208 REMARK 465 CYS A 1209 REMARK 465 ASP A 1210 REMARK 465 GLN A 1211 REMARK 465 ARG A 1212 REMARK 465 ASP A 1213 REMARK 465 LYS A 1214 REMARK 465 PRO A 1215 REMARK 465 PRO A 1216 REMARK 465 PRO A 1217 REMARK 465 GLU A 1218 REMARK 465 SER A 1219 REMARK 465 LYS A 1220 REMARK 465 LYS A 1221 REMARK 465 VAL A 1222 REMARK 465 GLU A 1223 REMARK 465 LYS A 1224 REMARK 465 ALA A 1225 REMARK 465 LYS A 1226 REMARK 465 LYS A 1227 REMARK 465 GLU A 1228 REMARK 465 LYS A 1229 REMARK 465 ASP A 1230 REMARK 465 GLU A 1231 REMARK 465 ASN A 1232 REMARK 465 ASP A 1233 REMARK 465 ASP A 1234 REMARK 465 GLY A 1235 REMARK 465 GLY A 1236 REMARK 465 SER A 1237 REMARK 465 HIS A 1238 REMARK 465 HIS A 1239 REMARK 465 HIS A 1240 REMARK 465 HIS A 1241 REMARK 465 HIS A 1242 REMARK 465 HIS A 1243 REMARK 465 GLY A 1244 REMARK 465 GLY A 1245 REMARK 465 GLY A 1246 REMARK 465 SER A 1247 REMARK 465 ALA A 1248 REMARK 465 HIS A 1249 REMARK 465 ILE A 1250 REMARK 465 VAL A 1251 REMARK 465 MET A 1252 REMARK 465 VAL A 1253 REMARK 465 ASP A 1254 REMARK 465 ALA A 1255 REMARK 465 TYR A 1256 REMARK 465 LYS A 1257 REMARK 465 PRO A 1258 REMARK 465 THR A 1259 REMARK 465 LYS A 1260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 191 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 240 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 248 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 580 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TYR A 643 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR A 644 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 753 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 753 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR A1120 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 18 -134.38 -106.70 REMARK 500 LYS A 19 -64.94 72.17 REMARK 500 SER A 20 75.58 45.62 REMARK 500 GLU A 119 0.26 -58.88 REMARK 500 ASN A 175 -113.39 -128.61 REMARK 500 ARG A 176 -176.00 81.74 REMARK 500 TYR A 406 137.56 75.61 REMARK 500 ILE A 413 -49.14 71.49 REMARK 500 TYR A 419 58.00 -100.72 REMARK 500 SER A 461 141.68 -36.43 REMARK 500 PRO A 498 66.73 -68.82 REMARK 500 LYS A 514 -60.87 -145.06 REMARK 500 TYR A 517 78.42 68.20 REMARK 500 SER A 523 -128.67 52.51 REMARK 500 GLU A 524 -58.30 -16.34 REMARK 500 ASP A 601 -131.32 47.88 REMARK 500 LEU A 645 -144.98 51.61 REMARK 500 ASN A 646 -45.81 69.30 REMARK 500 LEU A 650 13.28 -68.61 REMARK 500 PHE A 655 -59.23 72.15 REMARK 500 GLU A 666 -116.56 46.73 REMARK 500 THR A 689 70.39 173.49 REMARK 500 HIS A1005 174.11 76.58 REMARK 500 LYS A1130 87.63 -68.