HEADER PROTEIN BINDING 04-JAN-23 8C4O TITLE CDAA-ATP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIADENYLATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DAC,CYCLIC-DI-AMP SYNTHASE,C-DI-AMP SYNTHASE,DIADENYLATE COMPND 5 CYCLASE CDAA; COMPND 6 EC: 2.7.7.85; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: DACA, CDAA, LMO2120; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.NEUMANN,R.FICNER REVDAT 2 19-JUN-24 8C4O 1 JRNL REVDAT 1 07-JUN-23 8C4O 0 JRNL AUTH P.NEUMANN,P.KLOSKOWSKI,R.FICNER JRNL TITL COMPUTER-AIDED DESIGN OF A CYCLIC DI-AMP SYNTHESIZING ENZYME JRNL TITL 2 CDAA INHIBITOR. JRNL REF MICROLIFE V. 4 AD021 2023 JRNL REFN ESSN 2633-6693 JRNL PMID 37223749 JRNL DOI 10.1093/FEMSML/UQAD021 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7300 - 4.1000 1.00 2918 154 0.1820 0.1942 REMARK 3 2 4.1000 - 3.2500 1.00 2760 145 0.1999 0.2305 REMARK 3 3 3.2500 - 2.8400 1.00 2736 145 0.2500 0.2820 REMARK 3 4 2.8400 - 2.5800 1.00 2740 145 0.2713 0.2817 REMARK 3 5 2.5800 - 2.4000 1.00 2708 141 0.2753 0.2952 REMARK 3 6 2.4000 - 2.2600 1.00 2706 143 0.3297 0.3834 REMARK 3 7 2.2600 - 2.1400 0.99 2683 142 0.3867 0.4153 REMARK 3 8 2.1400 - 2.0500 1.00 2693 141 0.4549 0.4233 REMARK 3 9 2.0500 - 1.9700 1.00 2690 143 0.5188 0.5392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.298 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2441 REMARK 3 ANGLE : 1.102 3316 REMARK 3 CHIRALITY : 0.077 397 REMARK 3 PLANARITY : 0.011 412 REMARK 3 DIHEDRAL : 15.258 904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0000 -0.0842 -6.0228 REMARK 3 T TENSOR REMARK 3 T11: 0.7595 T22: 0.6803 REMARK 3 T33: 0.6018 T12: -0.0448 REMARK 3 T13: -0.1142 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 4.7271 L22: 3.3774 REMARK 3 L33: 3.2132 L12: -0.1054 REMARK 3 L13: -0.8000 L23: 0.0706 REMARK 3 S TENSOR REMARK 3 S11: -0.1569 S12: -0.4999 S13: -0.0750 REMARK 3 S21: 0.7418 S22: 0.1017 S23: -0.0204 REMARK 3 S31: 0.0358 S32: -0.4560 S33: -0.0044 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9130 4.0345 -17.7029 REMARK 3 T TENSOR REMARK 3 T11: 0.5801 T22: 0.5665 REMARK 3 T33: 0.4574 T12: -0.0098 REMARK 3 T13: -0.0120 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.2911 L22: 5.5470 REMARK 3 L33: 2.4901 L12: 0.7377 REMARK 3 L13: 0.6505 L23: 0.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: 0.1583 S13: 0.0248 REMARK 3 S21: -0.4385 S22: 0.1422 S23: -0.2208 REMARK 3 S31: -0.3073 S32: -0.1050 S33: -0.0465 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0852 11.6585 -5.2184 REMARK 3 T TENSOR REMARK 3 T11: 0.8245 T22: 0.6080 REMARK 3 T33: 0.6282 T12: 0.0756 REMARK 3 T13: -0.0408 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 2.9376 L22: 2.6435 REMARK 3 L33: 4.1301 L12: 1.2606 REMARK 3 L13: -1.6841 L23: -0.6919 REMARK 3 S TENSOR REMARK 3 S11: 0.5738 S12: -0.1751 S13: 0.2252 REMARK 3 S21: 0.3211 S22: -0.3043 S23: -0.0350 REMARK 3 S31: -0.7673 S32: 0.0988 S33: -0.1176 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0500 -22.0271 -26.1200 REMARK 3 T TENSOR REMARK 3 T11: 0.6463 T22: 0.6453 REMARK 3 T33: 0.5967 T12: 0.0025 REMARK 3 T13: 0.0313 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 6.8657 L22: 3.7234 