HEADER VIRAL PROTEIN 13-FEB-23 8CJW TITLE NUCLEOPROTEIN THOGOTOVIRUS DELTA188-196 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: INTERNAL DELETION OF RESIDUES 188-196 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THOGOTOVIRUS THOGOTOENSE; SOURCE 3 ORGANISM_TAXID: 11569; SOURCE 4 GENE: SEGMENT 5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS VIRAL REPLICATION, NUCLEOPROTEIN, RNA BINDING, ORTHOMYXOVIRUS, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.DICK,Y.ROSKE REVDAT 1 19-JUN-24 8CJW 0 JRNL AUTH A.DICK,V.MIKIRTUMOV,J.FUCHS,F.KRUPP,D.OLAL,E.BENDL,T.SPRINK, JRNL AUTH 2 C.DIEBOLDER,M.KUDRYASHEV,G.KOCHS,Y.ROSKE,O.DAUMKE JRNL TITL STRUCTURAL CHARACTERIZATION OF THOGOTO VIRUS NUCLEOPROTEIN JRNL TITL 2 PROVIDES INSIGHTS INTO VIRAL RNA ENCAPSIDATION AND RNP JRNL TITL 3 ASSEMBLY. JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38749445 JRNL DOI 10.1016/J.STR.2024.04.016 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8740 - 4.4655 0.99 2771 147 0.1433 0.1876 REMARK 3 2 4.4655 - 3.5450 1.00 2769 145 0.1479 0.1831 REMARK 3 3 3.5450 - 3.0970 0.99 2801 148 0.1789 0.2369 REMARK 3 4 3.0970 - 2.8139 0.99 2767 145 0.2158 0.2865 REMARK 3 5 2.8139 - 2.6123 1.00 2774 146 0.2162 0.2902 REMARK 3 6 2.6123 - 2.4583 0.99 2787 147 0.2517 0.3161 REMARK 3 7 2.4583 - 2.3352 1.00 2757 145 0.2648 0.3175 REMARK 3 8 2.3352 - 2.2335 0.99 2766 146 0.2887 0.3544 REMARK 3 9 2.2335 - 2.1475 1.00 2790 148 0.3548 0.4004 REMARK 3 10 2.1475 - 2.0734 0.99 2812 148 0.4449 0.4898 REMARK 3 11 2.0734 - 2.0100 0.98 2733 143 0.5403 0.5664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3531 REMARK 3 ANGLE : 0.896 4767 REMARK 3 CHIRALITY : 0.057 505 REMARK 3 PLANARITY : 0.007 610 REMARK 3 DIHEDRAL : 4.300 2950 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4410 -17.4271 0.8105 REMARK 3 T TENSOR REMARK 3 T11: 0.4164 T22: 0.4501 REMARK 3 T33: 0.4917 T12: 0.0577 REMARK 3 T13: -0.1479 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 4.4066 L22: 2.4096 REMARK 3 L33: 1.8944 L12: -0.1589 REMARK 3 L13: -0.4331 L23: -0.3217 REMARK 3 S TENSOR REMARK 3 S11: 0.2707 S12: 0.1920 S13: -0.4461 REMARK 3 S21: -0.0440 S22: -0.2072 S23: -0.2358 REMARK 3 S31: 0.0356 S32: 0.4763 S33: -0.0598 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.3547 -23.5139 -8.6724 REMARK 3 T TENSOR REMARK 3 T11: 0.6588 T22: 0.5804 REMARK 3 T33: 0.6508 T12: 0.1613 REMARK 3 T13: -0.2185 T23: -0.2122 REMARK 3 L TENSOR REMARK 3 L11: 3.9377 L22: 1.1097 REMARK 3 L33: 0.9594 L12: 1.2550 REMARK 3 L13: -0.2235 L23: -0.3025 REMARK 3 S TENSOR REMARK 3 S11: 0.2192 S12: 0.6911 S13: -0.9285 REMARK 3 S21: -0.2485 S22: -0.0722 S23: 0.0214 REMARK 3 S31: 0.3533 S32: 0.1871 S33: -0.1059 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.2108 -22.7315 0.0845 REMARK 3 T TENSOR REMARK 3 T11: 0.6089 T22: 0.4527 REMARK 3 T33: 0.9701 T12: 0.0569 REMARK 3 T13: -0.0178 T23: -0.0792 REMARK 3 L TENSOR REMARK 3 L11: 3.0475 L22: -0.6693 REMARK 3 L33: 0.1115 L12: 1.0188 REMARK 3 L13: 0.9905 L23: 0.6251 REMARK 3 S TENSOR REMARK 3 S11: 0.1359 S12: 0.0662 S13: -0.3427 REMARK 3 S21: 0.1302 S22: -0.0394 S23: 0.0128 REMARK 3 S31: 0.1675 S32: -0.1387 S33: -0.0548 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8CJW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1292128643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9814, 0.97973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 44.