HEADER TRANSPORT PROTEIN 12-JAN-23 8C75 TITLE PBP ACCA FROM A. TUMEFACIENS BO542 IN APOFORM 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGROCINOPINE UTILIZATION PERIPLASMIC BINDING PROTEIN ACCA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 358; SOURCE 4 STRAIN: BO542; SOURCE 5 GENE: ACCA, AGRTICHRY5_232; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PERIPLASMIC BINDING PROTEIN, SOLUTE BINDING PROTEIN, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MORERA,A.VIGOUROUX,P.LEGRAND REVDAT 2 07-FEB-24 8C75 1 JRNL REVDAT 1 24-JAN-24 8C75 0 JRNL AUTH S.MORERA,A.VIGOUROUX,M.AUMONT-NICAISE,M.AHMAR,T.MEYER, JRNL AUTH 2 A.EL SAHILI,G.DEICSICS,A.GONZALEZ-MULA,S.LI,J.DORE,S.SIRIGU, JRNL AUTH 3 P.LEGRAND,C.PENOT,F.ANDRE,D.FAURE,L.SOULERE,Y.QUENEAU,L.VIAL JRNL TITL A HIGHLY CONSERVED LIGAND-BINDING SITE FOR ACCA TRANSPORTERS JRNL TITL 2 OF ANTIBIOTIC AND QUORUM-SENSING REGULATOR IN AGROBACTERIUM JRNL TITL 3 LEADS TO A DIFFERENT SPECIFICITY. JRNL REF BIOCHEM.J. V. 481 93 2024 JRNL REFN ESSN 1470-8728 JRNL PMID 38058289 JRNL DOI 10.1042/BCJ20230273 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 74.1 REMARK 3 NUMBER OF REFLECTIONS : 83458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4223 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 10.73 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE : 0.3163 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 64 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 725 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.64360 REMARK 3 B22 (A**2) : -0.09230 REMARK 3 B33 (A**2) : 1.73600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06920 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.172 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.152 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.278 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.151 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 15783 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 28537 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 4628 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 2458 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 15783 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1031 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 15233 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.46 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.96 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|493 - A|521 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.6714 8.9487 -47.4818 REMARK 3 T TENSOR REMARK 3 T11: -0.1279 T22: -0.1081 REMARK 3 T33: -0.0663 T12: -0.009 REMARK 3 T13: 0.0019 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.6783 L22: 1.2181 REMARK 3 L33: 1.4639 L12: -0.5999 REMARK 3 L13: -0.1099 L23: 0.3578 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: -0.1181 S13: 0.0304 REMARK 3 S21: -0.1181 S22: 0.0203 S23: 0.0374 REMARK 3 S31: 0.0304 S32: 0.0374 S33: -0.0619 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|282 - A|492 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.2018 -8.2928 -27.3329 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: -0.067 REMARK 3 T33: 0.0276 T12: 0.0656 REMARK 3 T13: 0.0059 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 3.3117 L22: 2.7478 REMARK 3 L33: 2.9439 L12: 0.1399 REMARK 3 L13: -1.6519 L23: 0.1591 REMARK 3 S TENSOR REMARK 3 S11: -0.3943 S12: 0.3551 S13: 0.6798 REMARK 3 S21: 0.3551 S22: 0.1498 S23: 0.1377 REMARK 3 S31: 0.6798 S32: 0.1377 S33: 0.2445 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|493 - B|521 } REMARK 3 ORIGIN FOR THE GROUP (A): 8.9408 42.1987 -19.1147 REMARK 3 T TENSOR REMARK 3 T11: -0.1384 T22: -0.1176 REMARK 3 T33: -0.0477 T12: 0.0058 REMARK 3 T13: 0.0115 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.745 L22: 0.9229 REMARK 3 L33: 1.7421 L12: -0.3326 REMARK 3 L13: 0.3939 L23: -0.3713 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: -0.0913 S13: -0.0495 REMARK 3 S21: -0.0913 S22: -0.0422 S23: -0.0027 REMARK 3 S31: -0.0495 S32: -0.0027 S33: 0.0596 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|282 - B|492 } REMARK 3 ORIGIN FOR THE GROUP (A): -5.1968 59.3229 -1.0194 REMARK 3 T TENSOR REMARK 3 T11: -0.033 T22: -0.1101 REMARK 3 T33: 0.0868 T12: 0.0126 REMARK 3 T13: -0.0865 T23: 0.001 REMARK 3 L TENSOR REMARK 3 L11: 3.5248 L22: 2.7128 REMARK 3 L33: 3.6384 L12: -1.2442 REMARK 3 L13: 2.3066 L23: -0.988 REMARK 3 S TENSOR REMARK 3 S11: -0.4779 S12: 0.2656 S13: -0.6857 REMARK 3 S21: 0.2656 S22: -0.0633 S23: -0.0242 REMARK 3 S31: -0.6857 S32: -0.0242 S33: 0.5413 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C75 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292127926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113578 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 49.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.11700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, ACNH4, NA CITRATE, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 91.03750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 30 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 465 MET B 30 REMARK 465 HIS B 522 REMARK 465 HIS B 523 REMARK 465 HIS B 524 REMARK 465 HIS B 525 REMARK 465 HIS B 526 REMARK 465 HIS B 527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR B 174 HG SER B 177 1.47 REMARK 500 O TYR A 174 HG SER A 177 1.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 -178.73 -179.44 REMARK 500 ALA A 87 -92.99 -129.22 REMARK 500 LYS A 98 10.09 -141.68 REMARK 500 ALA A 213 127.34 -39.64 REMARK 500 ASN A 214 19.56 53.40 REMARK 500 ASP A 215 -64.03 -122.33 REMARK 500 ASN A 374 48.25 -99.55 REMARK 500 LEU A 414 -70.68 -109.28 REMARK 500 MET A 489 -65.58 -92.72 REMARK 500 SER A 508 34.88 -75.85 REMARK 500 ASN A 517 40.00 -153.01 REMARK 500 LEU A 518 103.36 -160.83 REMARK 500 SER B 53 -178.35 -179.32 REMARK 500 ALA B 87 -93.05 -128.67 REMARK 500 ALA B 213 127.30 -39.73 REMARK 500 ASN B 214 19.72 53.43 REMARK 500 ASP B 215 -63.85 -122.36 REMARK 500 ASN B 374 48.70 -99.68 REMARK 500 LEU B 414 -70.74 -108.76 REMARK 500 MET B 489 -65.86 -92.74 REMARK 500 SER B 508 35.42 -75.79 REMARK 500 ASN B 517 38.35 -152.