HEADER LIGASE 03-FEB-23 8CGC TITLE STRUCTURE OF CSF1R IN COMPLEX WITH A PYROLLOPYRIMIDINE (COMPOUND 23) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE COLONY-STIMULATING FACTOR 1 RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CSF-1 RECEPTOR,CSF-1-R,CSF-1R,M-CSF-R,PROTO-ONCOGENE C-FMS; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSF1R, FMS; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, CSF1R, INHIBITORS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.I.AARHUS,F.BJORNSTAD,C.WOLOWCZYK,K.U.LARSEN,L.ROGNSTAD,T.LEITHAUG, AUTHOR 2 A.UNGER,P.HABENBERGER,A.WOLFF,G.BJORKOY,C.PRIDANS,J.EICKHOFF, AUTHOR 3 B.KLEBL,B.H.HOFF,E.SUNDBY REVDAT 3 07-FEB-24 8CGC 1 REMARK REVDAT 2 07-JUN-23 8CGC 1 JRNL REVDAT 1 24-MAY-23 8CGC 0 JRNL AUTH T.I.AARHUS,F.BJORNSTAD,C.WOLOWCZYK,K.U.LARSEN,L.ROGNSTAD, JRNL AUTH 2 T.LEITHAUG,A.UNGER,P.HABENBERGER,A.WOLF,G.BJORKOY,C.PRIDANS, JRNL AUTH 3 J.EICKHOFF,B.KLEBL,B.H.HOFF,E.SUNDBY JRNL TITL SYNTHESIS AND DEVELOPMENT OF HIGHLY SELECTIVE PYRROLO[2,3- D JRNL TITL 2 ]PYRIMIDINE CSF1R INHIBITORS TARGETING THE AUTOINHIBITED JRNL TITL 3 FORM. JRNL REF J.MED.CHEM. V. 66 6959 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37191268 JRNL DOI 10.1021/ACS.JMEDCHEM.3C00428 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 25909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.751 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2462 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.17000 REMARK 3 B22 (A**2) : -1.17000 REMARK 3 B33 (A**2) : 3.79700 REMARK 3 B12 (A**2) : -0.58500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2657 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2497 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3608 ; 1.380 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5744 ; 0.495 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.860 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ; 8.115 ; 5.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;15.022 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3157 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 643 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 587 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 61 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1307 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 252 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 3.364 ; 3.333 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1291 ; 3.364 ; 3.333 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1626 ; 5.163 ; 5.961 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1627 ; 5.164 ; 5.964 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1366 ; 4.023 ; 3.766 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1367 ; 4.021 ; 3.764 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1982 ; 6.507 ; 6.678 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1983 ; 6.506 ; 6.678 