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 1500, 0.1M SPG PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 59.55500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.38410 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.54600 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 59.55500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.38410 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.54600 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 59.55500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.38410 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.54600 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.76819 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.09200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 68.76819 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.09200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 68.76819 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.09200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -119.11000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -59.55500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -103.15229 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 185 REMARK 465 PRO A 186 REMARK 465 LYS A 187 REMARK 465 ASN A 188 REMARK 465 PRO A 189 REMARK 465 LYS A 190 REMARK 465 THR A 191 REMARK 465 LYS A 192 REMARK 465 LYS A 193 REMARK 465 PRO A 194 REMARK 465 LEU A 195 REMARK 465 GLU A 196 REMARK 465 SER A 402 REMARK 465 GLY A 403 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 99 CG CD OE1 NE2 REMARK 470 THR A 397 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 433 O HOH A 601 2.13 REMARK 500 O ASP A 68 O HOH A 602 2.14 REMARK 500 O GLU A 439 O HOH A 603 2.15 REMARK 500 OH TYR A 338 O HOH A 604 2.16 REMARK 500 NZ LYS A 74 O HOH A 605 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 64 -92.68 -117.40 REMARK 500 TRP A 133 72.72 -112.97 REMARK 500 ARG A 165 54.48 -141.22 REMARK 500 ALA A 244 -62.75 -92.25 REMARK 500 SER A 272 19.86 -157.88 REMARK 500 THR A 429 -108.56 -124.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 808 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 7.02 ANGSTROMS DBREF 8CJW A 20 454 UNP P89216 NCAP_THOGV 20 454 SEQADV 8CJW THR A 397 UNP P89216 ALA 397 CONFLICT SEQRES 1 A 435 THR GLU SER GLN ILE PRO LYS MET TYR GLU MET ILE ARG SEQRES 2 A 435 ASP GLN MET ARG THR LEU ALA SER THR HIS LYS ILE PRO SEQRES 3 A 435 LEU ASN ILE ASP HIS ASN CYS GLU VAL ILE GLY SER ILE SEQRES 4 A 435 ILE MET ALA ALA CYS THR ASN ASN ARG ASP LEU ARG PRO SEQRES 5 A 435 VAL ASP LYS TYR TRP PHE LEU MET GLY PRO ALA GLY ALA SEQRES 6 A 435 GLU VAL MET THR GLU VAL GLU ILE ASP ILE GLN PRO GLN SEQRES 7 A 435 LEU GLN TRP ALA LYS GLY ALA VAL HIS ASP PRO LYS TYR SEQRES 8 A 435 LYS GLY GLN TRP TYR PRO PHE LEU ALA LEU LEU GLN ILE SEQRES 9 A 435 SER ASN LYS THR LYS ASP THR ILE LEU TRP GLN LYS TYR SEQRES 10 A 435 PRO VAL THR GLN GLU LEU GLU ILE SER ASN SER LEU GLU SEQRES 11 A 435 ILE TYR ALA ASN GLY HIS GLY ILE LYS ASP ARG LEU LYS SEQRES 12 A 435 ASN SER