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1038 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1039 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1040 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1041 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH B1073 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B1074 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B1075 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B1076 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B1077 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B1078 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B1079 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B1080 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B1081 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B1082 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH B1083 DISTANCE = 8.60 ANGSTROMS REMARK 525 HOH B1084 DISTANCE = 9.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 328 OD1 REMARK 620 2 TYR B 339 OH 88.9 REMARK 620 3 HOH B 728 O 96.0 72.7 REMARK 620 4 HOH B 734 O 95.3 151.1 78.4 REMARK 620 5 HOH B 802 O 83.1 118.0 169.2 90.9 REMARK 620 6 HOH B 991 O 175.2 95.8 84.5 80.1 95.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8C6R RELATED DB: PDB REMARK 900 RELATED ID: 8C6U RELATED DB: PDB REMARK 900 RELATED ID: 8C6W RELATED DB: PDB REMARK 900 RELATED ID: 8C6Y RELATED DB: PDB DBREF1 8C75 A 31 521 UNP A0A2P0QK24_RHIRD DBREF2 8C75 A A0A2P0QK24 22 512 DBREF1 8C75 B 31 521 UNP A0A2P0QK24_RHIRD DBREF2 8C75 B A0A2P0QK24 22 512 SEQADV 8C75 MET A 30 UNP A0A2P0QK2 INITIATING METHIONINE SEQADV 8C75 HIS A 522 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS A 523 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS A 524 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS A 525 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS A 526 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS A 527 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 MET B 30 UNP A0A2P0QK2 INITIATING METHIONINE SEQADV 8C75 HIS B 522 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS B 523 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS B 524 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS B 525 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS B 526 UNP A0A2P0QK2 EXPRESSION TAG SEQADV 8C75 HIS B 527 UNP A0A2P0QK2 EXPRESSION TAG SEQRES 1 A 498 MET ASP ARG ARG ALA LEU ARG ILE GLY VAL ASN GLY LEU SEQRES 2 A 498 PRO PRO SER LEU GLU PRO ILE ASN GLY ILE SER ASN THR SEQRES 3 A 498 GLY PRO ARG ILE ILE ASN GLN ILE PHE ASP ALA LEU ILE SEQRES 4 A 498 ARG ARG ASP TYR PHE ALA ASP GLY ALA LYS GLY ASN ASN SEQRES 5 A 498 ILE LYS LEU VAL PRO ALA LEU ALA GLU SER PHE GLU ARG SEQRES 6 A 498 ILE ASP ASP LYS SER ILE ARG PHE LYS LEU ARG GLN GLY SEQRES 7 A 498 VAL LYS PHE HIS ASN GLY ALA GLU MET THR ALA GLU ASP SEQRES 8 A 498 VAL ALA PHE THR PHE SER SER GLU ARG LEU TRP GLY ASP SEQRES 9 A 498 GLU ALA ILE LYS THR VAL PRO ASN GLY ARG ASN PHE SER SEQRES 