HEADER CELL ADHESION 26-JAN-23 8CC3 TITLE VIBRIO CHOLERAE GBPA (LPMO DOMAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLCNAC-BINDING PROTEIN A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 686; SOURCE 4 GENE: GBPA, VCA0811; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADHESIN, LPMO, REDOX ENZYME, COLONIZATION FACTOR, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.MONTSERRAT-CANALS,H.V.SORENSEN,G.CORDARA,U.KRENGEL REVDAT 2 20-NOV-24 8CC3 1 REMARK REVDAT 1 30-AUG-23 8CC3 0 JRNL AUTH H.V.SORENSEN,M.MONTSERRAT-CANALS,J.S.M.LOOSE,S.Z.FISHER, JRNL AUTH 2 M.MOULIN,M.P.BLAKELEY,G.CORDARA,K.BJERREGAARD-ANDERSEN, JRNL AUTH 3 U.KRENGEL JRNL TITL PERDEUTERATED GBPA ENABLES NEUTRON SCATTERING EXPERIMENTS OF JRNL TITL 2 A LYTIC POLYSACCHARIDE MONOOXYGENASE. JRNL REF ACS OMEGA V. 8 29101 2023 JRNL REFN ESSN 2470-1343 JRNL PMID 37599915 JRNL DOI 10.1021/ACSOMEGA.3C02168 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.DEVI,A.E.CARBERRY,G.M.ZICKUHR,A.L.DICKSON,D.J.HARRISON, REMARK 1 AUTH 2 R.G.DA SILVA REMARK 1 TITL HUMAN 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N -HYDROLASE 1: REMARK 1 TITL 2 MECHANISM OF 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HYDROLYSIS. REMARK 1 REF BIOCHEMISTRY 2023 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 37582341 REMARK 1 DOI 10.1021/ACS.BIOCHEM.3C00369 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.V.SORENSEN,M.MONTSERRAT-CANALS,J.S.M.LOOSE,S.Z.FISHER, REMARK 1 AUTH 2 M.MOULIN,M.P.BLAKELEY,G.CORDARA,K.BJERREGAARD-ANDERSEN, REMARK 1 AUTH 3 U.KRENGEL REMARK 1 TITL PERDEUTERATED GBPA ENABLES NEUTRON SCATTERING EXPERIMENTS OF REMARK 1 TITL 2 A LYTIC POLYSACCHARIDE MONOOXYGENASE. REMARK 1 REF ACS OMEGA V. 8 29101 2023 REMARK 1 REFN ESSN 2470-1343 REMARK 1 PMID 37599915 REMARK 1 DOI 10.1021/ACSOMEGA.3C02168 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 117455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.017 REMARK 3 FREE R VALUE TEST SET COUNT : 5893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7638 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 414 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.25600 REMARK 3 B22 (A**2) : -1.57800 REMARK 3 B33 (A**2) : 2.83400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.332 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3386 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3005 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4674 ; 1.504 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6963 ; 0.508 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 7.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 17 ; 7.286 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;13.270 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4264 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 816 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 679 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 116 ; 0.242 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1544 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.052 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 18 ; 0.086 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 7 ; 0.075 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1703 ; 1.105 ; 1.164 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1700 ; 1.070 ; 1.162 