ARG PRO ARG SER VAL GLY PRO LEU VAL HIS LEU SEQRES 13 A 435 LEU HIS LEU LYS ARG LEU GLN GLU ASN PRO PRO LYS ASN SEQRES 14 A 435 PRO LYS THR LYS LYS PRO LEU GLU SER PRO ALA VAL ASN SEQRES 15 A 435 GLY ILE ARG LYS SER ILE VAL GLY HIS LEU LYS ARG GLN SEQRES 16 A 435 CYS ILE GLY GLU THR GLN LYS ALA MET ILE ASN GLN PHE SEQRES 17 A 435 GLU MET GLY ARG TRP GLU SER LEU SER THR PHE ALA ALA SEQRES 18 A 435 SER LEU LEU ALA ILE LYS PRO ARG ILE GLU ASN HIS PHE SEQRES 19 A 435 VAL LEU THR TYR PRO LEU ILE ALA ASN CYS GLU ASP PHE SEQRES 20 A 435 ALA GLY ALA THR LEU SER ASP GLU TRP VAL PHE LYS ALA SEQRES 21 A 435 MET GLU LYS ILE SER ASN LYS LYS THR LEU ARG VAL CYS SEQRES 22 A 435 GLY PRO ASP GLU LYS TRP ILE SER PHE MET ASN GLN ILE SEQRES 23 A 435 TYR ILE HIS SER VAL PHE GLN THR THR GLY GLU ASP LEU SEQRES 24 A 435 GLY VAL LEU GLU TRP VAL PHE GLY GLY ARG PHE CYS GLN SEQRES 25 A 435 ARG LYS GLU PHE GLY ARG TYR CYS LYS LYS SER GLN THR SEQRES 26 A 435 LYS VAL ILE GLY LEU PHE THR PHE GLN TYR GLU TYR TRP SEQRES 27 A 435 SER LYS PRO LEU LYS SER ALA PRO ARG SER ILE GLU GLY SEQRES 28 A 435 SER LYS ARG GLY GLN ILE SER CYS ARG PRO SER PHE LYS SEQRES 29 A 435 GLY LYS ARG PRO SER TYR ASN ASN PHE THR SER ILE ASP SEQRES 30 A 435 THR LEU GLN SER ALA SER GLY SER GLN THR VAL SER PHE SEQRES 31 A 435 TYR ASP GLN VAL ARG GLU GLU CYS GLN LYS TYR MET ASP SEQRES 32 A 435 LEU LYS VAL GLU GLY THR THR CYS PHE TYR ARG LYS GLY SEQRES 33 A 435 GLY HIS VAL GLU VAL GLU PHE PRO GLY SER ALA HIS CYS SEQRES 34 A 435 ASN THR TYR LEU PHE GLY HET SIN A 501 8 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET PO4 A 505 5 HET PO4 A 506 5 HETNAM SIN SUCCINIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SIN C4 H6 O4 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 PO4 2(O4 P 3-) FORMUL 8 HOH *209(H2 O) HELIX 1 AA1 GLN A 23 HIS A 42 1 20 HELIX 2 AA2 ILE A 48 THR A 64 1 17 HELIX 3 AA3 ILE A 94 VAL A 105 1 12 HELIX 4 AA4 ASP A 107 LYS A 111 5 5 HELIX 5 AA5 GLN A 113 TRP A 133 1 21 HELIX 6 AA6 TYR A 136 GLU A 143 1 8 HELIX 7 AA7 SER A 145 ALA A 152 5 8 HELIX 8 AA8 LYS A 158 ASN A 163 1 6 HELIX 9 AA9 SER A 164 VAL A 169 5 6 HELIX 10 AB1 GLY A 170 GLN A 182 1 13 HELIX 11 AB2 GLU A 183 ASN A 184 5 2 HELIX 12 AB3 SER A 197 PRO A 198 5 2 HELIX 13 AB4 ALA A 199 CYS A 215 1 17 HELIX 14 AB5 GLY A 217 MET A 229 1 13 HELIX 15 AB6 SER A 234 LEU A 242 1 9 HELIX 16 AB7 THR A 256 ASN A 262 1 7 HELIX 17 AB8 ASP A 273 LYS A 287 1 15 HELIX 18 AB9 ASP A 295 LYS A 297 5 3 HELIX 19 AC1 TRP A 298 GLN A 312 1 15 HELIX 20 AC2 THR A 313 GLU A 316 5 4 HELIX 21 AC3 ASP A 317 GLY A 326 1 10 HELIX 22 AC4 GLN A 331 PHE A 335 5 5 HELIX 23 AC5 LYS A 340 THR A 344 5 5 HELIX 24 AC6 SER A 408 LEU A 423 1 16 SHEET 1 AA1 2 VAL A 72 MET A 79 0 SHEET 2 AA1 2 VAL A 86 ASP A 93 -1 O VAL A 86 N MET A 79 SHEET 1 AA2 2 ARG A 290 GLY A 293 0 SHEET 2 AA2 2 LYS A 345 LEU A 349 -1 O LYS A 345 N GLY A 293 SHEET 1 AA3 3 TYR A 356 TRP A 357 0 SHEET 2 AA3 3 PHE A 431 ARG A 433 -1 O TYR A 432 N TRP A 357 SHEET 3 AA3 3 GLU A 439 VAL A 440 -1 O VAL A 440 N PHE A 431 CRYST1 119.110 119.110 91.638 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008396 0.004847 0.000000 0.00000 SCALE2 0.000000 0.009694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010913 0.00000