HEADER BLOOD CLOTTING 07-FEB-23 8CHE TITLE TLT-1 BINDING FAB OF THE BISPECIFIC ANTIBODY HMB-001 IN COMPLEX WITH TITLE 2 THE TLT-1 STALK PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB HEAVY CHAIN; COMPND 3 CHAIN: H, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB LIGHT CHAIN; COMPND 7 CHAIN: L, B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TREM-LIKE TRANSCRIPT 1 PROTEIN; COMPND 11 CHAIN: C, D; COMPND 12 SYNONYM: TLT-1,TRIGGERING RECEPTOR EXPRESSED ON MYELOID CELLS-LIKE COMPND 13 PROTEIN 1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS TLT-1, FAB, BISPECIFIC ANTIBODY, HMB-001, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR E.JOHANSSON,G.SCHLUCKEBIER REVDAT 3 11-SEP-24 8CHE 1 JRNL REVDAT 2 10-JUL-24 8CHE 1 JRNL REVDAT 1 27-DEC-23 8CHE 0 JRNL AUTH P.S.GANDHI,M.ZIVKOVIC,H.OSTERGAARD,A.C.BONDE,T.ELM, JRNL AUTH 2 M.N.LOVGREEN,G.SCHLUCKEBIER,E.JOHANSSON,O.H.OLSEN, JRNL AUTH 3 E.H.N.OLSEN,I.A.DE BUS,K.BLOEM,O.ALSKAR,C.J.REA,S.E.BJORN, JRNL AUTH 4 R.E.SCHUTGENS,B.SORENSEN,R.T.URBANUS,J.H.FABER JRNL TITL A BISPECIFIC ANTIBODY APPROACH FOR THE POTENTIAL JRNL TITL 2 PROPHYLACTIC TREATMENT OF INHERITED BLEEDING DISORDERS. JRNL REF NAT CARDIOVASC RES V. 3 166 2024 JRNL REFN ESSN 2731-0590 JRNL PMID 39196196 JRNL DOI 10.1038/S44161-023-00418-4 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 134358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4600 - 3.5000 0.98 10971 143 0.1471 0.1412 REMARK 3 2 3.5000 - 2.7800 0.98 10938 150 0.1506 0.1656 REMARK 3 3 2.7800 - 2.4300 0.96 10758 142 0.1525 0.1867 REMARK 3 4 2.4300 - 2.2100 0.96 10819 138 0.1500 0.1912 REMARK 3 5 2.2100 - 2.0500 0.96 10715 146 0.1452 0.1575 REMARK 3 6 2.0500 - 1.9300 0.95 10713 132 0.1501 0.1761 REMARK 3 7 1.9300 - 1.8300 0.95 10626 151 0.1672 0.1823 REMARK 3 8 1.8300 - 1.7500 0.94 10544 137 0.1666 0.2277 REMARK 3 9 1.7500 - 1.6800 0.94 10492 157 0.1725 0.1768 REMARK 3 10 1.6800 - 1.6300 0.94 10521 139 0.1837 0.2339 REMARK 3 11 1.6300 - 1.5800 0.93 10412 139 0.2038 0.1958 REMARK 3 12 1.5800 - 1.5300 0.74 8293 120 0.2443 0.2856 REMARK 3 13 1.5300 - 1.4900 0.61 6773 89 0.3073 0.3144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.166 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.009 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7204 REMARK 3 ANGLE : 0.955 9850 REMARK 3 CHIRALITY : 0.081 1114 REMARK 3 PLANARITY : 0.008 1283 REMARK 3 DIHEDRAL : 6.151 1023 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -2.3523 -12.2897 -32.8804 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.1533 REMARK 3 T33: 0.1444 T12: -0.0045 REMARK 3 T13: -0.0007 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1522 L22: 0.2082 REMARK 3 L33: 0.1555 L12: -0.0409 REMARK 3 L13: -0.0124 L23: 0.0577 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0008 S13: 0.0142 REMARK 3 S21: -0.0038 S22: -0.0085 S23: -0.0282 REMARK 3 S31: -0.0181 S32: 0.0145 S33: -0.0155 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 140068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 28.