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8CGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25909 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.925 REMARK 200 RESOLUTION RANGE LOW (A) : 31.895 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2I1M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M DL-MALIC ACID PH 7.0, 23.0% W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.50650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.38644 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.74567 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 40.50650 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.38644 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.74567 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 40.50650 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.38644 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.74567 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.77288 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.49133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.77288 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.49133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.77288 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.49133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1383 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1431 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1447 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 531 REMARK 465 LYS A 532 REMARK 465 LYS A 533 REMARK 465 GLY A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 GLY A 541 REMARK 465 GLN A 542 REMARK 465 LYS A 543 REMARK 465 PRO A 544 REMARK 465 LYS A 545 REMARK 465 TYR A 546 REMARK 465 PRO A 731 REMARK 465 SER A 732 REMARK 465 LEU A 733 REMARK 465 SER A 734 REMARK 465 PRO A 735 REMARK 465 GLY A 736 REMARK 465 GLN A 737 REMARK 465 ASP A 738 REMARK 465 PRO A 739 REMARK 465 GLU A 740 REMARK 465 GLY A 741 REMARK 465 LEU A 742 REMARK 465 ASP A 743 REMARK 465 LYS A 744 REMARK 465 GLU A 745 REMARK 465 ASP A 746 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 919 O HOH A 1101 2.08 REMARK 500 O GLY A 657 O HOH A 1102 2.09 REMARK 500 O HOH A 1429 O HOH A 1453 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1119 O HOH A 1357 3775 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 548 73.05 -109.31 REMARK 500 GLU A 557 117.37 -33.21 REMARK 500 PRO A 570 -176.10 -57.61 REMARK 500 ARG A 777 -2.35 81.57 REMARK 500 ASP A 778 49.45 -148.12 REMARK 500 ALA A 780 149.14 -174.97 REMARK 500 THR A 787 -164.64 -116.65 REMARK 500 ASN A 862 -160.70 -171.63 REMARK 500 ASN A 862 -163.95 -171.