10 A 498 PRO ASN TRP ASP GLU PRO VAL VAL GLU ASP LYS TYR THR SEQRES 11 A 498 VAL VAL LEU ARG THR LYS THR PRO SER TYR LEU ILE GLU SEQRES 12 A 498 LYS TYR LEU GLY SER TRP LEU GLY PRO ILE VAL PRO LYS SEQRES 13 A 498 GLU TYR TYR LYS SER LEU GLY ALA VAL ALA PHE GLY ASN SEQRES 14 A 498 LYS PRO ILE GLY THR GLY PRO TYR LYS PHE ARG GLU LEU SEQRES 15 A 498 VAL ALA ASN ASP HIS VAL THR LEU GLU ALA ASN ASP GLY SEQRES 16 A 498 TYR TRP GLY ASP LYS PRO THR ALA SER THR ILE THR TYR SEQRES 17 A 498 GLN VAL VAL ALA GLU PRO ALA THR ARG VAL ALA GLY LEU SEQRES 18 A 498 ILE SER GLY GLU TYR ASP ILE ILE THR THR LEU THR PRO SEQRES 19 A 498 ASP ASP MET ALA LEU VAL ASP GLY TYR SER ASP LEU GLU SEQRES 20 A 498 THR ARG GLY THR LEU ILE GLU ASN LEU HIS MET PHE THR SEQRES 21 A 498 PHE ASN MET ASN GLN PRO ILE PHE GLN ASN LYS THR LEU SEQRES 22 A 498 ARG ARG ALA LEU ALA LEU ALA VAL ASN ARG PRO LEU ILE SEQRES 23 A 498 VAL GLU ALA LEU TRP LYS ASN LYS ALA SER ILE PRO ASN SEQRES 24 A 498 GLY PHE ASN PHE PRO HIS TYR GLY ALA THR TYR ASP PRO SEQRES 25 A 498 LYS ARG LYS PRO MET GLU PHE ASN LEU LYS GLU ALA LYS SEQRES 26 A 498 ARG LEU VAL LYS GLU SER GLY TYR ASP GLY THR PRO ILE SEQRES 27 A 498 THR TYR HIS THR MET GLY ASN TYR TYR ALA ASN ALA VAL SEQRES 28 A 498 PRO ALA LEU MET MET MET ILE GLU MET TRP LYS ALA ALA SEQRES 29 A 498 GLY ILE THR VAL VAL PRO LYS ILE PHE ALA PRO GLY THR SEQRES 30 A 498 THR PRO LYS ASP SER ASP ILE LEU ILE ARG ASN TRP SER SEQRES 31 A 498 ASN GLY GLN TRP LEU THR ASP GLY LEU THR THR MET VAL SEQRES 32 A 498 SER GLU PHE GLY PRO GLY ARG GLY VAL GLN LYS ARG TRP SEQRES 33 A 498 GLY TRP LYS ALA PRO ALA GLU PHE ASN ASN LEU CYS ASP SEQRES 34 A 498 GLN VAL ALA GLN LEU LYS ASP GLY GLU GLU ARG SER ALA SEQRES 35 A 498 ALA PHE ASN ARG LEU ARG ASP ILE PHE GLU ASP GLU ALA SEQRES 36 A 498 PRO ALA VAL LEU MET TYR GLN PRO TYR ASP VAL TYR ALA SEQRES 37 A 498 ALA ARG LYS ASP VAL GLN TRP SER PRO VAL SER PHE GLU SEQRES 38 A 498 THR MET GLU PHE ARG GLY ASN LEU ASN PHE LYS HIS HIS SEQRES 39 A 498 HIS HIS HIS HIS SEQRES 1 B 498 MET ASP ARG ARG ALA LEU ARG ILE GLY VAL ASN GLY LEU SEQRES 2 B 498 PRO PRO SER LEU GLU PRO ILE ASN GLY ILE SER ASN THR SEQRES 3 B 498 GLY PRO ARG ILE ILE ASN GLN ILE PHE ASP ALA LEU ILE SEQRES 4 B 498 ARG ARG ASP TYR PHE ALA ASP GLY ALA LYS GLY ASN ASN SEQRES 5 B 498 ILE LYS LEU VAL PRO ALA LEU ALA GLU SER PHE GLU ARG SEQRES 6 B 498 ILE ASP ASP LYS SER ILE ARG PHE LYS LEU ARG GLN GLY SEQRES 7 B 498 VAL LYS PHE HIS ASN GLY ALA GLU MET THR ALA GLU ASP SEQRES 8 B 498 VAL ALA PHE THR PHE SER SER GLU ARG LEU TRP GLY ASP SEQRES 9 B 498 GLU ALA ILE LYS THR VAL PRO ASN GLY ARG ASN PHE SER SEQRES 10 B 498 PRO ASN TRP ASP GLU PRO VAL VAL GLU ASP LYS TYR THR SEQRES 11 B 498 VAL VAL LEU ARG THR LYS THR PRO SER TYR LEU ILE GLU SEQRES 12 B 498 LYS TYR LEU GLY SER TRP LEU GLY PRO ILE VAL PRO LYS SEQRES 13 B 498 GLU TYR TYR LYS SER LEU GLY ALA VAL ALA PHE GLY ASN SEQRES 14 B 498 LYS PRO ILE GLY THR GLY PRO TYR LYS PHE ARG GLU LEU SEQRES 15 B 498 VAL ALA ASN ASP HIS VAL THR LEU GLU ALA ASN ASP GLY SEQRES 16 B 498 TYR TRP GLY ASP LYS PRO THR ALA