REMARK 3 L33: 4.3939 L12: -0.1875 REMARK 3 L13: 1.1857 L23: 0.5578 REMARK 3 S TENSOR REMARK 3 S11: 0.1693 S12: 1.2165 S13: 0.0356 REMARK 3 S21: -0.6051 S22: -0.0242 S23: 0.0682 REMARK 3 S31: -0.1315 S32: -0.1825 S33: 0.1496 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7438 -26.1017 -13.2491 REMARK 3 T TENSOR REMARK 3 T11: 0.5385 T22: 0.5466 REMARK 3 T33: 0.5541 T12: -0.0001 REMARK 3 T13: -0.1294 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 3.3335 L22: 3.9342 REMARK 3 L33: 3.5294 L12: -0.1185 REMARK 3 L13: 1.1159 L23: 0.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.1179 S12: -0.4018 S13: 0.1410 REMARK 3 S21: 0.4029 S22: 0.1115 S23: 0.0177 REMARK 3 S31: 0.1386 S32: -0.0334 S33: 0.1236 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3761 -16.4769 -12.5686 REMARK 3 T TENSOR REMARK 3 T11: 0.5166 T22: 0.5628 REMARK 3 T33: 0.6276 T12: -0.0665 REMARK 3 T13: 0.0774 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 7.3903 L22: 3.3152 REMARK 3 L33: 3.4019 L12: -0.6966 REMARK 3 L13: 3.2868 L23: 0.4346 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: -0.5136 S13: 0.6022 REMARK 3 S21: 0.4120 S22: 0.2686 S23: 0.1443 REMARK 3 S31: -0.2949 S32: -0.5718 S33: -0.0006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0625 -17.1135 -13.7944 REMARK 3 T TENSOR REMARK 3 T11: 0.4260 T22: 0.5439 REMARK 3 T33: 0.5991 T12: -0.0486 REMARK 3 T13: -0.0570 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.5659 L22: 4.8069 REMARK 3 L33: 2.8910 L12: -0.4313 REMARK 3 L13: 0.1263 L23: -1.1373 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.0156 S13: 0.0012 REMARK 3 S21: 0.3905 S22: 0.1546 S23: -0.6592 REMARK 3 S31: 0.0314 S32: 0.2321 S33: -0.0907 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8609 -33.5590 -6.7952 REMARK 3 T TENSOR REMARK 3 T11: 0.7556 T22: 0.6460 REMARK 3 T33: 0.5905 T12: -0.0466 REMARK 3 T13: -0.1500 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.2393 L22: 3.4678 REMARK 3 L33: 1.9212 L12: -0.7485 REMARK 3 L13: 0.4308 L23: -0.4908 REMARK 3 S TENSOR REMARK 3 S11: 0.0925 S12: -0.1096 S13: -0.1191 REMARK 3 S21: 0.6094 S22: 0.2893 S23: -0.4264 REMARK 3 S31: 0.2099 S32: 0.2431 S33: -0.2262 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6760 -32.4293 -16.2583 REMARK 3 T TENSOR REMARK 3 T11: 0.5892 T22: 0.6119 REMARK 3 T33: 0.5986 T12: -0.0354 REMARK 3 T13: -0.1393 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.5331 L22: 3.1204 REMARK 3 L33: 4.3712 L12: 0.2085 REMARK 3 L13: -0.5770 L23: -0.8896 REMARK 3 S TENSOR REMARK 3 S11: 0.1828 S12: -0.4759 S13: -0.1854 REMARK 3 S21: -0.3351 S22: -0.0136 S23: -0.0298 REMARK 3 S31: 1.0405 S32: 0.1530 S33: -0.0994 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7704 -32.5127 -27.6345 REMARK 3 T TENSOR REMARK 3 T11: 0.7481 T22: 0.5795 REMARK 3 T33: 0.5695 T12: -0.0453 REMARK 3 T13: -0.1299 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 4.4734 L22: 5.1138 REMARK 3 L33: 4.7855 L12: -0.6192 REMARK 3 L13: 0.0664 L23: -0.3197 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.8007 S13: -0.6233 REMARK 3 S21: -0.5338 S22: 0.0227 S23: 0.4181 REMARK 3 S31: 0.7990 S32: -0.4803 S33: -0.3192 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97702 