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.05225 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59290 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M LITHIUM CHLORIDE, 20% (W/V) PEG REMARK 280 6000, 100 MM CITRIC ACID/NAOH, PH 4.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 215 REMARK 465 LYS A 215 REMARK 465 GLU C 1 REMARK 465 GLU C 2 REMARK 465 GLU C 3 REMARK 465 GLU C 4 REMARK 465 GLU C 5 REMARK 465 THR C 6 REMARK 465 GLY C 22 REMARK 465 SER C 23 REMARK 465 ALA C 24 REMARK 465 ASN C 25 REMARK 465 PRO C 26 REMARK 465 LEU C 27 REMARK 465 GLU C 28 REMARK 465 PRO C 29 REMARK 465 SER C 30 REMARK 465 GLN C 31 REMARK 465 ASP C 32 REMARK 465 GLU C 33 REMARK 465 LYS C 34 REMARK 465 SER C 35 REMARK 465 ILE C 36 REMARK 465 PRO C 37 REMARK 465 GLU D 1 REMARK 465 GLU D 2 REMARK 465 GLU D 3 REMARK 465 GLU D 4 REMARK 465 GLU D 5 REMARK 465 THR D 6 REMARK 465 GLY D 22 REMARK 465 SER D 23 REMARK 465 ALA D 24 REMARK 465 ASN D 25 REMARK 465 PRO D 26 REMARK 465 LEU D 27 REMARK 465 GLU D 28 REMARK 465 PRO D 29 REMARK 465 SER D 30 REMARK 465 GLN D 31 REMARK 465 ASP D 32 REMARK 465 GLU D 33 REMARK 465 LYS D 34 REMARK 465 SER D 35 REMARK 465 ILE D 36 REMARK 465 PRO D 37 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS H 141 SG CYS H 197 1.20 REMARK 500 HG CYS A 141 SG CYS A 197 1.21 REMARK 500 HZ2 LYS B 131 O HOH B 301 1.50 REMARK 500 H3 GLU H 1 O HOH H 302 1.54 REMARK 500 O HOH A 547 O HOH A 568 1.81 REMARK 500 O HOH H 452 O HOH A 361 1.85 REMARK 500 O HOH L 337 O HOH L 391 1.85 REMARK 500 SG CYS A 128 O HOH B 460 1.89 REMARK 500 O HOH A 482 O HOH B 367 1.89 REMARK 500 O HOH H 470 O HOH H 504 1.92 REMARK 500 O HOH B 432 O HOH B 511 1.93 REMARK 500 O HOH H 330 O HOH H 536 1.94 REMARK 500 O HOH L 338 O HOH L 506 1.97 REMARK 500 O HOH H 454 O HOH L 362 1.98 REMARK 500 O HOH B 417 O HOH B 461 2.01 REMARK 500 NH2 ARG A 87 O HOH A 301 2.01 REMARK 500 O HOH A 311 O HOH A 387 2.03 REMARK 500 OG SER A 131 O HOH A 302 2.04 REMARK 500 O HOH L 497 O HOH C 102 2.05 REMARK 500 O HOH B 497 O HOH B 507 2.06 REMARK 500 O HOH H 440 O HOH L 447 2.06 REMARK 500 O HOH L 320 O HOH L 382 2.07 REMARK 500 O HOH B 477 O HOH B 486 2.07 REMARK 500 O SER L 81 O HOH L 301 2.10 REMARK 500 SG CYS B 162 O HOH B 493 2.10 REMARK 500 O HOH B 473 O HOH B 509 2.11 REMARK 500 O HOH H 468 O HOH H 513 2.12 REMARK 500 O HOH H 507 O HOH H 518 2.12 REMARK 500 O HOH H 330 O HOH H 503 2.13 REMARK 500 O HOH L 503 O HOH L 505 2.14 REMARK 500 O HOH B 406 O HOH B 486 2.14 REMARK 500 O ARG L 32 O HOH L 302 2.14 REMARK 500 OE1 GLU D 14 O HOH D 101 2.15 REMARK 500 O HOH H 353 O HOH H 541 2.15 REMARK 500 O HOH A 495 O HOH A 505 2.15 REMARK 500 O HOH H 510 O HOH H 516 2.15 REMARK 500 O HOH H 310 O HOH H 313 2.16 REMARK 500 O HOH B 498 O HOH B 500 2.16 REMARK 500 O SER L 81 O HOH L 301 2.16 REMARK 500 O HOH B 466 O HOH B 499 