SER THR ILE THR TYR SEQRES 17 B 498 GLN VAL VAL ALA GLU PRO ALA THR ARG VAL ALA GLY LEU SEQRES 18 B 498 ILE SER GLY GLU TYR ASP ILE ILE THR THR LEU THR PRO SEQRES 19 B 498 ASP ASP MET ALA LEU VAL ASP GLY TYR SER ASP LEU GLU SEQRES 20 B 498 THR ARG GLY THR LEU ILE GLU ASN LEU HIS MET PHE THR SEQRES 21 B 498 PHE ASN MET ASN GLN PRO ILE PHE GLN ASN LYS THR LEU SEQRES 22 B 498 ARG ARG ALA LEU ALA LEU ALA VAL ASN ARG PRO LEU ILE SEQRES 23 B 498 VAL GLU ALA LEU TRP LYS ASN LYS ALA SER ILE PRO ASN SEQRES 24 B 498 GLY PHE ASN PHE PRO HIS TYR GLY ALA THR TYR ASP PRO SEQRES 25 B 498 LYS ARG LYS PRO MET GLU PHE ASN LEU LYS GLU ALA LYS SEQRES 26 B 498 ARG LEU VAL LYS GLU SER GLY TYR ASP GLY THR PRO ILE SEQRES 27 B 498 THR TYR HIS THR MET GLY ASN TYR TYR ALA ASN ALA VAL SEQRES 28 B 498 PRO ALA LEU MET MET MET ILE GLU MET TRP LYS ALA ALA SEQRES 29 B 498 GLY ILE THR VAL VAL PRO LYS ILE PHE ALA PRO GLY THR SEQRES 30 B 498 THR PRO LYS ASP SER ASP ILE LEU ILE ARG ASN TRP SER SEQRES 31 B 498 ASN GLY GLN TRP LEU THR ASP GLY LEU THR THR MET VAL SEQRES 32 B 498 SER GLU PHE GLY PRO GLY ARG GLY VAL GLN LYS ARG TRP SEQRES 33 B 498 GLY TRP LYS ALA PRO ALA GLU PHE ASN ASN LEU CYS ASP SEQRES 34 B 498 GLN VAL ALA GLN LEU LYS ASP GLY GLU GLU ARG SER ALA SEQRES 35 B 498 ALA PHE ASN ARG LEU ARG ASP ILE PHE GLU ASP GLU ALA SEQRES 36 B 498 PRO ALA VAL LEU MET TYR GLN PRO TYR ASP VAL TYR ALA SEQRES 37 B 498 ALA ARG LYS ASP VAL GLN TRP SER PRO VAL SER PHE GLU SEQRES 38 B 498 THR MET GLU PHE ARG GLY ASN LEU ASN PHE LYS HIS HIS SEQRES 39 B 498 HIS HIS HIS HIS HET NA A 601 1 HET PGE A 602 24 HET PEG B 601 17 HET NA B 602 1 HET NA B 603 1 HET EDO B 604 10 HETNAM NA SODIUM ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NA 3(NA 1+) FORMUL 4 PGE C6 H14 O4 FORMUL 5 PEG C4 H10 O3 FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *725(H2 O) HELIX 1 AA1 GLY A 56 PHE A 64 1 9 HELIX 2 AA2 PHE A 73 ALA A 77 5 5 HELIX 3 AA3 THR A 117 PHE A 125 1 9 HELIX 4 AA4 GLU A 134 VAL A 139 1 6 HELIX 5 AA5 LEU A 170 GLY A 176 1 7 HELIX 6 AA6 PRO A 184 LYS A 199 1 16 HELIX 7 AA7 GLU A 242 GLY A 253 1 12 HELIX 8 AA8 THR A 262 ASP A 264 5 3 HELIX 9 AA9 ASP A 265 GLY A 271 1 7 HELIX 10 AB1 GLN A 294 ASN A 299 1 6 HELIX 11 AB2 ASN A 299 ALA A 309 1 11 HELIX 12 AB3 ASN A 311 LYS A 321 1 11 HELIX 13 AB4 PHE A 332 TYR A 339 5 8 HELIX 14 AB5 ASN A 349 GLY A 361 1 13 HELIX 15 AB6 ASN A 378 ALA A 393 1 16 HELIX 16 AB7 LYS A 409 ILE A 413 5 5 HELIX 17 AB8 THR A 430 GLY A 436 1 7 HELIX 18 AB9 ARG A 439 ARG A 444 1 6 HELIX 19 AC1 PRO A 450 LEU A 463 1 14 HELIX 20 AC2 GLY A 466 ALA A 484 1 19 HELIX 21 AC3 GLY B 56 PHE B 64 1 9 HELIX 22 AC4 PHE B 73 ALA B 77 5 5 HELIX 23 AC5 THR B 117 PHE B 125 1 9 HELIX 24 AC6 GLU B 134 VAL B 139 1 6 HELIX 25 AC7 LEU B 170 GLY B 176 1 7 HELIX 26 AC8 PRO B 184 LYS B 199 1 16 HELIX 27 AC9 GLU B 242 GLY B 253 1 12 HELIX 28 AD1 THR B 262 ASP B 264 5 3 HELIX 29 AD2 ASP B 265 GLY B 271 1 7 HELIX 30 AD3 GLN B 294 ASN B 299 1 6 HELIX 31 AD4 ASN B 299 ALA B 309 1 11 HELIX 32 AD5 ASN B 311 LYS B 321 1 11 HELIX 33 AD6 PHE B 332 TYR B 339 5 8 HELIX 