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1478 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1479 DISTANCE = 6.19 ANGSTROMS DBREF 8CGC A 542 919 UNP P07333 CSF1R_HUMAN 542 919 SEQADV 8CGC MET A 531 UNP P07333 INITIATING METHIONINE SEQADV 8CGC LYS A 532 UNP P07333 EXPRESSION TAG SEQADV 8CGC LYS A 533 UNP P07333 EXPRESSION TAG SEQADV 8CGC GLY A 534 UNP P07333 EXPRESSION TAG SEQADV 8CGC HIS A 535 UNP P07333 EXPRESSION TAG SEQADV 8CGC HIS A 536 UNP P07333 EXPRESSION TAG SEQADV 8CGC HIS A 537 UNP P07333 EXPRESSION TAG SEQADV 8CGC HIS A 538 UNP P07333 EXPRESSION TAG SEQADV 8CGC HIS A 539 UNP P07333 EXPRESSION TAG SEQADV 8CGC HIS A 540 UNP P07333 EXPRESSION TAG SEQADV 8CGC GLY A 541 UNP P07333 EXPRESSION TAG SEQADV 8CGC A UNP P07333 GLY 696 DELETION SEQADV 8CGC A UNP P07333 VAL 697 DELETION SEQADV 8CGC A UNP P07333 ASP 698 DELETION SEQADV 8CGC A UNP P07333 TYR 699 DELETION SEQADV 8CGC A UNP P07333 LYS 700 DELETION SEQADV 8CGC A UNP P07333 ASN 701 DELETION SEQADV 8CGC A UNP P07333 ILE 702 DELETION SEQADV 8CGC A UNP P07333 HIS 703 DELETION SEQADV 8CGC A UNP P07333 LEU 704 DELETION SEQADV 8CGC A UNP P07333 GLU 705 DELETION SEQADV 8CGC A UNP P07333 LYS 706 DELETION SEQADV 8CGC A UNP P07333 LYS 707 DELETION SEQADV 8CGC A UNP P07333 TYR 708 DELETION SEQADV 8CGC A UNP P07333 VAL 709 DELETION SEQADV 8CGC A UNP P07333 ARG 710 DELETION SEQADV 8CGC A UNP P07333 ARG 711 DELETION SEQADV 8CGC A UNP P07333 ASP 712 DELETION SEQADV 8CGC A UNP P07333 SER 713 DELETION SEQADV 8CGC A UNP P07333 GLY 714 DELETION SEQADV 8CGC A UNP P07333 PHE 715 DELETION SEQADV 8CGC A UNP P07333 SER 716 DELETION SEQADV 8CGC A UNP P07333 SER 717 DELETION SEQADV 8CGC A UNP P07333 GLN 718 DELETION SEQADV 8CGC A UNP P07333 GLY 719 DELETION SEQADV 8CGC A UNP P07333 VAL 720 DELETION SEQADV 8CGC A UNP P07333 ASP 721 DELETION SEQADV 8CGC A UNP P07333 THR 722 DELETION SEQADV 8CGC A UNP P07333 TYR 723 DELETION SEQADV 8CGC A UNP P07333 VAL 724 DELETION SEQADV 8CGC A UNP P07333 GLU 725 DELETION SEQADV 8CGC A UNP P07333 MET 726 DELETION SEQADV 8CGC A UNP P07333 ARG 727 DELETION SEQADV 8CGC A UNP P07333 PRO 728 DELETION SEQADV 8CGC A UNP P07333 VAL 729 DELETION SEQADV 8CGC A UNP P07333 SER 730 DELETION SEQADV 8CGC A UNP P07333 THR 731 DELETION SEQADV 8CGC A UNP P07333 SER 732 DELETION SEQADV 8CGC A UNP P07333 SER 733 DELETION SEQADV 8CGC A UNP P07333 ASN 734 DELETION SEQADV 8CGC A UNP P07333 ASP 735 DELETION SEQADV 8CGC A UNP P07333 SER 736 DELETION SEQADV 8CGC A UNP P07333 PHE 737 DELETION SEQADV 8CGC A UNP P07333 SER 738 DELETION SEQADV 8CGC A UNP P07333 GLU 739 DELETION SEQADV 8CGC A UNP P07333 GLN 740 DELETION SEQADV 8CGC A UNP P07333 ASP 741 DELETION SEQRES 1 A 343 MET LYS LYS GLY HIS HIS HIS HIS HIS HIS GLY GLN LYS SEQRES 2 A 343 PRO LYS TYR GLN VAL ARG TRP LYS ILE ILE GLU SER TYR SEQRES 3 A 343 GLU GLY ASN SER TYR THR PHE ILE ASP PRO THR GLN LEU SEQRES 4 A 343 PRO TYR ASN GLU LYS TRP GLU PHE PRO ARG ASN ASN LEU SEQRES 5 A 343 GLN PHE GLY LYS THR LEU GLY ALA GLY ALA PHE GLY LYS SEQRES 6 A 343 VAL VAL GLU ALA THR ALA PHE GLY LEU GLY LYS GLU ASP SEQRES 7 A 343 ALA VAL LEU LYS VAL ALA VAL LYS MET LEU LYS SER THR SEQRES 8 A 343 ALA HIS ALA ASP GLU LYS GLU ALA LEU MET SER GLU LEU SEQRES 9 A 343 LYS ILE MET SER HIS LEU GLY GLN HIS GLU ASN ILE VAL SEQRES 10 A 343 ASN LEU LEU GLY ALA CYS THR HIS GLY GLY PRO VAL LEU SEQRES 11 A 343 