HEADER OXIDOREDUCTASE 24-JAN-23 8CB0 TITLE CRYSTAL STRUCTURE OF DEHYDROGENASE DOMAIN OF CYLINDROSPERMUM STAGNALE TITLE 2 NADPH-OXIDASE 5 (NOX5) IN COMPLEX WITH M41 AND NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FERRIC REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYLINDROSPERMUM STAGNALE; SOURCE 3 ORGANISM_TAXID: 142864; SOURCE 4 GENE: CYLST_1289; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS ROS, INHIBITOR, REDOX BIOLOGY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.REIS,A.MATTEVI REVDAT 2 10-APR-24 8CB0 1 JRNL REVDAT 1 27-SEP-23 8CB0 0 JRNL AUTH J.REIS,C.GORGULLA,M.MASSARI,S.MARCHESE,S.VALENTE,B.NOCE, JRNL AUTH 2 L.BASILE,R.TORNER,H.COX 3RD,T.VIENNET,M.H.YANG,M.M.RONAN, JRNL AUTH 3 M.G.REES,J.A.ROTH,L.CAPASSO,A.NEBBIOSO,L.ALTUCCI,A.MAI, JRNL AUTH 4 H.ARTHANARI,A.MATTEVI JRNL TITL TARGETING ROS PRODUCTION THROUGH INHIBITION OF NADPH JRNL TITL 2 OXIDASES. JRNL REF NAT.CHEM.BIOL. V. 19 1540 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 37884805 JRNL DOI 10.1038/S41589-023-01457-5 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1681 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4043 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.4055 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -3.07000 REMARK 3 B12 (A**2) : 0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.262 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2238 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2006 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3067 ; 1.968 ; 1.677 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4624 ; 1.368 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 8.354 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;37.807 ;22.647 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 328 ;16.402 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2483 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 518 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1022 ; 5.656 ; 5.226 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1021 ; 5.654 ; 5.223 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1274 ; 8.127 ; 7.821 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1275 ; 8.126 ; 7.824 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1216 ; 7.193 ; 5.823 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1214 ; 7.189 ; 5.824 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1794 ;10.633 ; 8.553 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2447 ;12.736 ;57.259 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2448 ;12.734 ;57.290 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8CB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292128156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24102 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 72.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : 0.17200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 21.30 REMARK 200 R MERGE FOR SHELL (I) : 2.67600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 8CAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M DIETHYLENE GLYCOL; 0.3 M REMARK 280 TRIETHYLENE GLYCOL, 0.3 M TETRAETHYLENE GLYCOL, 0.3 M REMARK 280 PENTAETHYLENE GLYCOL, TRIS-HCL 0.1 M PH 8.0, 20% (V/V) ETHYLENE REMARK 280 GLYCOL, 10% (W/V) PEG8000, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 924 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 926 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 605 REMARK 465 ALA A 606 REMARK 465 GLN A 607 REMARK 465 GLN A 608 REMARK 465 LYS A 609 REMARK 465 SER A 610 REMARK 465 ASP A 611 REMARK 465 MET A 612 REMARK 465 LYS A 613 REMARK 465 SER A 614 REMARK 465 SER A 615 REMARK 465 THR A 616 REMARK 465 LEU A 617 REMARK 465 PHE A 618 REMARK 465 VAL A 619 REMARK 465 ALA A 620 REMARK 465 MET A 621 REMARK 465 ASP A 622 REMARK 465 LEU A 623 REMARK 465 MET A 624 REMARK 465 HIS A 625 REMARK 465 GLN A 626 REMARK 465 GLU A 627 REMARK 465 THR A 628 REMARK 465 LYS A 629 REMARK 465 VAL A 630 REMARK 465 ASP A 631 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 436 CG CD OE1 NE2 REMARK 470 SER A 503 OG