34 AD7 ASN B 349 GLY B 361 1 13 HELIX 35 AD8 ASN B 378 ALA B 393 1 16 HELIX 36 AD9 LYS B 409 ILE B 413 5 5 HELIX 37 AE1 THR B 430 GLY B 436 1 7 HELIX 38 AE2 ARG B 439 ARG B 444 1 6 HELIX 39 AE3 PRO B 450 LEU B 463 1 14 HELIX 40 AE4 GLY B 466 ALA B 484 1 19 SHEET 1 AA1 7 TYR A 206 VAL A 212 0 SHEET 2 AA1 7 HIS A 216 ALA A 221 -1 O GLU A 220 N LYS A 207 SHEET 3 AA1 7 THR A 234 VAL A 239 -1 O TYR A 237 N VAL A 217 SHEET 4 AA1 7 LEU A 35 VAL A 39 1 N ILE A 37 O THR A 236 SHEET 5 AA1 7 ILE A 257 LEU A 261 1 O ILE A 257 N GLY A 38 SHEET 6 AA1 7 TYR A 493 ARG A 499 -1 O VAL A 495 N LEU A 261 SHEET 7 AA1 7 LEU A 275 LEU A 281 -1 N ARG A 278 O TYR A 496 SHEET 1 AA2 2 ILE A 68 ARG A 70 0 SHEET 2 AA2 2 LEU A 84 PRO A 86 -1 O VAL A 85 N ARG A 69 SHEET 1 AA3 4 ALA A 89 ASP A 96 0 SHEET 2 AA3 4 SER A 99 LEU A 104 -1 O LYS A 103 N SER A 91 SHEET 3 AA3 4 THR A 159 ARG A 163 -1 O VAL A 160 N PHE A 102 SHEET 4 AA3 4 VAL A 153 ASP A 156 -1 N VAL A 153 O VAL A 161 SHEET 1 AA4 5 VAL A 397 ILE A 401 0 SHEET 2 AA4 5 ILE A 367 THR A 371 1 N TYR A 369 O LYS A 400 SHEET 3 AA4 5 ILE A 415 GLY A 421 1 O ILE A 415 N HIS A 370 SHEET 4 AA4 5 ASN A 284 PHE A 290 -1 N MET A 287 O TRP A 418 SHEET 5 AA4 5 ALA A 486 TYR A 490 -1 O VAL A 487 N PHE A 288 SHEET 1 AA5 2 VAL A 502 GLN A 503 0 SHEET 2 AA5 2 ASN A 519 PHE A 520 -1 O ASN A 519 N GLN A 503 SHEET 1 AA6 7 TYR B 206 VAL B 212 0 SHEET 2 AA6 7 HIS B 216 ALA B 221 -1 O GLU B 220 N LYS B 207 SHEET 3 AA6 7 THR B 234 VAL B 239 -1 O TYR B 237 N VAL B 217 SHEET 4 AA6 7 LEU B 35 VAL B 39 1 N ILE B 37 O THR B 236 SHEET 5 AA6 7 ILE B 257 LEU B 261 1 O ILE B 257 N GLY B 38 SHEET 6 AA6 7 TYR B 493 ARG B 499 -1 O ALA B 497 N ILE B 258 SHEET 7 AA6 7 LEU B 275 LEU B 281 -1 N THR B 280 O ASP B 494 SHEET 1 AA7 2 ILE B 68 ARG B 70 0 SHEET 2 AA7 2 LEU B 84 PRO B 86 -1 O VAL B 85 N ARG B 69 SHEET 1 AA8 4 ALA B 89 ASP B 96 0 SHEET 2 AA8 4 SER B 99 LEU B 104 -1 O LYS B 103 N SER B 91 SHEET 3 AA8 4 THR B 159 ARG B 163 -1 O VAL B 160 N PHE B 102 SHEET 4 AA8 4 VAL B 153 ASP B 156 -1 N VAL B 153 O VAL B 161 SHEET 1 AA9 5 VAL B 397 ILE B 401 0 SHEET 2 AA9 5 ILE B 367 THR B 371 1 N TYR B 369 O LYS B 400 SHEET 3 AA9 5 ILE B 415 GLY B 421 1 O ILE B 415 N HIS B 370 SHEET 4 AA9 5 ASN B 284 PHE B 290 -1 N MET B 287 O TRP B 418 SHEET 5 AA9 5 ALA B 486 TYR B 490 -1 O VAL B 487 N PHE B 288 SHEET 1 AB1 2 VAL B 502 GLN B 503 0 SHEET 2 AB1 2 ASN B 519 PHE B 520 -1 O ASN B 519 N GLN B 503 LINK OD1 ASP A 494 NA NA A 601 1555 1555 2.23 LINK OD1 ASN B 328 NA NA B 602 1555 1555 2.52 LINK OH TYR B 339 NA NA B 602 1555 1555 2.56 LINK OD1 ASP B 494 NA NA B 603 1555 1555 2.22 LINK NA NA B 602 O HOH B 728 1555 1455 2.34 LINK NA NA B 602 O HOH B 734 1555 1455 2.47 LINK NA NA B 602 O HOH B 802 1555 1555 2.27 LINK NA NA B 602 O HOH B 991 1555 1555 2.24 CISPEP 1 THR A 429 THR A 430 0 1.44 CISPEP 2 THR B 429 THR B 430 0 0.27 CRYST1 46.990 182.075 58.606 90.00 94.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021281 0.000000 0.001522 0.00000 SCALE2 0.000000 0.005492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017107 0.00000