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A1017 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-16415 RELATED DB: EMDB REMARK 900 HB3VAR03 APO HEADSTRUCTURE (PFEMP1 A) DBREF1 8C3Y A 1 1234 UNP A0A0L7KL67_PLAFX DBREF2 8C3Y A A0A0L7KL67 1 1234 SEQADV 8C3Y ALA A 2 UNP A0A0L7KL6 GLY 2 CONFLICT SEQADV 8C3Y GLY A 1235 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y GLY A 1236 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y SER A 1237 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y HIS A 1238 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y HIS A 1239 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y HIS A 1240 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y HIS A 1241 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y HIS A 1242 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y HIS A 1243 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y GLY A 1244 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y GLY A 1245 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y GLY A 1246 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y SER A 1247 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y ALA A 1248 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y HIS A 1249 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y ILE A 1250 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y VAL A 1251 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y MET A 1252 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y VAL A 1253 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y ASP A 1254 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y ALA A 1255 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y TYR A 1256 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y LYS A 1257 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y PRO A 1258 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y THR A 1259 UNP A0A0L7KL6 EXPRESSION TAG SEQADV 8C3Y LYS A 1260 UNP A0A0L7KL6 EXPRESSION TAG SEQRES 1 A 1260 MET ALA SER SER ALA SER LYS PHE SER LYS ILE VAL VAL SEQRES 2 A 1260 GLY ASN GLU THR HIS LYS SER ALA ARG ASN VAL LEU GLU SEQRES 3 A 1260 GLY PHE ALA LYS ASP ILE LYS GLY LYS ALA SER ILE ASP SEQRES 4 A 1260 ALA GLU LYS HIS ALA TYR SER LEU LYS GLY ASN LEU LYS SEQRES 5 A 1260 ASP ALA LYS PHE ASN HIS ASP PHE PHE LYS ILE LYS SER SEQRES 6 A 1260 ASP MET PRO GLY ASN PRO CYS TYR LEU ASP PHE ALA PHE SEQRES 7 A 1260 HIS SER ASN THR PRO GLY ASN GLN ARG GLU TYR ARG HIS SEQRES 8 A 1260 PRO CYS ALA ARG SER MET ASN LYS ASN LEU PHE ASN LEU SEQRES 9 A 1260 GLU GLY ALA VAL CYS THR ASN SER LYS ILE LYS GLY ASN SEQRES 10 A 1260 GLU GLU LYS ILE ASN GLY ALA GLY ALA CYS ALA PRO TYR SEQRES 11 A 1260 ARG ARG ARG HIS ILE CYS ASP LEU ASN LEU GLU HIS ILE SEQRES 12 A 1260 ASP VAL HIS ASN VAL GLN ASN ILE HIS ASP LEU LEU GLY SEQRES 13 A 1260 ASN VAL LEU VAL THR ALA LYS TYR GLU GLY GLU SER ILE SEQRES 14 A 1260 VAL GLU LYS HIS PRO ASN ARG GLY SER SER GLU VAL CYS SEQRES 15 