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.7 M NACL, 0.1M NA-HEPES PH 8.5 AND 3 REMARK 280 % DMSO, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.69500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.69500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 TYR A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 VAL A 156 REMARK 465 THR A 157 REMARK 465 ALA A 158 REMARK 465 LYS A 159 REMARK 465 LYS A 160 REMARK 465 PRO A 161 REMARK 465 SER A 162 REMARK 465 ILE A 163 REMARK 465 PHE A 164 REMARK 465 SER A 165 REMARK 465 LYS A 166 REMARK 465 TRP A 167 REMARK 465 LYS A 168 REMARK 465 GLY A 169 REMARK 465 GLY A 170 REMARK 465 LYS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 TYR B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 VAL B 156 REMARK 465 THR B 157 REMARK 465 ALA B 158 REMARK 465 LYS B 159 REMARK 465 LYS B 160 REMARK 465 PRO B 161 REMARK 465 SER B 162 REMARK 465 ILE B 163 REMARK 465 PHE B 164 REMARK 465 SER B 165 REMARK 465 LYS B 166 REMARK 465 TRP B 167 REMARK 465 LYS B 168 REMARK 465 GLY B 169 REMARK 465 GLY B 170 REMARK 465 LYS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 36 -136.01 -142.20 REMARK 500 LEU B 31 112.04 -162.38 REMARK 500 ARG B 36 -125.46 -128.68 REMARK 500 MET B 40 19.48 -141.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 HOH A 305 O 109.6 REMARK 620 3 HOH A 309 O 80.9 167.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 70 NE2 REMARK 620 2 HOH B 303 O 70.7 REMARK 620 3 HOH B 317 O 101.4 164.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 124 OE2 REMARK 620 2 ATP B 201 O2G 91.4 REMARK 620 3 ATP B 201 O2B 77.9 89.2 REMARK 620 4 ATP B 201 O1A 175.2 89.5 97.3 REMARK 620 N 1 2 3 DBREF 8C4O A 1 173 UNP Q8Y5E4 DACA_LISMO 101 273 DBREF 8C4O B 1 173 UNP Q8Y5E4 DACA_LISMO 101 273 SEQADV 8C4O GLY A -4 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8C4O PRO A -3 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8C4O LEU A -2 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8C4O GLY A -1 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8C4O SER A 0 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8C4O GLY B -4 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8C4O PRO B -3 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8C4O LEU B -2 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8C4O GLY B -1 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8C4O SER B 0 UNP Q8Y5E4 EXPRESSION TAG SEQRES 1 A 178 GLY PRO LEU GLY SER TYR GLY SER ARG ILE GLU ARG GLU SEQRES 2 A 178 GLN HIS HIS LEU ILE GLU SER ILE GLU LYS SER THR GLN SEQRES 3 A 178 TYR MET ALA LYS ARG ARG ILE GLY ALA LEU ILE SER VAL SEQRES 4 A 178 ALA ARG ASP THR GLY MET ASP ASP TYR ILE GLU THR GLY SEQRES 5 A 178 ILE PRO LEU ASN ALA LYS ILE SER SER GLN LEU LEU ILE SEQRES 6 A 178 ASN ILE PHE ILE PRO ASN THR PRO LEU HIS ASP GLY ALA SEQRES 7 A 178 VAL ILE ILE LYS GLY ASN GLU ILE ALA SER ALA ALA SER SEQRES 8 A 178 TYR LEU PRO LEU SER ASP SER PRO PHE LEU SER LYS GLU SEQRES 9 A 178 LEU GLY THR ARG HIS ARG ALA ALA LEU GLY ILE SER GLU SEQRES 10 A 178 VAL THR ASP SER ILE THR ILE VAL VAL SER GLU GLU THR SEQRES 11 A 178 GLY GLY ILE SER LEU THR LYS GLY GLY GLU LEU PHE ARG