REMARK 470 SER A 504 OG REMARK 470 SER A 506 OG REMARK 470 LYS A 560 CG CD CE NZ REMARK 470 LYS A 576 CG CD CE NZ REMARK 470 LEU A 632 CG CD1 CD2 REMARK 470 ILE A 633 CG1 CG2 CD1 REMARK 470 THR A 634 OG1 CG2 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 ARG A 639 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 644 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 413 O HOH A 901 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 495 CG - CD - NE ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 415 -168.83 -162.34 REMARK 500 SER A 503 -121.26 -153.70 REMARK 500 SER A 504 -43.21 102.42 REMARK 500 GLN A 556 -76.32 -93.43 REMARK 500 PHE A 581 16.38 -140.67 REMARK 500 LYS A 690 104.56 -55.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 501 GLY A 502 -149.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CB0 A 413 693 UNP K9WT99 K9WT99_9NOST 413 693 SEQADV 8CB0 GLY A 411 UNP K9WT99 EXPRESSION TAG SEQADV 8CB0 SER A 412 UNP K9WT99 EXPRESSION TAG SEQRES 1 A 283 GLY SER GLU PRO THR PHE VAL VAL ASN ALA SER LEU LEU SEQRES 2 A 283 PRO SER LYS VAL LEU GLY LEU GLN VAL GLN ARG PRO GLN SEQRES 3 A 283 SER PHE ASN TYR GLN PRO GLY ASP TYR LEU PHE ILE LYS SEQRES 4 A 283 CYS PRO GLY ILE SER LYS PHE GLU TRP HIS PRO PHE THR SEQRES 5 A 283 ILE SER SER ALA PRO GLU MET PRO ASP VAL LEU THR LEU SEQRES 6 A 283 HIS ILE ARG ALA VAL GLY SER TRP THR GLY LYS LEU TYR SEQRES 7 A 283 GLN LEU ILE ARG GLU GLN ARG GLU GLU TRP ILE ARG SER SEQRES 8 A 283 GLY SER SER GLN SER LEU PRO GLY VAL PRO VAL TYR ILE SEQRES 9 A 283 ASP GLY PRO TYR GLY THR PRO SER THR HIS ILE PHE GLU SEQRES 10 A 283 SER LYS TYR ALA ILE LEU ILE CYS ALA GLY ILE GLY VAL SEQRES 11 A 283 THR PRO PHE ALA SER ILE LEU LYS SER ILE LEU HIS ARG SEQRES 12 A 283 ASN GLN GLN ASN PRO ALA LYS MET PRO LEU LYS LYS VAL SEQRES 13 A 283 HIS PHE TYR TRP LEU ASN ARG GLU GLN LYS ALA PHE GLU SEQRES 14 A 283 TRP PHE VAL GLU LEU LEU SER LYS ILE GLU ALA GLU ASP SEQRES 15 A 283 THR ASN ASN LEU PHE ASP LEU ASN LEU TYR LEU THR GLY SEQRES 16 A 283 ALA GLN GLN LYS SER ASP MET LYS SER SER THR LEU PHE SEQRES 17 A 283 VAL ALA MET ASP LEU MET HIS GLN GLU THR LYS VAL ASP SEQRES 18 A 283 LEU ILE THR GLY LEU LYS SER ARG THR LYS THR GLY ARG SEQRES 19 A 283 PRO ASP TRP GLU GLU ILE PHE LYS ASP VAL ALA LYS GLN SEQRES 20 A 283 HIS ALA PRO ASP ASN VAL GLU VAL PHE PHE CYS GLY PRO SEQRES 21 A 283 THR GLY LEU ALA LEU GLN LEU ARG HIS LEU CYS THR LYS SEQRES 22 A 283 TYR GLY PHE GLY TYR ARG LYS GLU ASN PHE HET FAD A 801 53 HET U4F A 802 28 HET EDO A 803 4 HET EDO A 804 4 HET NAP A 805 48 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM U4F 15-(1,4-DIOXA-8-AZASPIRO[4.5]DECAN-8-YL)-14- HETNAM 2 U4F AZATETRACYCLO[7.7.1.0^{2,7}.0^{13,17}]HEPTADECA-1(16), HETNAM 3 U4F 2(7),3,5,9,11,13(17),14-OCTAEN-8-ONE HETNAM EDO 1,2-ETHANEDIOL HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 U4F C23 H20 N2 O3 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 NAP C21 H28 N7 O17 P3 FORMUL 7 HOH *47(H2 O) HELIX 1 AA1 GLY A 481 SER A 501 1 21 HELIX 2 AA2 THR A 520 SER A 528 5 9 HELIX 3 AA3 VAL A 540 ASN A 557 1 18 HELIX 4 AA4 GLU A 574 TRP A 580 5 7 HELIX 5 AA5 PHE A 581 ASP A 592 1 12 HELIX 6 AA6 ASP A 646 ALA A 659 1 14 HELIX 7 AA7 PRO A 670 TYR A 684 1 15 SHEET 1 AA1 6 HIS A 459 THR A 462 0 SHEET 2 AA1 6 TYR A 445 LYS A 449 -1 N ILE A 448 O HIS A 459 SHEET 3 AA1 6 VAL A 510 TYR A 518 -1 O ASP A 515 N PHE A 447 SHEET 4 AA1 6 SER A 412 LEU A 423 -1 N VAL A 417 O VAL A 510 SHEET 5 AA1 6 VAL A 427 GLN A 433 -1 O GLN A 431 N ASN A 419 SHEET 6 AA1 6 VAL A 472 ARG A 478 -1 O ILE A 477 N LEU A 428 SHEET 1 AA2 5 LYS A 641 THR A 642 0 SHEET 2 AA2 5 PHE A 597 LEU A 603 1 N LEU A 601 O LYS A 641 SHEET 3 AA2 5 LYS A 565 ASN A 572 1 N PHE A 568 O ASP A 598 SHEET 4 AA2 5 TYR A 530 ALA A 536 1 N ALA A 531 O HIS A 567 SHEET 5 AA2 5 VAL A 663 CYS A 668 1 O PHE A 666 N ILE A 532 CISPEP 1 GLY A 516 PRO A 517 0 0.90 CISPEP 2 ALA A 659 PRO A 660 0 2.79 CRYST1 128.683 128.683 72.106 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007771 0.004487 0.000000 0.00000 SCALE2 0.000000 0.008973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013868 0.00000