VAL ILE THR GLU TYR CYS CYS TYR GLY ASP LEU LEU ASN SEQRES 12 A 343 PHE LEU ARG ARG LYS ALA GLU ALA MET LEU GLY PRO SER SEQRES 13 A 343 LEU SER PRO GLY GLN ASP PRO GLU GLY LEU ASP LYS GLU SEQRES 14 A 343 ASP GLY ARG PRO LEU GLU LEU ARG ASP LEU LEU HIS PHE SEQRES 15 A 343 SER SER GLN VAL ALA GLN GLY MET ALA PHE LEU ALA SER SEQRES 16 A 343 LYS ASN CYS ILE HIS ARG ASP VAL ALA ALA ARG ASN VAL SEQRES 17 A 343 LEU LEU THR ASN GLY HIS VAL ALA LYS ILE GLY ASP PHE SEQRES 18 A 343 GLY LEU ALA ARG ASP ILE MET ASN ASP SER ASN TYR ILE SEQRES 19 A 343 VAL LYS GLY ASN ALA ARG LEU PRO VAL LYS TRP MET ALA SEQRES 20 A 343 PRO GLU SER ILE PHE ASP CYS VAL TYR THR VAL GLN SER SEQRES 21 A 343 ASP VAL TRP SER TYR GLY ILE LEU LEU TRP GLU ILE PHE SEQRES 22 A 343 SER LEU GLY LEU ASN PRO TYR PRO GLY ILE LEU VAL ASN SEQRES 23 A 343 SER LYS PHE TYR LYS LEU VAL LYS ASP GLY TYR GLN MET SEQRES 24 A 343 ALA GLN PRO ALA PHE ALA PRO LYS ASN ILE TYR SER ILE SEQRES 25 A 343 MET GLN ALA CYS TRP ALA LEU GLU PRO THR HIS ARG PRO SEQRES 26 A 343 THR PHE GLN GLN ILE CYS SER PHE LEU GLN GLU GLN ALA SEQRES 27 A 343 GLN GLU ASP ARG ARG HET LMR A1001 9 HET GOL A1002 6 HET UIK A1003 27 HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETNAM GOL GLYCEROL HETNAM UIK [4-[4-[METHYL-[(3-METHYLPHENYL)METHYL]AMINO]-7~{H}- HETNAM 2 UIK PYRROLO[2,3-D]PYRIMIDIN-6-YL]PHENYL]METHANOL HETSYN LMR L-MALATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 LMR C4 H6 O5 FORMUL 3 GOL C3 H8 O3 FORMUL 4 UIK C22 H22 N4 O FORMUL 5 HOH *379(H2 O) HELIX 1 AA1 ASP A 565 LEU A 569 5 5 HELIX 2 AA2 ASN A 572 GLU A 576 5 5 HELIX 3 AA3 PRO A 578 ASN A 580 5 3 HELIX 4 AA4 HIS A 623 GLY A 641 1 19 HELIX 5 AA5 LEU A 671 MET A 682 1 12 HELIX 6 AA6 GLU A 751 LYS A 772 1 22 HELIX 7 AA7 ALA A 780 ARG A 782 5 3 HELIX 8 AA8 ASN A 788 HIS A 790 5 3 HELIX 9 AA9 PHE A 797 ARG A 801 5 5 HELIX 10 AB1 ASP A 802 ASP A 806 5 5 HELIX 11 AB2 PRO A 818 MET A 822 5 5 HELIX 12 AB3 ALA A 823 CYS A 830 1 8 HELIX 13 AB4 THR A 833 SER A 850 1 18 HELIX 14 AB5 ASN A 862 ASP A 871 1 10 HELIX 15 AB6 PRO A 882 TRP A 893 1 12 HELIX 16 AB7 GLU A 896 ARG A 900 5 5 HELIX 17 AB8 THR A 902 ARG A 919 1 18 SHEET 1 AA1 2 LYS A 551 ILE A 552 0 SHEET 2 AA1 2 CYS A 774 ILE A 775 -1 O ILE A 775 N LYS A 551 SHEET 1 AA2 5 LEU A 582 ALA A 590 0 SHEET 2 AA2 5 GLY A 594 LEU A 604 -1 O GLU A 598 N GLY A 585 SHEET 3 AA2 5 ALA A 609 LEU A 618 -1 O VAL A 613 N ALA A 599 SHEET 4 AA2 5 LEU A 660 GLU A 664 -1 O VAL A 661 N LYS A 616 SHEET 5 AA2 5 LEU A 649 CYS A 653 -1 N LEU A 650 O ILE A 662 SHEET 1 AA3 3 GLY A 669 ASP A 670 0 SHEET 2 AA3 3 VAL A 784 THR A 787 -1 O LEU A 786 N GLY A 669 SHEET 3 AA3 3 VAL A 791 ILE A 794 -1 O LYS A 793 N LEU A 785 SHEET 1 AA4 2 ILE A 810 VAL A 811 0 SHEET 2 AA4 2 ARG A 816 LEU A 817 -1 O LEU A 817 N ILE A 810 CRYST1 81.013 81.013 143.237 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012344 0.007127 0.000000 0.00000 SCALE2 0.000000 0.014253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006981 0.00000