2.17 REMARK 500 NZ LYS A 118 O HOH A 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 513 O HOH B 438 1455 1.82 REMARK 500 O HOH H 478 O HOH L 425 1455 1.97 REMARK 500 O HOH A 538 O HOH B 485 1554 2.06 REMARK 500 O HOH H 303 O HOH A 504 1565 2.09 REMARK 500 O HOH H 327 O HOH L 367 1455 2.15 REMARK 500 O HOH B 472 O HOH B 500 1455 2.16 REMARK 500 O HOH H 503 O HOH L 378 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 145 62.42 72.75 REMARK 500 ARG L 32 -99.93 43.41 REMARK 500 VAL L 56 -51.19 78.81 REMARK 500 LYS L 131 4.30 -67.69 REMARK 500 VAL A 100 74.81 -100.24 REMARK 500 ASP A 145 57.94 71.80 REMARK 500 ARG B 32 -112.09 52.59 REMARK 500 VAL B 56 -50.92 77.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 8CHE H 1 215 PDB 8CHE 8CHE 1 215 DBREF 8CHE L 1 219 PDB 8CHE 8CHE 1 219 DBREF 8CHE A 1 215 PDB 8CHE 8CHE 1 215 DBREF 8CHE B 1 219 PDB 8CHE 8CHE 1 219 DBREF 8CHE C 1 37 UNP Q86YW5 TRML1_HUMAN 126 162 DBREF 8CHE D 1 37 UNP Q86YW5 TRML1_HUMAN 126 162 SEQRES 1 H 215 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 215 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 215 PHE THR PHE SER ARG TYR TRP MET THR TRP VAL ARG GLN SEQRES 4 H 215 ALA PRO GLY LYS GLY LEU VAL TRP VAL GLY GLU ILE ASN SEQRES 5 H 215 PRO ASP SER SER THR ILE ASN TYR ALA PRO SER VAL LYS SEQRES 6 H 215 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 H 215 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 215 ALA VAL TYR TYR CYS ALA SER GLY VAL PHE THR SER TRP SEQRES 9 H 215 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 10 H 215 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO CYS SER ARG SEQRES 11 H 215 SER THR SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL SEQRES 12 H 215 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 13 H 215 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 H 215 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 15 H 215 VAL THR VAL PRO SER SER SER LEU GLY THR LYS THR TYR SEQRES 16 H 215 THR CYS ASN VAL ASP HIS LYS PRO SER ASN THR LYS VAL SEQRES 17 H 215 ASP LYS ARG VAL GLU SER LYS SEQRES 1 L 219 ASP ILE VAL MET THR GLN THR PRO LEU SER SER PRO VAL SEQRES 2 L 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL HIS ARG GLN GLY ASN THR TYR PHE HIS SEQRES 4 L 219 TRP LEU GLN GLN ARG PRO GLY GLN PRO PRO ARG LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY ALA GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 219 TYR CYS SER GLN SER THR HIS VAL PRO TYR THR PHE GLY SEQRES 9 L 219 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER CYS ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 215 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 215 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 215 PHE THR PHE SER ARG TYR TRP MET THR TRP VAL ARG GLN SEQRES 4 A 215 ALA PRO GLY LYS GLY LEU VAL TRP VAL GLY GLU ILE ASN SEQRES 5 A 215 PRO ASP SER SER THR ILE ASN TYR ALA PRO SER VAL LYS SEQRES 6 A 215 