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2177 ; 1.471 ; 2.091 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2178 ; 1.471 ; 2.093 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1683 ; 1.277 ; 1.305 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1684 ; 1.276 ; 1.305 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2497 ; 1.690 ; 2.326 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2498 ; 1.689 ; 2.326 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6391 ; 5.639 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8CC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1292128209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 221328 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.128 REMARK 200 RESOLUTION RANGE LOW (A) : 47.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZINC ACETATE 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5 18% W/V PEG 8K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.45550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.55150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.45550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.55150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 305 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 29 53.49 -143.23 REMARK 500 GLU A 31 -94.44 -104.87 REMARK 500 GLU A 62 69.79 -157.27 REMARK 500 THR A 75 -134.03 -111.38 REMARK 500 ALA A 190 45.72 -93.04 REMARK 500 ALA B 29 54.63 -144.92 REMARK 500 GLU B 31 -96.76 -116.35 REMARK 500 GLU B 31 -90.32 -116.35 REMARK 500 THR B 75 -144.09 -124.08 REMARK 500 ASN B 134 37.89 98.41 REMARK 500 ASN B 136 90.99 90.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 78 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 524 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 526 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B 527 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 528 DISTANCE = 7.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 303 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 24 N REMARK 620 2 HIS A 24 ND1 93.4 REMARK 620 3 HIS A 121 NE2 97.1 169.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 ASP B 70 OD2 89.8 REMARK 620 3 ASP B 185 OD1 88.3 1.5 REMARK 620 4 HOH B 409 O 81.8 8.5 7.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 62 OE1 REMARK 620 2 ACT A 302 OXT 94.3 REMARK 620 3 GLU B 67 OE2 124.5 110.0 REMARK 620 4 GLU B 67 OE2 105.5 121.7 19.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE1 REMARK 620 2 ACT A 301 O 107.6 REMARK 620 3 GLU B 62 OE1 121.0 101.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 70 OD1 REMARK 620 2 ASP A 185 OD2 117.2 REMARK 620 3 GLU B 173 OE2 48.9 122.9 REMARK 620 4 HOH B 469 O 107.6 119.9 116.5 REMARK 620 5 HOH B 515 O 76.9 79.7 125.7 73.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 70 OD2 REMARK 620 2 ASP A 185 OD1 91.8 REMARK 620 3 VAL A 186 O 168.7 94.6 REMARK 620 4 THR A 189 O 88.6 176.2 85.7 REMARK 620 5 ALA A 191 O 87.1 76.4 103.4 99.8 REMARK 620 6 GLU B 173 OE2 78.6 142.0 101.7 34.5 66.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 125 OD2 REMARK 620 2 GLU A 155 OE1 126.5 REMARK 620 3 GLU A 155 OE2 112.7 53.7 REMARK 620 4 GLU B 175 OE1 52.2 160.2 107.0 REMARK 620 5 GLU B 175 OE2 53.6 161.9 108.4 2.3 REMARK 620 6 ASP B 202 OD2 55.1 158.2 104.6 3.4 3.