SEQRES 12 A 178 ASP VAL SER GLU GLU GLU LEU HIS LYS ILE LEU LEU LYS SEQRES 13 A 178 GLU LEU VAL THR VAL THR ALA LYS LYS PRO SER ILE PHE SEQRES 14 A 178 SER LYS TRP LYS GLY GLY LYS SER GLU SEQRES 1 B 178 GLY PRO LEU GLY SER TYR GLY SER ARG ILE GLU ARG GLU SEQRES 2 B 178 GLN HIS HIS LEU ILE GLU SER ILE GLU LYS SER THR GLN SEQRES 3 B 178 TYR MET ALA LYS ARG ARG ILE GLY ALA LEU ILE SER VAL SEQRES 4 B 178 ALA ARG ASP THR GLY MET ASP ASP TYR ILE GLU THR GLY SEQRES 5 B 178 ILE PRO LEU ASN ALA LYS ILE SER SER GLN LEU LEU ILE SEQRES 6 B 178 ASN ILE PHE ILE PRO ASN THR PRO LEU HIS ASP GLY ALA SEQRES 7 B 178 VAL ILE ILE LYS GLY ASN GLU ILE ALA SER ALA ALA SER SEQRES 8 B 178 TYR LEU PRO LEU SER ASP SER PRO PHE LEU SER LYS GLU SEQRES 9 B 178 LEU GLY THR ARG HIS ARG ALA ALA LEU GLY ILE SER GLU SEQRES 10 B 178 VAL THR ASP SER ILE THR ILE VAL VAL SER GLU GLU THR SEQRES 11 B 178 GLY GLY ILE SER LEU THR LYS GLY GLY GLU LEU PHE ARG SEQRES 12 B 178 ASP VAL SER GLU GLU GLU LEU HIS LYS ILE LEU LEU LYS SEQRES 13 B 178 GLU LEU VAL THR VAL THR ALA LYS LYS PRO SER ILE PHE SEQRES 14 B 178 SER LYS TRP LYS GLY GLY LYS SER GLU HET MN A 201 1 HET MN A 202 1 HET ATP A 203 43 HET ATP B 201 43 HET CL B 202 1 HET MG B 203 1 HET MN B 204 1 HETNAM MN MANGANESE (II) ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 MN 3(MN 2+) FORMUL 5 ATP 2(C10 H16 N5 O13 P3) FORMUL 7 CL CL 1- FORMUL 8 MG MG 2+ FORMUL 10 HOH *46(H2 O) HELIX 1 AA1 ARG A 4 ARG A 26 1 23 HELIX 2 AA2 MET A 40 GLU A 45 1 6 HELIX 3 AA3 SER A 55 ILE A 64 1 10 HELIX 4 AA4 GLY A 101 THR A 114 1 14 HELIX 5 AA5 SER A 141 VAL A 154 1 14 HELIX 6 AA6 GLU B 6 ARG B 26 1 21 HELIX 7 AA7 MET B 40 GLU B 45 1 6 HELIX 8 AA8 SER B 55 PHE B 63 1 9 HELIX 9 AA9 GLY B 101 THR B 114 1 14 HELIX 10 AB1 SER B 141 VAL B 154 1 14 SHEET 1 AA1 7 ILE A 48 LYS A 53 0 SHEET 2 AA1 7 GLU A 80 SER A 86 -1 O ALA A 84 N ILE A 48 SHEET 3 AA1 7 ALA A 73 LYS A 77 -1 N ALA A 73 O SER A 86 SHEET 4 AA1 7 ALA A 30 VAL A 34 1 N SER A 33 O VAL A 74 SHEET 5 AA1 7 ILE A 117 VAL A 121 -1 O ILE A 117 N VAL A 34 SHEET 6 AA1 7 ILE A 128 LYS A 132 -1 O SER A 129 N VAL A 120 SHEET 7 AA1 7 GLU A 135 PHE A 137 -1 O PHE A 137 N LEU A 130 SHEET 1 AA2 7 ILE B 48 LYS B 53 0 SHEET 2 AA2 7 GLU B 80 SER B 86 -1 O ALA B 84 N ILE B 48 SHEET 3 AA2 7 ALA B 73 LYS B 77 -1 N ALA B 73 O SER B 86 SHEET 4 AA2 7 ALA B 30 VAL B 34 1 N SER B 33 O VAL B 74 SHEET 5 AA2 7 ILE B 117 VAL B 121 -1 O ILE B 117 N VAL B 34 SHEET 6 AA2 7 ILE B 128 LYS B 132 -1 O SER B 129 N VAL B 120 SHEET 7 AA2 7 GLU B 135 PHE B 137 -1 O PHE B 137 N LEU B 130 LINK ND1 HIS A 11 MN MN A 201 1555 1555 2.51 LINK NE2 HIS A 70 MN MN A 202 1555 1555 2.22 LINK MN MN A 202 O HOH A 305 1555 1555 1.97 LINK MN MN A 202 O HOH A 309 1555 1555 1.86 LINK NE2 HIS B 70 MN MN B 204 1555 1555 2.17 LINK OE2 GLU B 124 MG MG B 203 1555 1555 2.05 LINK O2G ATP B 201 MG MG B 203 1555 1555 2.30 LINK O2B ATP B 201 MG MG B 203 1555 1555 2.35 LINK O1A ATP B 201 MG MG B 203 1555 1555 2.10 LINK MN MN B 204 O HOH B 303 1555 1555 2.21 LINK MN MN B 204 O HOH B 317 1555 1555 2.20 CRYST1 42.500 64.650 129.390 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023529 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007729 0.00000