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 A 215 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 215 ALA VAL TYR TYR CYS ALA SER GLY VAL PHE THR SER TRP SEQRES 9 A 215 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 10 A 215 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO CYS SER ARG SEQRES 11 A 215 SER THR SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL SEQRES 12 A 215 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 13 A 215 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 A 215 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 15 A 215 VAL THR VAL PRO SER SER SER LEU GLY THR LYS THR TYR SEQRES 16 A 215 THR CYS ASN VAL ASP HIS LYS PRO SER ASN THR LYS VAL SEQRES 17 A 215 ASP LYS ARG VAL GLU SER LYS SEQRES 1 B 219 ASP ILE VAL MET THR GLN THR PRO LEU SER SER PRO VAL SEQRES 2 B 219 THR LEU GLY GLN PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 B 219 GLN SER LEU VAL HIS ARG GLN GLY ASN THR TYR PHE HIS SEQRES 4 B 219 TRP LEU GLN GLN ARG PRO GLY GLN PRO PRO ARG LEU LEU SEQRES 5 B 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 B 219 ARG PHE SER GLY SER GLY ALA GLY THR ASP PHE THR LEU SEQRES 7 B 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 B 219 TYR CYS SER GLN SER THR HIS VAL PRO TYR THR PHE GLY SEQRES 9 B 219 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 B 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 B 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 B 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 B 219 ASN ALA LEU GLN SER CYS ASN SER GLN GLU SER VAL THR SEQRES 14 B 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 B 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 B 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 B 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 37 GLU GLU GLU GLU GLU THR HIS LYS ILE GLY SER LEU ALA SEQRES 2 C 37 GLU ASN ALA PHE SER ASP PRO ALA GLY SER ALA ASN PRO SEQRES 3 C 37 LEU GLU PRO SER GLN ASP GLU LYS SER ILE PRO SEQRES 1 D 37 GLU GLU GLU GLU GLU THR HIS LYS ILE GLY SER LEU ALA SEQRES 2 D 37 GLU ASN ALA PHE SER ASP PRO ALA GLY SER ALA ASN PRO SEQRES 3 D 37 LEU GLU PRO SER GLN ASP GLU LYS SER ILE PRO FORMUL 7 HOH *1017(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASN H 74 LYS H 76 5 3 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 157 ALA H 159 5 3 HELIX 5 AA5 SER H 188 LYS H 193 5 6 HELIX 6 AA6 LYS H 202 ASN H 205 5 4 HELIX 7 AA7 GLU L 84 VAL L 88 5 5 HELIX 8 AA8 SER L 126 LYS L 131 1 6 HELIX 9 AA9 LYS L 188 LYS L 193 1 6 HELIX 10 AB1 THR A 28 TYR A 32 5 5 HELIX 11 AB2 ASN A 74 LYS A 76 5 3 HELIX 12 AB3 ARG A 87 THR A 91 5 5 HELIX 13 AB4 SER A 157 ALA A 159 5 3 HELIX 14 AB5 SER A 188 LYS A 193 5 6 HELIX 15 AB6 LYS A 202 ASN A 205 5 4 HELIX 16 AB7 GLU B 84 VAL B 88 5 5 HELIX 17 AB8 SER B 126 LYS B 131 1 6 HELIX 18 AB9 LYS B 188 LYS B 193 1 6 HELIX 19 AC1 ILE C 9 ALA C 13 5 5 HELIX 20 AC2 ILE D 9 ALA D 13 5 