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 139 OE1 REMARK 620 2 GLN A 139 OE1 54.6 REMARK 620 3 GLN A 139 NE2 11.3 59.3 REMARK 620 4 HOH A 430 O 84.6 125.9 74.9 REMARK 620 5 HOH A 486 O 84.4 112.9 91.0 93.9 REMARK 620 6 HOH A 505 O 159.3 106.0 164.8 115.3 99.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 147 OD2 REMARK 620 2 ASP A 147 OD2 0.0 REMARK 620 3 HOH A 415 O 101.2 101.2 REMARK 620 4 HOH A 415 O 95.8 95.8 133.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 24 N REMARK 620 2 HIS B 24 ND1 94.0 REMARK 620 3 HIS B 121 NE2 96.4 169.3 REMARK 620 N 1 2 DBREF 8CC3 A 24 203 UNP A6XA54 A6XA54_VIBCE 24 203 DBREF 8CC3 B 24 203 UNP A6XA54 A6XA54_VIBCE 24 203 SEQRES 1 A 180 HIS GLY TYR VAL SER ALA VAL GLU ASN GLY VAL ALA GLU SEQRES 2 A 180 GLY ARG VAL THR LEU CYS LYS PHE ALA ALA ASN GLY THR SEQRES 3 A 180 GLY GLU LYS ASN THR HIS CYS GLY ALA ILE GLN TYR GLU SEQRES 4 A 180 PRO GLN SER VAL GLU GLY PRO ASP GLY PHE PRO VAL THR SEQRES 5 A 180 GLY PRO ARG ASP GLY LYS ILE ALA SER ALA GLU SER ALA SEQRES 6 A 180 LEU ALA ALA ALA LEU ASP GLU GLN THR ALA ASP ARG TRP SEQRES 7 A 180 VAL LYS ARG PRO ILE GLN ALA GLY PRO GLN THR PHE GLU SEQRES 8 A 180 TRP THR PHE THR ALA ASN HIS VAL THR LYS ASP TRP LYS SEQRES 9 A 180 TYR TYR ILE THR LYS PRO ASN TRP ASN PRO ASN GLN PRO SEQRES 10 A 180 LEU SER ARG ASP ALA PHE ASP LEU ASN PRO PHE CYS VAL SEQRES 11 A 180 VAL GLU GLY ASN MET VAL GLN PRO PRO LYS ARG VAL SER SEQRES 12 A 180 HIS GLU CYS ILE VAL PRO GLU ARG GLU GLY TYR GLN VAL SEQRES 13 A 180 ILE LEU ALA VAL TRP ASP VAL GLY ASP THR ALA ALA SER SEQRES 14 A 180 PHE TYR ASN VAL ILE ASP VAL LYS PHE ASP GLY SEQRES 1 B 180 HIS GLY TYR VAL SER ALA VAL GLU ASN GLY VAL ALA GLU SEQRES 2 B 180 GLY ARG VAL THR LEU CYS LYS PHE ALA ALA ASN GLY THR SEQRES 3 B 180 GLY GLU LYS ASN THR HIS CYS GLY ALA ILE GLN TYR GLU SEQRES 4 B 180 PRO GLN SER VAL GLU GLY PRO ASP GLY PHE PRO VAL THR SEQRES 5 B 180 GLY PRO ARG ASP GLY LYS ILE ALA SER ALA GLU SER ALA SEQRES 6 B 180 LEU ALA ALA ALA LEU ASP GLU GLN THR ALA ASP ARG TRP SEQRES 7 B 180 VAL LYS ARG PRO ILE GLN ALA GLY PRO GLN THR PHE GLU SEQRES 8 B 180 TRP THR PHE THR ALA ASN HIS VAL THR LYS ASP TRP LYS SEQRES 9 B 180 TYR TYR ILE THR LYS PRO ASN TRP ASN PRO ASN GLN PRO SEQRES 10 B 180 LEU SER ARG ASP ALA PHE ASP LEU ASN PRO PHE CYS VAL SEQRES 11 B 180 VAL GLU GLY ASN MET VAL GLN PRO PRO LYS ARG VAL SER SEQRES 12 B 180 HIS GLU CYS ILE VAL PRO GLU ARG GLU GLY TYR GLN VAL SEQRES 13 B 180 ILE LEU ALA VAL TRP ASP VAL GLY ASP THR ALA ALA SER SEQRES 14 B 180 PHE TYR ASN VAL ILE ASP VAL LYS PHE ASP GLY HET ACT A 301 4 HET ACT A 302 4 HET CU A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET ZN A 306 1 HET ZN A 307 1 HET CU B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET NA B 305 1 HETNAM ACT ACETATE ION HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION HETNAM NA SODIUM ION FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 CU 2(CU 2+) FORMUL 6 ZN 7(ZN 2+) FORMUL 14 NA NA 1+ FORMUL 15 HOH *252(H2 O) HELIX 1 AA1 VAL A 39 LYS A 43 5 5 HELIX 2 AA2 CYS A 56 SER A 65 5 10 HELIX 3 AA3 ALA A 90 GLU A 95 5 6 HELIX 4 AA4 SER A 142 PHE A 146 5 5 HELIX 5 AA5 VAL B 39 LYS B 43 5 5 HELIX 6 AA6 CYS B 56 SER B 65 5 10 HELIX 7 AA7 ALA B 90 GLU B 95 5 6 HELIX 8 AA8 SER B 142 PHE B 146 5 5 SHEET 1 AA1 3 GLY A 25 SER A 28 0 SHEET 2 AA1 3 GLY A 109 PHE A 117 -1 O THR A 116 N TYR A 26 SHEET 3 AA1 3 ARG A 164 VAL A 171 -1 O HIS A 