A 1260 THR ALA LEU ALA ARG SER PHE ALA ASP ILE GLY ASP ILE SEQRES 16 A 1260 ILE ARG GLY LYS ASP LEU TYR LEU GLY HIS GLU GLN GLY SEQRES 17 A 1260 ASN ASN LYS LEU GLU ALA ARG LEU LYS THR ILE PHE GLN SEQRES 18 A 1260 ASN ILE LYS ASN LYS ASN LYS SER PRO LEU ASP LYS LEU SEQRES 19 A 1260 SER LEU GLU GLN VAL ARG GLU TYR TRP TRP ALA LEU ASN SEQRES 20 A 1260 ARG GLU ASP VAL TRP LYS ALA LEU THR CYS PHE ALA ASP SEQRES 21 A 1260 GLY SER GLU GLU TYR PHE ILE GLN SER SER ASP LYS GLU SEQRES 22 A 1260 HIS SER PHE SER SER GLU TYR CYS GLY HIS GLU GLN GLY SEQRES 23 A 1260 ASN VAL PRO THR ASN LEU ASP TYR VAL PRO GLN PHE LEU SEQRES 24 A 1260 ARG TRP PHE ASP GLU TRP ALA ASP ASP PHE CYS ARG ILE SEQRES 25 A 1260 LYS LYS ILE LYS LEU GLU ASN VAL LYS ASN ALA CYS ARG SEQRES 26 A 1260 ASP GLU LYS LYS ARG LYS TYR CYS SER LEU ASN GLY PHE SEQRES 27 A 1260 ASP CYS THR GLN THR ILE TRP LYS LYS GLY VAL LEU HIS SEQRES 28 A 1260 ARG SER ASN GLU CYS THR GLY CYS LEU VAL LYS CYS ASN SEQRES 29 A 1260 PRO TYR GLU ILE TRP LEU GLY ASN GLN ARG GLU ALA PHE SEQRES 30 A 1260 ARG LYS GLN LYS GLU LYS TYR GLU ASN GLU ILE LYS THR SEQRES 31 A 1260 TYR VAL HIS ASP THR GLY ILE SER ASN SER ASN ILE ASN SEQRES 32 A 1260 ASN GLU TYR TYR LYS GLU PHE TYR LYS ILE LEU LYS ASN SEQRES 33 A 1260 ASN ASN TYR GLU THR ALA ASN GLU PHE ILE LYS LEU LEU SEQRES 34 A 1260 ASN GLU GLY ARG TYR CYS ASN LYS LYS GLU LYS ILE GLU SEQRES 35 A 1260 GLU GLU GLU ASP ILE ASP PHE THR ASN THR ASN GLU LYS SEQRES 36 A 1260 GLY THR PHE TYR ARG SER ASP TYR CYS GLN VAL CYS PRO SEQRES 37 A 1260 ASP CYS GLY VAL GLU CYS LYS ASN GLU THR CYS THR PRO SEQRES 38 A 1260 LYS THR VAL ILE TYR PRO ASP CYS GLY LYS ASN GLU LYS SEQRES 39 A 1260 TYR GLU PRO PRO GLY ASP ALA LYS ASN THR GLU ILE ASN SEQRES 40 A 1260 VAL ILE ASN SER GLY ASP LYS GLU GLY TYR ILE PHE GLU SEQRES 41 A 1260 LYS LEU SER GLU PHE CYS THR ASN GLU ASN ASN GLU ASN SEQRES 42 A 1260 GLY LYS ASN TYR GLU GLN TRP LYS CYS TYR TYR ASP ASN SEQRES 43 A 1260 LYS LYS ASN ASN ASN LYS CYS LYS MET GLU ILE ASN ILE SEQRES 44 A 1260 ALA ASN SER LYS LEU LYS ASN LYS ILE THR SER PHE ASP SEQRES 45 A 1260 GLU PHE PHE ASP PHE TRP VAL ARG LYS LEU LEU ILE ASP SEQRES 46 A 1260 THR ILE LYS TRP GLU THR GLU LEU THR TYR CYS ILE ASN SEQRES 47 A 1260 ASN THR ASP VAL THR ASP CYS ASN LYS CYS ASN LYS ASN SEQRES 48 A 1260 CYS VAL CYS PHE ASP LYS TRP VAL LYS GLN LYS GLU ASP SEQRES 49 A 1260 GLU TRP THR ASN ILE MET LYS LEU PHE THR ASN LYS HIS SEQRES 50 A 1260 ASP ILE PRO LYS LYS TYR TYR LEU ASN ILE ASN ASP LEU SEQRES 51 A 1260 PHE ASP SER PHE PHE PHE GLN VAL ILE TYR LYS PHE ASN SEQRES 52 A 1260 GLU GLY GLU ALA LYS TRP ASN GLU LEU LYS GLU ASN LEU SEQRES 53 A 1260 LYS LYS GLN ILE ALA SER SER LYS ALA ASN ASN GLY THR SEQRES 54 A 1260 LYS ASP SER GLU ALA ALA ILE LYS VAL LEU PHE ASN HIS