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 108 VAL H 112 1 O THR H 111 N VAL H 12 SHEET 3 AA2 6 ALA H 92 SER H 98 -1 N TYR H 94 O THR H 108 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O VAL H 46 N ARG H 38 SHEET 6 AA2 6 ILE H 58 TYR H 60 -1 O ASN H 59 N GLU H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 108 VAL H 112 1 O THR H 111 N VAL H 12 SHEET 3 AA3 4 ALA H 92 SER H 98 -1 N TYR H 94 O THR H 108 SHEET 4 AA3 4 SER H 103 TRP H 104 -1 O SER H 103 N SER H 98 SHEET 1 AA4 4 SER H 121 LEU H 125 0 SHEET 2 AA4 4 THR H 136 TYR H 146 -1 O LEU H 142 N PHE H 123 SHEET 3 AA4 4 TYR H 177 PRO H 186 -1 O LEU H 179 N VAL H 143 SHEET 4 AA4 4 VAL H 164 THR H 166 -1 N HIS H 165 O VAL H 182 SHEET 1 AA5 4 SER H 121 LEU H 125 0 SHEET 2 AA5 4 THR H 136 TYR H 146 -1 O LEU H 142 N PHE H 123 SHEET 3 AA5 4 TYR H 177 PRO H 186 -1 O LEU H 179 N VAL H 143 SHEET 4 AA5 4 VAL H 170 LEU H 171 -1 N VAL H 170 O SER H 178 SHEET 1 AA6 3 THR H 152 TRP H 155 0 SHEET 2 AA6 3 THR H 196 HIS H 201 -1 O ASN H 198 N SER H 154 SHEET 3 AA6 3 THR H 206 ARG H 211 -1 O VAL H 208 N VAL H 199 SHEET 1 AA7 4 MET L 4 THR L 5 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 75 ILE L 80 -1 O ILE L 80 N ALA L 19 SHEET 4 AA7 4 PHE L 67 ALA L 72 -1 N SER L 68 O LYS L 79 SHEET 1 AA8 2 VAL L 13 THR L 14 0 SHEET 2 AA8 2 ILE L 111 LYS L 112 1 O LYS L 112 N VAL L 13 SHEET 1 AA9 5 ASN L 58 ARG L 59 0 SHEET 2 AA9 5 ARG L 50 TYR L 54 -1 N TYR L 54 O ASN L 58 SHEET 3 AA9 5 PHE L 38 GLN L 43 -1 N TRP L 40 O ILE L 53 SHEET 4 AA9 5 GLY L 89 GLN L 95 -1 O TYR L 92 N LEU L 41 SHEET 5 AA9 5 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AB1 5 ASN L 58 ARG L 59 0 SHEET 2 AB1 5 ARG L 50 TYR L 54 -1 N TYR L 54 O ASN L 58 SHEET 3 AB1 5 PHE L 38 GLN L 43 -1 N TRP L 40 O ILE L 53 SHEET 4 AB1 5 GLY L 89 GLN L 95 -1 O TYR L 92 N LEU L 41 SHEET 5 AB1 5 THR L 107 LEU L 109 -1 O THR L 107 N TYR L 91 SHEET 1 AB2 4 SER L 119 PHE L 123 0 SHEET 2 AB2 4 THR L 134 PHE L 144 -1 O LEU L 140 N PHE L 121 SHEET 3 AB2 4 TYR L 178 SER L 187 -1 O LEU L 180 N LEU L 141 SHEET 4 AB2 4 SER L 164 VAL L 168 -1 N SER L 167 O SER L 181 SHEET 1 AB3 4 ALA L 158 LEU L 159 0 SHEET 2 AB3 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 AB3 4 VAL L 196 THR L 202 -1 O GLU L 200 N GLN L 152 SHEET 4 AB3 4 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SHEET 1 AB4 4 GLN A 3 SER A 7 0 SHEET 2 AB4 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AB4 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AB4 4 PHE A 68 ASP A 73 -1 N SER A 71 O TYR A 80 SHEET 1 AB5 6 GLY A 10 VAL A 12 0 SHEET 2 AB5 6 THR A 108 VAL A 112 1 O THR A 111 N VAL A 12 SHEET 3 AB5 6 ALA A 92 SER A 98 -1 N TYR A 94 O THR A 108 SHEET 4 AB5 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AB5 6 LEU A 45 ILE A 51 -1 O VAL A 46 N ARG A 38 SHEET 6 AB5 6 ILE A 58 TYR A 60 -1 O ASN A 59 N GLU A 50 SHEET 1 AB6 4 GLY A 10 VAL A 12 0 SHEET 2 AB6 4 THR A 108 VAL A 112 1 O THR A 111 N VAL A 12 SHEET 3 AB6 4 