167 N PHE A 113 SHEET 1 AA2 3 GLU A 67 PRO A 69 0 SHEET 2 AA2 3 ALA A 191 LYS A 200 -1 O SER A 192 N GLY A 68 SHEET 3 AA2 3 ARG A 104 PRO A 105 1 N ARG A 104 O ASP A 198 SHEET 1 AA3 5 GLU A 67 PRO A 69 0 SHEET 2 AA3 5 ALA A 191 LYS A 200 -1 O SER A 192 N GLY A 68 SHEET 3 AA3 5 TYR A 177 VAL A 186 -1 N ALA A 182 O ASN A 195 SHEET 4 AA3 5 THR A 123 ILE A 130 -1 N LYS A 127 O VAL A 183 SHEET 5 AA3 5 CYS A 152 VAL A 159 -1 O GLY A 156 N LYS A 124 SHEET 1 AA4 3 GLY B 25 SER B 28 0 SHEET 2 AA4 3 GLY B 109 PHE B 117 -1 O THR B 116 N TYR B 26 SHEET 3 AA4 3 ARG B 164 VAL B 171 -1 O HIS B 167 N PHE B 113 SHEET 1 AA5 3 GLU B 67 PRO B 69 0 SHEET 2 AA5 3 ALA B 191 LYS B 200 -1 O SER B 192 N GLY B 68 SHEET 3 AA5 3 ARG B 104 PRO B 105 1 N ARG B 104 O ASP B 198 SHEET 1 AA6 5 GLU B 67 PRO B 69 0 SHEET 2 AA6 5 ALA B 191 LYS B 200 -1 O SER B 192 N GLY B 68 SHEET 3 AA6 5 TYR B 177 VAL B 186 -1 N ALA B 182 O ASN B 195 SHEET 4 AA6 5 THR B 123 ILE B 130 -1 N LYS B 127 O VAL B 183 SHEET 5 AA6 5 CYS B 152 VAL B 159 -1 O VAL B 154 N TRP B 126 SSBOND 1 CYS A 42 CYS A 56 1555 1555 2.05 SSBOND 2 CYS A 152 CYS A 169 1555 1555 2.07 SSBOND 3 CYS B 42 CYS B 56 1555 1555 1.97 SSBOND 4 CYS B 152 CYS B 169 1555 1555 2.04 LINK N HIS A 24 CU CU A 303 1555 1555 2.23 LINK ND1 HIS A 24 CU CU A 303 1555 1555 1.96 LINK NE2 HIS A 55 ZN ZN B 303 1555 2455 2.02 LINK OE1 GLU A 62 ZN ZN B 302 1555 1555 2.01 LINK OE1 GLU A 67 ZN ZN A 306 1555 1555 1.95 LINK OD1 ASP A 70 ZN ZN A 304 1555 1555 1.95 LINK OD2 ASP A 70 NA NA B 305 1555 4555 2.29 LINK NE2 HIS A 121 CU CU A 303 1555 1555 1.95 LINK OD2 ASP A 125 ZN ZN B 304 1555 4555 2.12 LINK OE1AGLN A 139 ZN ZN A 307 1555 1555 2.14 LINK OE1BGLN A 139 ZN ZN A 307 1555 1555 2.38 LINK NE2BGLN A 139 ZN ZN A 307 1555 1555 2.13 LINK OD2 ASP A 147 ZN ZN A 305 1555 1555 1.95 LINK OD2 ASP A 147 ZN ZN A 305 1555 2555 1.95 LINK OE1 GLU A 155 ZN ZN B 304 1555 4555 2.22 LINK OE2 GLU A 155 ZN ZN B 304 1555 4555 2.57 LINK OD2 ASP A 185 ZN ZN A 304 1555 1555 1.96 LINK OD1 ASP A 185 NA NA B 305 1555 4555 2.38 LINK O VAL A 186 NA NA B 305 1555 4555 2.30 LINK O THR A 189 NA NA B 305 1555 4555 2.54 LINK O ALA A 191 NA NA B 305 1555 4555 2.70 LINK O ACT A 301 ZN ZN A 306 1555 1555 2.05 LINK OXT ACT A 302 ZN ZN B 302 1555 1555 2.01 LINK ZN ZN A 304 OE2 GLU B 173 4455 1555 2.04 LINK ZN ZN A 304 O HOH B 469 1555 4555 2.06 LINK ZN ZN A 304 O HOH B 515 1555 4555 2.42 LINK ZN ZN A 305 O HOH A 415 1555 1555 2.12 LINK ZN ZN A 305 O HOH A 415 1555 2555 2.12 LINK ZN ZN A 306 OE1 GLU B 62 1555 1555 1.99 LINK ZN ZN A 307 O HOH A 430 1555 1555 2.26 LINK ZN ZN A 307 O HOH A 486 1555 1555 2.25 LINK ZN ZN A 307 O HOH A 505 1555 1555 1.85 LINK N HIS B 24 CU CU B 301 1555 1555 2.21 LINK ND1 HIS B 24 CU CU B 301 1555 1555 1.95 LINK OE2AGLU B 67 ZN ZN B 302 1555 1555 1.90 LINK OE2BGLU B 67 ZN ZN B 302 1555 1555 1.95 LINK OD2 ASP B 70 ZN ZN B 303 1555 1555 1.85 LINK NE2 HIS B 121 CU CU B 301 1555 1555 1.95 LINK OE2 GLU B 173 NA NA B 305 1555 1555 2.58 LINK OE1 GLU B 175 ZN ZN B 304 1555 1555 2.52 LINK OE2 GLU B 175 ZN ZN B 304 1555 1555 2.60 LINK OD1 ASP B 185 ZN ZN B 303 1555 1555 1.98 LINK OD2 ASP B 202 ZN ZN B 304 1555 1555 2.36 LINK ZN ZN B 303 O HOH B 409 1555 1555 1.96 CISPEP 1 PHE A 72 PRO A 73 0 1.17 CISPEP 2 PHE B 72 PRO B 73 0 -1.19 CRYST1 74.911 89.103 47.135 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021216 0.00000