SEQRES 55 A 1260 ILE LYS GLU ILE ALA THR ILE CYS LYS ASP ASN ASN THR SEQRES 56 A 1260 ASN GLU GLY CYS ASP PRO SER VAL ASP SER LYS THR ASN SEQRES 57 A 1260 SER CYS GLY LYS ASN THR LYS ALA GLY SER ASP LYS VAL SEQRES 58 A 1260 ILE SER VAL LYS GLN ILE ALA GLN TYR TYR LYS ARG ILE SEQRES 59 A 1260 ALA HIS LYS GLN LEU ASN GLU ARG GLY SER ARG SER ALA SEQRES 60 A 1260 LEU LYS GLY ASP ALA SER LYS GLY THR TYR LYS LYS ASN SEQRES 61 A 1260 GLY THR PRO SER ASN LEU LYS GLU ILE CYS GLU ILE THR SEQRES 62 A 1260 ALA LYS HIS SER ASN ASP SER ARG ARG ASP GLY GLU PRO SEQRES 63 A 1260 CYS THR GLY LYS ASP GLY GLY GLN VAL ARG VAL ARG THR SEQRES 64 A 1260 LYS ILE GLY THR PRO TRP THR LYS ILE VAL GLU ILE ASN SEQRES 65 A 1260 LYS THR SER TYR LYS GLU VAL PHE LEU PRO PRO ARG ARG SEQRES 66 A 1260 GLN HIS MET CYS THR SER ASN LEU GLU HIS LEU ASN THR SEQRES 67 A 1260 GLY ASN LYS GLY LEU LYS ASP GLY LYS LEU ALA ILE HIS SEQRES 68 A 1260 SER LEU LEU GLY ASP VAL LEU LEU ALA ALA LYS GLU GLN SEQRES 69 A 1260 ALA ASN PHE ILE LYS ASN LYS TYR LYS ARG GLN LYS ALA SEQRES 70 A 1260 SER ASN GLY PHE LYS ASP LYS GLY THR ILE CYS ARG ALA SEQRES 71 A 1260 ILE ARG TYR SER TYR ALA ASP LEU GLY ASP ILE ILE LYS SEQRES 72 A 1260 GLY THR ASP LEU TRP GLU ALA ASN PRO GLY GLU LYS ASN SEQRES 73 A 1260 THR GLN ARG ARG LEU LYS THR VAL PHE GLY ILE ILE LYS SEQRES 74 A 1260 LYS ASN MET PRO GLY ILE LYS ASP ASN GLN LYS TYR LYS SEQRES 75 A 1260 ASP ASP GLU LYS ASN ASN PRO PRO TYR LYS LEU LEU ARG SEQRES 76 A 1260 GLU ASP TRP TRP GLU ALA ASN ARG ASP GLN VAL TRP GLN SEQRES 77 A 1260 ALA MET LYS CYS ALA MET LYS ASN GLY ILE THR CYS GLY SEQRES 78 A 1260 SER SER ASP HIS THR PRO LEU ASP ASP TYR ILE PRO GLN SEQRES 79 A 1260 LYS LEU ARG TRP LEU THR GLU TRP ALA GLU TRP TYR CYS SEQRES 80 A 1260 LYS ALA GLN SER LYS GLU TYR GLU LYS LEU LYS GLU LYS SEQRES 81 A 1260 CYS LYS GLU CYS LYS GLY ASN ASP GLN CYS THR GLN ASP SEQRES 82 A 1260 THR PRO ASP CYS GLU LYS CYS LYS ALA ALA CYS LYS LYS SEQRES 83 A 1260 TYR GLY LYS ASN ILE LYS THR TRP GLU ASP GLN TRP LYS SEQRES 84 A 1260 VAL ILE SER SER LYS TYR LYS GLU LEU TYR LYS GLN ALA SEQRES 85 A 1260 GLU ILE TYR ALA GLY ASN GLY GLY PRO GLY TYR TYR ASN SEQRES 86 A 1260 THR LYS VAL GLN GLU GLU ASP LYS PRO VAL VAL ASP PHE SEQRES 87 A 1260 LEU TYR ASN LEU TYR LEU GLN ASN GLY GLY LYS LYS GLY SEQRES 88 A 1260 PRO PRO PRO ASP THR HIS PRO SER LYS SER VAL THR ALA SEQRES 89 A 1260 PRO LEU LYS GLN VAL ALA THR VAL ASP THR PRO SER THR SEQRES 90 A 1260 VAL TYR SER THR PRO GLU GLY TYR ILE HIS GLN GLU ALA SEQRES 91 A 1260 ALA MET ASP CYS LYS GLN GLN HIS VAL PHE CYS ASP ASP SEQRES 92 A 1260 ASN SER GLY GLY LYS ASP ASP ASN LYS GLN TYR ALA PHE SEQRES 93 A 1260 ARG HIS GLN PRO HIS ASP TYR ASP GLU ALA LEU ARG CYS SEQRES 94 A 1260 ASP GLN ARG ASP LYS PRO PRO PRO GLU SER LYS