ALA A 92 SER A 98 -1 N TYR A 94 O THR A 108 SHEET 4 AB6 4 SER A 103 TRP A 104 -1 O SER A 103 N SER A 98 SHEET 1 AB7 4 SER A 121 LEU A 125 0 SHEET 2 AB7 4 THR A 136 TYR A 146 -1 O LEU A 142 N PHE A 123 SHEET 3 AB7 4 TYR A 177 PRO A 186 -1 O LEU A 179 N VAL A 143 SHEET 4 AB7 4 VAL A 164 THR A 166 -1 N HIS A 165 O VAL A 182 SHEET 1 AB8 4 SER A 121 LEU A 125 0 SHEET 2 AB8 4 THR A 136 TYR A 146 -1 O LEU A 142 N PHE A 123 SHEET 3 AB8 4 TYR A 177 PRO A 186 -1 O LEU A 179 N VAL A 143 SHEET 4 AB8 4 VAL A 170 LEU A 171 -1 N VAL A 170 O SER A 178 SHEET 1 AB9 3 THR A 152 TRP A 155 0 SHEET 2 AB9 3 THR A 196 HIS A 201 -1 O ASN A 198 N SER A 154 SHEET 3 AB9 3 THR A 206 ARG A 211 -1 O VAL A 208 N VAL A 199 SHEET 1 AC1 4 MET B 4 THR B 5 0 SHEET 2 AC1 4 ALA B 19 SER B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AC1 4 ASP B 75 ILE B 80 -1 O ILE B 80 N ALA B 19 SHEET 4 AC1 4 PHE B 67 ALA B 72 -1 N SER B 68 O LYS B 79 SHEET 1 AC2 2 VAL B 13 THR B 14 0 SHEET 2 AC2 2 ILE B 111 LYS B 112 1 O LYS B 112 N VAL B 13 SHEET 1 AC3 5 ASN B 58 ARG B 59 0 SHEET 2 AC3 5 ARG B 50 TYR B 54 -1 N TYR B 54 O ASN B 58 SHEET 3 AC3 5 PHE B 38 GLN B 43 -1 N TRP B 40 O ILE B 53 SHEET 4 AC3 5 GLY B 89 GLN B 95 -1 O VAL B 90 N GLN B 43 SHEET 5 AC3 5 THR B 102 PHE B 103 -1 O THR B 102 N GLN B 95 SHEET 1 AC4 5 ASN B 58 ARG B 59 0 SHEET 2 AC4 5 ARG B 50 TYR B 54 -1 N TYR B 54 O ASN B 58 SHEET 3 AC4 5 PHE B 38 GLN B 43 -1 N TRP B 40 O ILE B 53 SHEET 4 AC4 5 GLY B 89 GLN B 95 -1 O VAL B 90 N GLN B 43 SHEET 5 AC4 5 THR B 107 LEU B 109 -1 O LEU B 109 N GLY B 89 SHEET 1 AC5 4 SER B 119 PHE B 123 0 SHEET 2 AC5 4 THR B 134 PHE B 144 -1 O LEU B 140 N PHE B 121 SHEET 3 AC5 4 TYR B 178 SER B 187 -1 O LEU B 186 N ALA B 135 SHEET 4 AC5 4 SER B 164 VAL B 168 -1 N SER B 167 O SER B 181 SHEET 1 AC6 4 ALA B 158 LEU B 159 0 SHEET 2 AC6 4 LYS B 150 VAL B 155 -1 N VAL B 155 O ALA B 158 SHEET 3 AC6 4 VAL B 196 THR B 202 -1 O GLU B 200 N GLN B 152 SHEET 4 AC6 4 VAL B 210 ASN B 215 -1 O VAL B 210 N VAL B 201 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.15 SSBOND 2 CYS H 128 CYS L 219 1555 1555 2.03 SSBOND 3 CYS H 141 CYS H 197 1555 1555 2.03 SSBOND 4 CYS L 23 CYS L 93 1555 1555 2.14 SSBOND 5 CYS L 139 CYS L 199 1555 1555 2.08 SSBOND 6 CYS A 22 CYS A 96 1555 1555 2.13 SSBOND 7 CYS A 128 CYS B 219 1555 1555 2.05 SSBOND 8 CYS A 141 CYS A 197 1555 1555 2.02 SSBOND 9 CYS B 23 CYS B 93 1555 1555 2.17 SSBOND 10 CYS B 139 CYS B 199 1555 1555 2.10 CISPEP 1 PHE H 147 PRO H 148 0 -5.86 CISPEP 2 GLU H 149 PRO H 150 0 0.74 CISPEP 3 VAL L 99 PRO L 100 0 -4.34 CISPEP 4 TYR L 145 PRO L 146 0 1.32 CISPEP 5 PHE A 147 PRO A 148 0 -9.01 CISPEP 6 GLU A 149 PRO A 150 0 2.65 CISPEP 7 VAL B 99 PRO B 100 0 -0.54 CISPEP 8 TYR B 145 PRO B 146 0 2.70 CRYST1 53.234 65.377 67.145 91.88 91.72 92.89 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018785 0.000948 0.000597 0.00000 SCALE2 0.000000 0.015315 0.000527 0.00000 SCALE3 0.000000 0.000000 0.014909 0.00000