LYS VAL SEQRES 95 A 1260 GLU LYS ALA LYS LYS GLU LYS ASP GLU ASN ASP ASP GLY SEQRES 96 A 1260 GLY SER HIS HIS HIS HIS HIS HIS GLY GLY GLY SER ALA SEQRES 97 A 1260 HIS ILE VAL MET VAL ASP ALA TYR LYS PRO THR LYS HELIX 1 AA1 SER A 20 LYS A 42 1 23 HELIX 2 AA2 HIS A 91 MET A 97 5 7 HELIX 3 AA3 PRO A 129 HIS A 134 1 6 HELIX 4 AA4 ASP A 137 HIS A 142 1 6 HELIX 5 AA5 ASN A 150 LYS A 172 1 23 HELIX 6 AA6 SER A 179 ARG A 197 1 19 HELIX 7 AA7 LEU A 212 ASN A 227 1 16 HELIX 8 AA8 ASN A 227 ASP A 232 1 6 HELIX 9 AA9 SER A 235 THR A 256 1 22 HELIX 10 AB1 PRO A 296 CYS A 324 1 29 HELIX 11 AB2 GLU A 327 ARG A 330 5 4 HELIX 12 AB3 CYS A 356 HIS A 393 1 38 HELIX 13 AB4 ILE A 413 ASN A 418 5 6 HELIX 14 AB5 THR A 421 GLU A 431 1 11 HELIX 15 AB6 TYR A 517 SER A 523 1 7 HELIX 16 AB7 SER A 523 ASN A 528 1 6 HELIX 17 AB8 PHE A 571 LEU A 593 1 23 HELIX 18 AB9 LEU A 593 ASN A 598 1 6 HELIX 19 AC1 ASP A 604 LYS A 631 1 28 HELIX 20 AC2 PRO A 640 TYR A 644 5 5 HELIX 21 AC3 ASN A 648 PHE A 654 5 7 HELIX 22 AC4 PHE A 655 ILE A 659 5 5 HELIX 23 AC5 GLU A 666 ASN A 686 1 21 HELIX 24 AC6 LYS A 690 ASN A 713 1 24 HELIX 25 AC7 ASN A 714 CYS A 719 5 6 HELIX 26 AC8 SER A 743 GLY A 763 1 21 HELIX 27 AC9 SER A 764 LYS A 769 1 6 HELIX 28 AD1 ARG A 844 MET A 848 5 5 HELIX 29 AD2 ALA A 869 TYR A 892 1 24 HELIX 30 AD3 LYS A 904 GLY A 924 1 21 HELIX 31 AD4 ASN A 931 MET A 952 1 22 HELIX 32 AD5 GLY A 954 LYS A 962 5 9 HELIX 33 AD6 ASP A 963 ASN A 967 5 5 HELIX 34 AD7 TYR A 971 MET A 994 1 24 HELIX 35 AD8 PRO A 1013 LYS A 1040 1 28 HELIX 36 AD9 GLU A 1058 GLY A 1097 1 40 HELIX 37 AE1 LYS A 1113 ASN A 1126 1 14 SHEET 1 AA1 2 PHE A 266 ILE A 267 0 SHEET 2 AA1 2 SER A 275 PHE A 276 -1 O SER A 275 N ILE A 267 SHEET 1 AA2 2 ARG A 325 ASP A 326 0 SHEET 2 AA2 2 LYS A 331 TYR A 332 -1 O LYS A 331 N ASP A 326 SHEET 1 AA3 4 ASN A 503 ILE A 509 0 SHEET 2 AA3 4 TYR A 537 TYR A 543 -1 O CYS A 542 N THR A 504 SHEET 3 AA3 4 LYS A 552 ILE A 557 -1 O GLU A 556 N GLN A 539 SHEET 4 AA3 4 ILE A 568 SER A 570 -1 O THR A 569 N CYS A 553 SSBOND 1 CYS A 93 CYS A 136 1555 1555 2.03 SSBOND 2 CYS A 109 CYS A 127 1555 1555 2.03 SSBOND 3 CYS A 182 CYS A 281 1555 1555 2.02 SSBOND 4 CYS A 310 CYS A 435 1555 1555 2.02 SSBOND 5 CYS A 324 CYS A 359 1555 1555 2.04 SSBOND 6 CYS A 333 CYS A 356 1555 1555 2.04 SSBOND 7 CYS A 340 CYS A 467 1555 1555 2.03 SSBOND 8 CYS A 363 CYS A 464 1555 1555 2.05 SSBOND 9 CYS A 526 CYS A 614 1555 1555 2.02 SSBOND 10 CYS A 542 CYS A 553 1555 1555 2.09 SSBOND 11 CYS A 596 CYS A 608 1555 1555 2.04 SSBOND 12 CYS A 605 CYS A 719 1555 1555 2.04 SSBOND 13 CYS A 612 CYS A 710 1555 1555 2.03 SSBOND 14 CYS A 908 CYS A 1000 1555 1555 2.03 CISPEP 1 SER A 229 PRO A 230 0 -3.21 CISPEP 2 ASN A 968 PRO A 969 0 2.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000